Wall clock time and date at job start Tue Mar 31 2020 08:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37979 * 119.81957 * 2 1 4 4 C 1.39245 * 120.23707 * 179.97438 * 3 2 1 5 5 C 1.38921 * 118.87462 * 359.75075 * 4 3 2 6 6 C 1.37702 * 120.79064 * 0.41204 * 5 4 3 7 7 C 1.38237 * 119.82476 * 179.72356 * 2 1 3 8 8 C 1.50697 * 120.11787 * 0.13853 * 7 2 1 9 9 C 1.51652 * 107.03700 * 180.56562 * 5 4 3 10 10 H 1.09001 * 110.93559 * 257.21182 * 9 5 4 11 11 C 1.50697 * 110.94155 * 133.56150 * 9 5 4 12 12 O 1.21281 * 119.99995 * 359.97438 * 11 9 5 13 13 N 1.34779 * 119.99540 * 180.02562 * 11 9 5 14 14 C 1.46491 * 120.00233 * 359.97438 * 13 11 9 15 15 C 1.46500 * 119.99457 * 179.97438 * 13 11 9 16 16 H 1.08996 * 109.47767 * 0.02562 * 15 13 11 17 17 C 1.53011 * 109.46835 * 119.99884 * 15 13 11 18 18 C 1.50697 * 109.47214 * 239.99757 * 15 13 11 19 19 H 1.08000 * 120.00266 * 0.02562 * 18 15 13 20 20 C 1.37877 * 120.00211 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99845 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 120.00301 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47089 * 59.99360 * 22 20 18 24 24 H 1.48498 * 109.47367 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46817 * 299.99515 * 22 20 18 26 26 C 1.54703 * 101.92530 * 15.36190 * 9 5 4 27 27 O 1.36129 * 129.89813 * 179.09420 * 4 3 2 28 28 H 1.08999 * 109.47015 * 90.00482 * 1 2 3 29 29 H 1.09000 * 109.46646 * 209.99634 * 1 2 3 30 30 H 1.09000 * 109.47248 * 330.00352 * 1 2 3 31 31 H 1.08004 * 119.88168 * 359.97438 * 3 2 1 32 32 H 1.08006 * 120.01084 * 179.72490 * 6 5 4 33 33 H 1.09003 * 109.47016 * 90.00439 * 8 7 2 34 34 H 1.08997 * 109.47155 * 209.99832 * 8 7 2 35 35 H 1.08999 * 109.47129 * 330.00228 * 8 7 2 36 36 H 1.09004 * 109.47641 * 90.00288 * 14 13 11 37 37 H 1.09007 * 109.47378 * 210.00417 * 14 13 11 38 38 H 1.09006 * 109.47574 * 330.00275 * 14 13 11 39 39 H 1.08997 * 109.46844 * 179.97438 * 17 15 13 40 40 H 1.08992 * 109.46976 * 299.99989 * 17 15 13 41 41 H 1.09003 * 109.46909 * 59.99991 * 17 15 13 42 42 H 0.97001 * 120.00421 * 180.02562 * 21 20 18 43 43 H 1.09006 * 110.74834 * 93.04244 * 26 9 5 44 44 H 1.08998 * 110.75194 * 216.38470 * 26 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1932 1.1971 0.0000 4 6 3.5856 1.2072 0.0005 5 6 4.2653 -0.0043 0.0064 6 6 3.5785 -1.1979 0.0030 7 6 2.1946 -1.1993 0.0058 8 6 1.4398 -2.5036 0.0089 9 6 5.7472 0.3176 0.0198 10 1 6.1846 0.1803 -0.9691 11 6 6.4702 -0.5161 1.0461 12 8 5.8549 -1.3124 1.7231 13 7 7.8003 -0.3761 1.2122 14 6 8.5433 0.5861 0.3948 15 6 8.5031 -1.1862 2.2102 16 1 7.7910 -1.8388 2.7153 17 6 9.5703 -2.0360 1.5174 18 6 9.1595 -0.2808 3.2203 19 1 9.0626 0.7909 3.1283 20 6 9.8839 -0.8205 4.2619 21 7 10.0015 -2.1256 4.3742 22 14 10.6970 0.3018 5.5144 23 1 9.6608 1.1258 6.1870 24 1 11.4095 -0.5194 6.5260 25 1 11.6668 1.1911 4.8260 26 6 5.7461 1.8117 0.4212 27 8 4.4511 2.2578 -0.0159 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6483 2.1296 -0.0004 32 1 4.1197 -2.1325 0.0031 33 1 1.2600 -2.8218 -1.0180 34 1 2.0270 -3.2619 0.5267 35 1 0.4864 -2.3704 0.5202 36 1 8.5628 1.5525 0.8987 37 1 9.5637 0.2302 0.2520 38 1 8.0564 0.6918 -0.5748 39 1 10.0935 -2.6384 2.2600 40 1 9.0955 -2.6908 0.7869 41 1 10.2825 -1.3837 1.0120 42 1 10.5108 -2.5054 5.1072 43 1 5.8483 1.9215 1.5009 44 1 6.5367 2.3520 -0.0994 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184406879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:29 Heat of formation + Delta-G solvation = -42.066949 kcal Electronic energy + Delta-G solvation = -25249.461943 eV Core-core repulsion = 21746.255682 eV Total energy + Delta-G solvation = -3503.206261 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.30869 -38.87008 -38.02209 -35.43249 -33.29102 -32.81156 -31.91986 -31.03421 -29.12151 -26.91531 -26.40028 -26.13821 -25.25957 -23.56585 -22.29329 -21.03586 -20.24209 -18.41560 -17.20897 -16.85465 -16.43408 -16.34163 -15.48152 -15.14029 -14.72372 -14.59398 -14.24572 -14.04434 -13.93451 -13.63585 -13.04873 -12.85944 -12.77440 -12.67846 -12.48291 -12.28852 -12.03331 -11.96598 -11.76200 -11.58964 -11.45628 -11.26209 -11.08707 -10.85782 -10.76419 -10.62531 -10.44937 -10.29688 -10.19488 -9.24119 -9.03327 -8.60256 -8.46078 -7.86118 -7.66758 -6.10555 -4.18975 1.35861 1.51022 3.19190 3.25769 3.29408 3.31184 3.33740 3.65206 3.97272 4.36863 4.41392 4.65777 4.87258 4.95125 4.99455 5.05896 5.18349 5.21300 5.28556 5.38127 5.45228 5.48908 5.62100 5.64345 5.70319 5.74328 5.80589 5.85202 5.96807 6.00767 6.20729 6.24199 6.36840 6.55860 6.67905 6.71863 6.77121 6.77486 7.00401 7.27901 7.36338 7.46378 7.66949 7.96755 8.14616 8.44665 8.77893 8.96432 9.47689 10.94711 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020730 B = 0.003753 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.406795 B = 7457.944856 C = 7798.332521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.056 4.056 3 C -0.142 4.142 4 C 0.103 3.897 5 C -0.146 4.146 6 C -0.035 4.035 7 C -0.121 4.121 8 C -0.109 4.109 9 C -0.102 4.102 10 H 0.114 0.886 11 C 0.513 3.487 12 O -0.537 6.537 13 N -0.591 5.591 14 C 0.081 3.919 15 C 0.259 3.741 16 H 0.064 0.936 17 C -0.147 4.147 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.888 5.888 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.066 3.934 27 O -0.304 6.304 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.094 0.906 40 H 0.011 0.989 41 H 0.030 0.970 42 H 0.264 0.736 43 H 0.084 0.916 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.638 4.703 -11.856 17.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.057 4.057 3 C -0.161 4.161 4 C 0.058 3.942 5 C -0.147 4.147 6 C -0.053 4.053 7 C -0.121 4.121 8 C -0.165 4.165 9 C -0.123 4.123 10 H 0.132 0.868 11 C 0.298 3.702 12 O -0.414 6.414 13 N -0.322 5.322 14 C -0.063 4.063 15 C 0.159 3.841 16 H 0.081 0.919 17 C -0.206 4.206 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 C -0.009 4.009 27 O -0.219 6.219 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.030 0.970 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.864 4.355 -11.408 17.737 hybrid contribution 0.989 0.637 0.730 1.385 sum -11.875 4.992 -10.678 16.732 Atomic orbital electron populations 1.20836 0.90917 1.02943 1.02293 1.19369 0.95749 0.91642 0.98896 1.19941 0.89626 0.98329 1.08154 1.19483 0.91361 0.86060 0.97254 1.20219 0.93241 0.93931 1.07303 1.20202 0.92729 0.97033 0.95328 1.19586 0.93120 0.94957 1.04459 1.20751 0.99826 0.94055 1.01918 1.21576 0.93570 0.96083 1.01084 0.86817 1.19832 0.82646 0.83736 0.83946 1.90668 1.66117 1.37498 1.47150 1.48245 1.06313 1.39513 1.38110 1.21665 0.98198 0.93167 0.93256 1.18958 0.90819 0.89813 0.84524 0.91868 1.22102 0.99529 0.99331 0.99615 1.21263 1.32495 0.93110 1.09725 0.92339 1.24888 0.96138 0.95142 0.97549 1.69864 1.40958 1.10054 1.31678 0.86552 0.79435 0.80447 0.80945 1.20238 1.21137 1.20203 1.23842 0.83816 0.91794 1.01452 1.86794 1.19953 1.32714 1.82390 0.91108 0.90925 0.91608 0.85710 0.85493 0.91567 0.91491 0.91381 0.93080 0.90509 0.92952 0.88732 0.96973 0.95061 0.92587 0.89766 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.60 36.01 0.35 -0.67 16 2 C -0.06 -0.71 5.87 -104.71 -0.61 -1.33 16 3 C -0.14 -1.96 9.71 -39.30 -0.38 -2.34 16 4 C 0.10 1.64 7.04 -38.95 -0.27 1.36 16 5 C -0.15 -2.43 5.39 -104.10 -0.56 -2.99 16 6 C -0.03 -0.56 8.74 -39.72 -0.35 -0.91 16 7 C -0.12 -1.65 5.89 -104.57 -0.62 -2.27 16 8 C -0.11 -1.15 9.61 36.00 0.35 -0.80 16 9 C -0.10 -1.62 2.52 -91.56 -0.23 -1.85 16 10 H 0.11 1.54 7.25 -51.93 -0.38 1.16 16 11 C 0.51 10.49 6.96 -10.99 -0.08 10.41 16 12 O -0.54 -13.10 14.50 5.56 0.08 -13.02 16 13 N -0.59 -12.19 2.75 -175.26 -0.48 -12.67 16 14 C 0.08 1.28 8.42 59.84 0.50 1.78 16 15 C 0.26 6.49 2.64 -69.08 -0.18 6.31 16 16 H 0.06 1.85 6.90 -51.93 -0.36 1.50 16 17 C -0.15 -3.45 8.95 37.16 0.33 -3.12 16 18 C -0.53 -14.03 8.37 -34.44 -0.29 -14.32 16 19 H 0.06 1.52 7.65 -52.49 -0.40 1.12 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 21 N -0.89 -24.90 11.32 55.43 0.63 -24.28 16 22 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 C 0.07 0.95 6.59 38.05 0.25 1.20 16 27 O -0.30 -4.70 11.10 -20.15 -0.22 -4.92 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.58 5.93 -51.93 -0.31 0.27 16 30 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 32 H 0.13 2.09 7.81 -52.48 -0.41 1.68 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 35 H 0.07 0.61 5.94 -51.93 -0.31 0.30 16 36 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.08 1.23 6.43 -51.93 -0.33 0.90 16 38 H 0.05 0.64 6.12 -51.93 -0.32 0.32 16 39 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 40 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.08 1.33 7.91 -51.93 -0.41 0.92 16 44 H 0.11 1.25 7.55 -51.93 -0.39 0.85 16 LS Contribution 349.42 15.07 5.27 5.27 Total: -1.00 -31.63 349.42 -8.01 -39.64 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.36 Total: 1.98 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -1.89 Total: -7.86 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.14 Total: -36.95 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.14 Total: -17.95 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.63 -8.01 -39.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184406879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.429 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds