Wall clock time and date at job start Tue Mar 31 2020 08:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37971 * 119.82525 * 2 1 4 4 C 1.39254 * 120.24126 * 180.02562 * 3 2 1 5 5 C 1.38922 * 118.86983 * 0.28907 * 4 3 2 6 6 C 1.37699 * 120.79484 * 359.58454 * 5 4 3 7 7 C 1.38248 * 119.82074 * 179.97438 * 2 1 3 8 8 C 1.50689 * 120.11996 * 359.85476 * 7 2 1 9 9 C 1.51646 * 107.02625 * 179.54337 * 5 4 3 10 10 H 1.09000 * 110.94523 * 102.50751 * 9 5 4 11 11 C 1.50701 * 110.94361 * 226.16858 * 9 5 4 12 12 O 1.21282 * 119.99887 * 359.97438 * 11 9 5 13 13 N 1.34768 * 119.99974 * 179.97438 * 11 9 5 14 14 C 1.46498 * 120.00360 * 359.97438 * 13 11 9 15 15 C 1.46505 * 119.99967 * 179.97438 * 13 11 9 16 16 H 1.09002 * 109.47068 * 0.02562 * 15 13 11 17 17 C 1.52997 * 109.47212 * 240.00033 * 15 13 11 18 18 C 1.50699 * 109.47262 * 119.99946 * 15 13 11 19 19 H 1.08000 * 119.99792 * 0.02562 * 18 15 13 20 20 C 1.37878 * 119.99902 * 179.97438 * 18 15 13 21 21 N 1.31515 * 120.00126 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 119.99745 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47438 * 0.02562 * 22 20 18 24 24 H 1.48491 * 109.47045 * 120.00577 * 22 20 18 25 25 H 1.48501 * 109.46950 * 240.00369 * 22 20 18 26 26 C 1.54709 * 101.90463 * 344.31833 * 9 5 4 27 27 O 1.36128 * 129.88348 * 180.51079 * 4 3 2 28 28 H 1.08999 * 109.47253 * 89.99668 * 1 2 3 29 29 H 1.09000 * 109.47028 * 209.99952 * 1 2 3 30 30 H 1.09001 * 109.46966 * 329.99897 * 1 2 3 31 31 H 1.07998 * 119.88004 * 0.02837 * 3 2 1 32 32 H 1.07989 * 120.01139 * 180.27711 * 6 5 4 33 33 H 1.09003 * 109.47564 * 89.99834 * 8 7 2 34 34 H 1.09004 * 109.47322 * 210.00349 * 8 7 2 35 35 H 1.09001 * 109.47416 * 329.99881 * 8 7 2 36 36 H 1.08992 * 109.47421 * 270.00115 * 14 13 11 37 37 H 1.09007 * 109.46720 * 30.00124 * 14 13 11 38 38 H 1.09003 * 109.47218 * 149.99905 * 14 13 11 39 39 H 1.08998 * 109.47533 * 59.99637 * 17 15 13 40 40 H 1.08996 * 109.47853 * 179.97438 * 17 15 13 41 41 H 1.09002 * 109.47153 * 300.00008 * 17 15 13 42 42 H 0.96999 * 120.00073 * 179.97438 * 21 20 18 43 43 H 1.09004 * 110.74922 * 143.69133 * 26 9 5 44 44 H 1.09003 * 110.75280 * 267.03745 * 26 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1970 0.0000 4 6 3.5857 1.2071 -0.0005 5 6 4.2653 -0.0046 -0.0072 6 6 3.5785 -1.1981 -0.0046 7 6 2.1945 -1.1994 0.0005 8 6 1.4397 -2.5036 0.0044 9 6 5.7471 0.3175 -0.0177 10 1 6.1820 0.1834 0.9728 11 6 6.4730 -0.5192 -1.0395 12 8 5.8598 -1.3183 -1.7152 13 7 7.8035 -0.3796 -1.2025 14 6 8.5441 0.5860 -0.3868 15 6 8.5092 -1.1934 -2.1955 16 1 7.7985 -1.8474 -2.7007 17 6 9.5747 -2.0402 -1.4967 18 6 9.1682 -0.2917 -3.2073 19 1 9.0714 0.7804 -3.1193 20 6 9.8956 -0.8353 -4.2448 21 7 10.0139 -2.1408 -4.3518 22 14 10.7130 0.2824 -5.4986 23 1 10.4310 1.6997 -5.1565 24 1 12.1800 0.0527 -5.4844 25 1 10.1782 -0.0166 -6.8513 26 6 5.7464 1.8100 -0.4248 27 8 4.4510 2.2579 0.0087 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6484 2.1295 0.0005 32 1 4.1196 -2.1326 -0.0054 33 1 1.2554 -2.8199 -1.0223 34 1 2.0291 -3.2631 0.5183 35 1 0.4885 -2.3715 0.5201 36 1 8.5647 1.5503 -0.8944 37 1 8.0545 0.6951 0.5809 38 1 9.5641 0.2308 -0.2400 39 1 9.0981 -2.6924 -0.7648 40 1 10.0995 -2.6461 -2.2353 41 1 10.2854 -1.3859 -0.9918 42 1 10.5253 -2.5232 -5.0819 43 1 6.5363 2.3524 0.0949 44 1 5.8501 1.9158 -1.5047 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184406901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:32 Heat of formation + Delta-G solvation = -42.199358 kcal Electronic energy + Delta-G solvation = -25248.192530 eV Core-core repulsion = 21744.980527 eV Total energy + Delta-G solvation = -3503.212003 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.30879 -38.87155 -38.02264 -35.43408 -33.29225 -32.81360 -31.92122 -31.03538 -29.12360 -26.91578 -26.40147 -26.13961 -25.26397 -23.56676 -22.29413 -21.03634 -20.24382 -18.41700 -17.21187 -16.85466 -16.43488 -16.34427 -15.48992 -15.12968 -14.73508 -14.59529 -14.20285 -14.02700 -13.99488 -13.63739 -13.04197 -12.82756 -12.78765 -12.67814 -12.46892 -12.28433 -12.08038 -11.97114 -11.76720 -11.59916 -11.46008 -11.26295 -11.09868 -10.84943 -10.76554 -10.62386 -10.44256 -10.27729 -10.20745 -9.22651 -9.03406 -8.60291 -8.46912 -7.86028 -7.66769 -6.11102 -4.19286 1.35831 1.51062 3.19187 3.23512 3.29346 3.32140 3.34941 3.65515 3.97176 4.36580 4.41272 4.65645 4.87211 4.94884 4.99420 5.05370 5.17481 5.20822 5.28376 5.37323 5.45560 5.49009 5.61985 5.66942 5.70292 5.73977 5.80649 5.85398 5.96832 5.99925 6.20703 6.24006 6.36594 6.55796 6.67851 6.71627 6.76917 6.77349 7.00274 7.27946 7.36153 7.46335 7.66958 7.96674 8.14335 8.44451 8.78033 8.96435 9.47520 10.94243 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020763 B = 0.003751 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.260694 B = 7462.668926 C = 7804.471950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.056 4.056 3 C -0.142 4.142 4 C 0.104 3.896 5 C -0.146 4.146 6 C -0.035 4.035 7 C -0.121 4.121 8 C -0.108 4.108 9 C -0.102 4.102 10 H 0.114 0.886 11 C 0.513 3.487 12 O -0.537 6.537 13 N -0.590 5.590 14 C 0.081 3.919 15 C 0.258 3.742 16 H 0.064 0.936 17 C -0.147 4.147 18 C -0.526 4.526 19 H 0.060 0.940 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.898 3.102 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.066 3.934 27 O -0.304 6.304 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.011 0.989 40 H 0.094 0.906 41 H 0.030 0.970 42 H 0.263 0.737 43 H 0.113 0.887 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.694 4.769 11.804 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.056 4.056 3 C -0.161 4.161 4 C 0.059 3.941 5 C -0.147 4.147 6 C -0.053 4.053 7 C -0.122 4.122 8 C -0.165 4.165 9 C -0.123 4.123 10 H 0.132 0.868 11 C 0.298 3.702 12 O -0.415 6.415 13 N -0.322 5.322 14 C -0.063 4.063 15 C 0.158 3.842 16 H 0.081 0.919 17 C -0.206 4.206 18 C -0.564 4.564 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.525 5.525 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.009 4.009 27 O -0.219 6.219 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.030 0.970 40 H 0.113 0.887 41 H 0.049 0.951 42 H 0.073 0.927 43 H 0.131 0.869 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.922 4.429 11.365 17.769 hybrid contribution 1.001 0.607 -0.771 1.401 sum -11.921 5.036 10.594 16.725 Atomic orbital electron populations 1.20837 0.90917 1.02762 1.02479 1.19365 0.95746 0.91638 0.98886 1.19937 0.89622 0.98326 1.08185 1.19486 0.91360 0.86055 0.97242 1.20216 0.93240 0.93925 1.07338 1.20199 0.92719 0.97039 0.95324 1.19590 0.93127 0.94953 1.04482 1.20745 0.99548 0.93884 1.02303 1.21579 0.93555 0.96070 1.01101 0.86805 1.19831 0.82648 0.83775 0.83907 1.90668 1.66265 1.37412 1.47105 1.48246 1.06283 1.39273 1.38373 1.21666 0.98224 0.93111 0.93289 1.18969 0.90791 0.89786 0.84647 0.91856 1.22097 0.99535 0.99356 0.99574 1.21339 1.32150 0.93195 1.09754 0.92227 1.24894 0.96171 0.95134 0.97578 1.69884 1.40954 1.09938 1.31764 0.86441 0.78987 0.80719 0.81258 1.19799 1.20915 1.20892 1.23844 0.83788 0.91798 1.01466 1.86786 1.19964 1.32530 1.82577 0.91004 0.90971 0.91651 0.85711 0.85482 0.91298 0.91735 0.91469 0.93071 0.92950 0.90507 0.96976 0.88734 0.95053 0.92706 0.86896 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.60 36.01 0.35 -0.66 16 2 C -0.06 -0.71 5.87 -104.72 -0.61 -1.33 16 3 C -0.14 -1.96 9.71 -39.30 -0.38 -2.34 16 4 C 0.10 1.64 7.04 -38.95 -0.27 1.37 16 5 C -0.15 -2.43 5.39 -104.10 -0.56 -2.99 16 6 C -0.03 -0.56 8.74 -39.72 -0.35 -0.90 16 7 C -0.12 -1.65 5.89 -104.56 -0.62 -2.27 16 8 C -0.11 -1.14 9.61 36.00 0.35 -0.80 16 9 C -0.10 -1.62 2.53 -91.56 -0.23 -1.85 16 10 H 0.11 1.54 7.25 -51.93 -0.38 1.16 16 11 C 0.51 10.49 6.96 -10.99 -0.08 10.41 16 12 O -0.54 -13.10 14.49 5.56 0.08 -13.02 16 13 N -0.59 -12.18 2.75 -175.26 -0.48 -12.66 16 14 C 0.08 1.28 8.42 59.85 0.50 1.78 16 15 C 0.26 6.46 2.64 -69.08 -0.18 6.28 16 16 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 17 C -0.15 -3.45 8.95 37.16 0.33 -3.12 16 18 C -0.53 -13.98 8.37 -34.44 -0.29 -14.27 16 19 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 21 N -0.89 -24.88 11.32 55.43 0.63 -24.26 16 22 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.07 0.95 6.59 38.06 0.25 1.20 16 27 O -0.30 -4.70 11.10 -20.15 -0.22 -4.92 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.55 5.94 -51.93 -0.31 0.24 16 30 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.13 2.10 7.79 -52.49 -0.41 1.69 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 35 H 0.07 0.56 5.95 -51.93 -0.31 0.25 16 36 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.05 0.64 6.11 -51.92 -0.32 0.32 16 38 H 0.08 1.23 6.43 -51.93 -0.33 0.90 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 41 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 42 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.11 1.25 7.54 -51.93 -0.39 0.85 16 44 H 0.08 1.33 7.91 -51.93 -0.41 0.92 16 LS Contribution 349.39 15.07 5.27 5.27 Total: -1.00 -31.66 349.39 -8.01 -39.67 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.36 Total: 1.91 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -1.89 Total: -7.84 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.14 Total: -36.92 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.14 Total: -17.94 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.66 -8.01 -39.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184406901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.533 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds