Wall clock time and date at job start Tue Mar 31 2020 08:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35973 * 117.00044 * 2 1 4 4 C 1.39192 * 119.92396 * 0.02562 * 3 2 1 5 5 C 1.37778 * 120.64027 * 179.97438 * 4 3 2 6 6 C 1.38921 * 120.03495 * 0.28095 * 5 4 3 7 7 O 1.34923 * 133.34193 * 179.73843 * 6 5 4 8 8 C 1.34426 * 110.88838 * 179.97438 * 7 6 5 9 9 C 1.50700 * 124.92324 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47656 * 194.97766 * 9 8 7 11 11 C 1.53004 * 109.47218 * 74.97579 * 9 8 7 12 12 N 1.46907 * 109.47012 * 314.97673 * 9 8 7 13 13 C 1.46905 * 110.99965 * 204.99757 * 12 9 8 14 14 C 1.53000 * 109.46995 * 179.97438 * 13 12 9 15 15 C 1.50697 * 109.46971 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00254 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00176 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99886 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00279 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47067 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47006 * 119.99769 * 19 17 15 22 22 H 1.48501 * 109.46942 * 240.00124 * 19 17 15 23 23 C 1.34003 * 110.15190 * 359.48368 * 8 7 6 24 24 C 1.50702 * 126.89995 * 179.97438 * 23 8 7 25 25 C 1.40457 * 119.40954 * 359.49226 * 6 5 4 26 26 C 1.38168 * 119.92178 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47503 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47436 * 299.99741 * 1 2 3 29 29 H 1.09005 * 109.46854 * 59.99790 * 1 2 3 30 30 H 1.07999 * 119.67685 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.97971 * 179.97438 * 5 4 3 32 32 H 1.09003 * 109.47190 * 299.99919 * 11 9 8 33 33 H 1.08996 * 109.46772 * 60.00040 * 11 9 8 34 34 H 1.08996 * 109.46977 * 180.02562 * 11 9 8 35 35 H 1.00895 * 111.00047 * 328.95225 * 12 9 8 36 36 H 1.08999 * 109.47092 * 300.00147 * 13 12 9 37 37 H 1.09001 * 109.46457 * 59.99924 * 13 12 9 38 38 H 1.09005 * 109.47102 * 300.00368 * 14 13 12 39 39 H 1.09005 * 109.46921 * 60.00271 * 14 13 12 40 40 H 0.96993 * 120.00247 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.46735 * 270.77242 * 24 23 8 42 42 H 1.09000 * 109.47514 * 30.77131 * 24 23 8 43 43 H 1.08998 * 109.47192 * 150.77787 * 24 23 8 44 44 H 1.08002 * 120.22570 * 0.04742 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2867 2.3779 0.0005 5 6 1.8968 3.6132 0.0011 6 6 3.2830 3.7041 -0.0048 7 8 4.1428 4.7438 -0.0104 8 6 5.4161 4.3128 -0.0142 9 6 6.6295 5.2065 -0.0202 10 1 7.5099 4.6223 -0.2880 11 6 6.8234 5.8126 1.3712 12 7 6.4396 6.2834 -1.0013 13 6 7.7315 6.7983 -1.4746 14 6 7.4933 7.9151 -2.4928 15 6 8.8185 8.4428 -2.9788 16 1 9.7387 8.0238 -2.5991 17 6 8.8564 9.4613 -3.9074 18 7 7.7359 9.9719 -4.3695 19 14 10.4992 10.1159 -4.5093 20 1 11.6010 9.3789 -3.8399 21 1 10.5984 9.9278 -5.9790 22 1 10.6040 11.5617 -4.1869 23 6 5.4501 2.9733 0.0000 24 6 6.6777 2.0992 0.0006 25 6 4.0513 2.5283 -0.0004 26 6 3.4262 1.2819 0.0005 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2086 2.3139 0.0005 31 1 1.2970 4.5114 0.0011 32 1 5.9431 6.3970 1.6389 33 1 6.9643 5.0136 2.0990 34 1 7.7008 6.4594 1.3667 35 1 5.8694 5.9727 -1.7735 36 1 8.2977 7.1908 -0.6299 37 1 8.2935 5.9916 -1.9453 38 1 6.9272 7.5221 -3.3374 39 1 6.9310 8.7218 -2.0223 40 1 7.7625 10.6881 -5.0230 41 1 6.9744 1.8888 -1.0269 42 1 7.4896 2.6133 0.5151 43 1 6.4572 1.1634 0.5140 44 1 4.0167 0.3777 0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184087573.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:20 Heat of formation + Delta-G solvation = -41.184214 kcal Electronic energy + Delta-G solvation = -23895.018476 eV Core-core repulsion = 20391.850493 eV Total energy + Delta-G solvation = -3503.167983 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.53285 -40.65437 -38.36367 -37.36167 -35.58918 -34.76299 -32.81406 -31.56158 -30.19436 -29.64340 -28.30781 -27.75894 -26.27766 -24.60797 -23.48858 -22.49469 -21.73908 -20.99555 -19.09583 -18.49150 -18.12013 -17.62885 -17.30487 -16.69939 -16.55739 -16.46555 -16.04971 -15.82197 -15.18381 -14.96930 -14.51730 -14.32049 -14.15318 -14.03584 -13.99602 -13.73919 -13.49920 -13.30211 -13.20916 -13.01727 -12.94034 -12.85797 -12.66616 -12.40826 -12.23877 -11.85611 -11.80453 -11.69718 -11.42684 -11.24974 -10.86842 -10.57425 -9.40902 -9.21309 -8.96530 -8.20073 -6.31773 -0.21193 0.32507 1.22334 1.41160 1.41737 1.55093 1.69525 2.28452 2.40779 2.60223 3.11918 3.13635 3.38631 3.60314 3.79212 3.85979 4.04575 4.17338 4.19257 4.28265 4.34119 4.43748 4.44341 4.51251 4.58388 4.65674 4.73115 4.77588 4.78719 4.85606 4.89793 5.00950 5.05106 5.08277 5.14606 5.19333 5.29878 5.38639 5.43768 5.50318 5.64947 5.77184 6.03467 6.11995 6.24964 6.37900 6.41352 6.85938 7.37687 8.92512 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025506 B = 0.002514 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.516951 B =11135.166093 C =11522.364777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.107 3.893 4 C -0.168 4.168 5 C -0.072 4.072 6 C -0.008 4.008 7 O -0.197 6.197 8 C 0.032 3.968 9 C 0.159 3.841 10 H 0.089 0.911 11 C -0.135 4.135 12 N -0.692 5.692 13 C 0.084 3.916 14 C 0.031 3.969 15 C -0.540 4.540 16 H 0.065 0.935 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.969 3.031 20 H -0.259 1.259 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.182 4.182 24 C -0.081 4.081 25 C -0.102 4.102 26 C -0.124 4.124 27 H 0.120 0.880 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.173 0.827 31 H 0.152 0.848 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.337 0.663 36 H 0.069 0.931 37 H 0.027 0.973 38 H -0.013 1.013 39 H -0.007 1.007 40 H 0.263 0.737 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.321 -21.681 12.171 27.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.062 3.938 4 C -0.186 4.186 5 C -0.090 4.090 6 C -0.055 4.055 7 O -0.099 6.099 8 C -0.017 4.017 9 C 0.050 3.950 10 H 0.107 0.893 11 C -0.193 4.193 12 N -0.323 5.323 13 C -0.044 4.044 14 C -0.007 4.007 15 C -0.579 4.579 16 H 0.083 0.917 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.794 3.206 20 H -0.182 1.182 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.184 4.184 24 C -0.138 4.138 25 C -0.103 4.103 26 C -0.142 4.142 27 H 0.138 0.862 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.190 0.810 31 H 0.170 0.830 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.155 0.845 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.006 0.994 39 H 0.012 0.988 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.465 -20.994 12.553 27.453 hybrid contribution 0.489 0.184 -1.214 1.322 sum -11.976 -20.810 11.338 26.552 Atomic orbital electron populations 1.23406 0.76159 1.05820 1.02513 1.86068 1.23641 1.25861 1.88934 1.18777 0.91731 0.85116 0.98170 1.21323 1.01670 0.89867 1.05769 1.20045 0.88430 0.99652 1.00922 1.20029 0.92905 0.85178 1.07388 1.84014 1.15060 1.34263 1.76604 1.22399 0.83469 0.93417 1.02368 1.20360 0.89778 0.89283 0.95541 0.89327 1.21802 1.02533 1.01268 0.93658 1.60640 1.17449 1.35707 1.18553 1.21892 0.88770 0.96306 0.97437 1.18925 0.95720 0.93256 0.92771 1.21636 0.93553 1.18712 1.23992 0.91680 1.26027 1.00531 0.96903 0.96601 1.70129 1.28663 1.27222 1.31379 0.85336 0.79211 0.78103 0.77994 1.18245 1.20464 1.20473 1.21154 0.94576 0.92773 1.09882 1.20282 0.92078 0.98397 1.03005 1.19676 0.92973 0.93490 1.04129 1.19700 0.92005 0.96407 1.06120 0.86205 0.91315 0.91554 0.81021 0.82986 0.92978 0.90175 0.91312 0.84526 0.91252 0.95491 0.99419 0.98846 0.92797 0.90809 0.90071 0.89901 0.83894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -5.90 10.49 -93.24 -0.98 -6.88 16 3 C 0.11 2.23 6.68 22.48 0.15 2.38 16 4 C -0.17 -3.04 9.01 22.39 0.20 -2.84 16 5 C -0.07 -1.62 10.05 22.32 0.22 -1.40 16 6 C -0.01 -0.24 7.41 22.97 0.17 -0.07 16 7 O -0.20 -6.55 10.59 -9.87 -0.10 -6.65 16 8 C 0.03 0.95 5.72 24.72 0.14 1.09 16 9 C 0.16 4.72 2.90 44.17 0.13 4.85 16 10 H 0.09 2.35 6.72 -2.39 -0.02 2.34 16 11 C -0.13 -3.60 9.40 71.98 0.68 -2.92 16 12 N -0.69 -25.89 6.30 -495.42 -3.12 -29.02 16 13 C 0.08 3.53 5.42 86.30 0.47 4.00 16 14 C 0.03 1.67 5.23 29.85 0.16 1.82 16 15 C -0.54 -30.94 9.11 25.60 0.23 -30.71 16 16 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 17 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 18 N -0.93 -57.90 13.29 21.45 0.28 -57.61 16 19 Si 0.97 44.48 29.54 68.60 2.03 46.50 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 C -0.18 -4.84 6.35 -18.59 -0.12 -4.95 16 24 C -0.08 -1.58 9.93 71.24 0.71 -0.87 16 25 C -0.10 -2.78 6.38 -20.21 -0.13 -2.91 16 26 C -0.12 -2.91 10.03 22.54 0.23 -2.68 16 27 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 0.43 7.65 -2.39 -0.02 0.41 16 29 H 0.07 0.45 7.65 -2.38 -0.02 0.43 16 30 H 0.17 1.81 6.26 -2.91 -0.02 1.80 16 31 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.83 7.45 -2.39 -0.02 1.81 16 35 H 0.34 13.10 8.35 -89.70 -0.75 12.35 16 36 H 0.07 2.81 7.44 -2.39 -0.02 2.79 16 37 H 0.03 1.08 8.06 -2.39 -0.02 1.06 16 38 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 39 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.08 1.38 7.41 -2.39 -0.02 1.36 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -71.37 366.56 3.17 -68.20 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.25 Total: 19.13 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 4.81 Total: -33.67 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -2.84 Total: -86.63 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -1.08 Total: -13.53 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -71.37 3.17 -68.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184087573.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.019 kcal (2) G-P(sol) polarization free energy of solvation -71.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds