Wall clock time and date at job start Tue Mar 31 2020 08:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86803 * 120.00172 * 2 1 4 4 H 1.48507 * 109.47008 * 274.98498 * 3 2 1 5 5 H 1.48503 * 109.46923 * 34.98024 * 3 2 1 6 6 H 1.48502 * 109.47291 * 154.98116 * 3 2 1 7 7 C 1.39905 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00112 * 196.28570 * 7 2 1 9 9 C 1.41151 * 120.00132 * 16.28708 * 7 2 1 10 10 C 1.40876 * 120.16325 * 35.93187 * 9 7 2 11 11 C 1.36376 * 119.82830 * 180.24995 * 10 9 7 12 12 C 1.39476 * 120.16438 * 359.47858 * 11 10 9 13 13 N 1.39246 * 119.82841 * 180.29574 * 12 11 10 14 14 C 1.34775 * 119.99309 * 146.69693 * 13 12 11 15 15 O 1.21276 * 120.00484 * 8.01474 * 14 13 12 16 16 C 1.50703 * 119.99499 * 188.01445 * 14 13 12 17 17 H 1.09003 * 109.47305 * 303.81544 * 16 14 13 18 18 O 1.42901 * 109.47241 * 183.81082 * 16 14 13 19 19 C 1.53007 * 109.47178 * 63.81181 * 16 14 13 20 20 C 1.52998 * 109.47220 * 184.44785 * 19 16 14 21 21 C 1.53001 * 109.46767 * 180.02562 * 20 19 16 22 22 C 1.53000 * 109.47148 * 60.00098 * 21 20 19 23 23 C 1.52998 * 109.47206 * 299.99633 * 22 21 20 24 24 C 1.53000 * 109.46830 * 64.44801 * 19 16 14 25 25 C 1.39484 * 120.33697 * 0.27923 * 12 11 10 26 26 C 1.36371 * 120.16580 * 359.97291 * 25 12 11 27 27 H 0.96999 * 119.99795 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.08127 * 0.03265 * 10 9 7 29 29 H 1.07999 * 119.91248 * 179.75554 * 11 10 9 30 30 H 0.96990 * 120.00085 * 326.69035 * 13 12 11 31 31 H 0.96696 * 113.99891 * 299.99777 * 18 16 14 32 32 H 1.09000 * 109.46934 * 304.44785 * 19 16 14 33 33 H 1.09000 * 109.47167 * 299.99857 * 20 19 16 34 34 H 1.08998 * 109.46971 * 59.99999 * 20 19 16 35 35 H 1.09000 * 109.47068 * 299.99805 * 21 20 19 36 36 H 1.08999 * 109.47047 * 179.97438 * 21 20 19 37 37 H 1.09003 * 109.47025 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.47375 * 59.99895 * 22 21 20 39 39 H 1.09000 * 109.47167 * 300.00389 * 23 22 21 40 40 H 1.08995 * 109.47475 * 180.02562 * 23 22 21 41 41 H 1.09006 * 109.47420 * 299.99900 * 24 19 16 42 42 H 1.08993 * 109.47367 * 59.99837 * 24 19 16 43 43 H 1.08000 * 119.91483 * 180.02562 * 25 12 11 44 44 H 1.07999 * 120.08147 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3849 2.1072 -1.3949 5 1 1.4968 2.6200 0.8027 6 1 3.5890 1.4121 0.5921 7 6 2.0082 -1.2116 -0.0005 8 1 3.0557 -1.2305 0.2617 9 6 1.3450 -2.4093 -0.3439 10 6 0.3490 -2.4064 -1.3402 11 6 -0.2911 -3.5666 -1.6629 12 6 0.0458 -4.7559 -1.0170 13 7 -0.6079 -5.9376 -1.3564 14 6 0.0540 -7.1108 -1.3107 15 8 1.1696 -7.1597 -0.8376 16 6 -0.5924 -8.3619 -1.8476 17 1 -1.5475 -8.5209 -1.3472 18 8 0.2634 -9.4808 -1.6076 19 6 -0.8241 -8.2107 -3.3525 20 6 -1.5796 -9.4332 -3.8775 21 6 -1.8107 -9.2822 -5.3824 22 6 -0.4624 -9.1704 -6.0968 23 6 0.2931 -7.9479 -5.5718 24 6 0.5240 -8.0985 -4.0673 25 6 1.0345 -4.7677 -0.0331 26 6 1.6796 -3.6145 0.3039 27 1 -0.4850 0.8401 0.0004 28 1 0.0906 -1.4870 -1.8446 29 1 -1.0576 -3.5651 -2.4237 30 1 -1.5394 -5.9164 -1.6256 31 1 1.1329 -9.4075 -2.0243 32 1 -1.4114 -7.3120 -3.5412 33 1 -0.9923 -10.3319 -3.6888 34 1 -2.5399 -9.5131 -3.3682 35 1 -2.3978 -8.3835 -5.5715 36 1 -2.3485 -10.1534 -5.7566 37 1 -0.6270 -9.0633 -7.1690 38 1 0.1247 -10.0691 -5.9077 39 1 -0.2939 -7.0492 -5.7608 40 1 1.2535 -7.8679 -6.0810 41 1 1.0623 -7.2275 -3.6933 42 1 1.1112 -8.9971 -3.8786 43 1 1.2902 -5.6927 0.4623 44 1 2.4452 -3.6253 1.0656 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189610014.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:35 Heat of formation + Delta-G solvation = -94.256334 kcal Electronic energy + Delta-G solvation = -24784.849951 eV Core-core repulsion = 21279.380588 eV Total energy + Delta-G solvation = -3505.469362 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.45588 -38.68546 -37.30077 -35.95775 -34.43931 -33.04513 -31.54554 -30.93979 -29.62488 -29.09110 -26.91393 -24.65410 -22.92714 -22.22438 -21.50281 -20.78047 -19.95359 -19.61578 -17.72824 -17.28249 -16.51044 -16.44455 -15.39093 -15.21324 -15.15115 -14.57878 -14.27983 -14.17952 -13.98221 -13.77587 -13.03875 -12.88515 -12.61648 -12.50652 -12.33129 -12.15660 -11.91691 -11.83574 -11.50186 -11.44773 -11.24147 -11.18153 -11.01406 -10.92830 -10.66992 -10.57879 -10.37706 -10.17284 -10.01634 -9.75439 -9.31080 -8.98723 -8.73927 -7.59466 -6.95331 -6.73095 -4.32445 2.49056 2.96116 3.03292 3.09190 3.13173 3.25768 3.61957 3.96433 4.22197 4.42439 4.48286 4.57322 4.63717 4.91244 4.95621 5.05434 5.15461 5.22667 5.32144 5.35227 5.46320 5.48593 5.62197 5.67155 5.85092 5.91541 5.95146 5.98523 6.07587 6.12410 6.15534 6.27303 6.40972 6.68339 6.86521 7.01667 7.15842 7.25052 7.43639 7.55231 7.65692 7.81957 8.02550 8.20221 8.26693 8.55753 8.67338 8.87873 8.95937 10.24473 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024875 B = 0.003108 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.343494 B = 9006.305393 C = 9513.016440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.078 3.922 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.472 4.472 8 H 0.078 0.922 9 C 0.114 3.886 10 C -0.144 4.144 11 C -0.115 4.115 12 C -0.001 4.001 13 N -0.646 5.646 14 C 0.472 3.528 15 O -0.526 6.526 16 C 0.097 3.903 17 H 0.119 0.881 18 O -0.538 6.538 19 C -0.112 4.112 20 C -0.109 4.109 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.084 4.084 26 C -0.207 4.207 27 H 0.279 0.721 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.395 0.605 31 H 0.380 0.620 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.114 0.886 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 -13.904 -10.218 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.503 4.503 8 H 0.096 0.904 9 C 0.112 3.888 10 C -0.164 4.164 11 C -0.135 4.135 12 C -0.094 4.094 13 N -0.290 5.290 14 C 0.258 3.742 15 O -0.402 6.402 16 C 0.034 3.966 17 H 0.136 0.864 18 O -0.344 6.344 19 C -0.131 4.131 20 C -0.146 4.146 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.160 4.160 25 C -0.104 4.104 26 C -0.228 4.228 27 H 0.090 0.910 28 H 0.126 0.874 29 H 0.109 0.891 30 H 0.229 0.771 31 H 0.230 0.770 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.131 0.869 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.208 -14.029 -9.554 17.754 hybrid contribution 0.197 1.220 -0.393 1.297 sum -5.010 -12.809 -9.947 16.974 Atomic orbital electron populations 1.69823 1.07441 1.29112 1.36463 1.25827 0.94714 1.00958 0.92363 0.86338 0.80634 0.80918 0.79029 1.19451 1.20390 1.18634 1.19474 0.97653 0.91072 1.42064 0.90350 1.17649 0.90359 0.92213 0.88620 1.20713 1.00531 0.95768 0.99419 1.20194 1.01008 0.92634 0.99645 1.17234 1.03723 0.84505 1.03901 1.42992 1.13776 1.05914 1.66340 1.21438 0.86954 0.85562 0.80220 1.90674 1.19868 1.85247 1.44445 1.21889 0.94531 0.85059 0.95128 0.86371 1.86528 1.29622 1.40033 1.78186 1.21802 0.98033 0.99972 0.93286 1.21514 0.99981 0.97815 0.95332 1.21540 0.97220 1.01691 0.95247 1.21549 0.96398 0.98471 0.99318 1.21470 1.00383 0.98270 0.95244 1.21595 0.96317 1.02427 0.95617 1.20584 0.96309 0.97939 0.95553 1.20832 1.05128 0.93355 1.03437 0.91019 0.87394 0.89127 0.77105 0.76991 0.89810 0.91100 0.91857 0.91992 0.92063 0.92224 0.92041 0.91830 0.91892 0.91243 0.91673 0.86860 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.78 11.68 55.55 0.65 -20.14 16 2 C 0.08 1.97 5.09 -17.34 -0.09 1.88 16 3 Si 0.91 18.79 29.59 -169.99 -5.03 13.76 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 7 C -0.47 -12.60 8.98 -37.85 -0.34 -12.94 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 9 C 0.11 3.04 5.42 -106.80 -0.58 2.46 16 10 C -0.14 -3.64 8.60 -39.26 -0.34 -3.98 16 11 C -0.11 -2.54 9.89 -39.79 -0.39 -2.93 16 12 C 0.00 -0.03 6.36 -83.57 -0.53 -0.56 16 13 N -0.65 -10.82 5.16 -9.74 -0.05 -10.87 16 14 C 0.47 7.78 5.99 -10.98 -0.07 7.71 16 15 O -0.53 -10.84 13.53 -14.32 -0.19 -11.03 16 16 C 0.10 1.16 3.15 -27.88 -0.09 1.08 16 17 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 18 O -0.54 -6.97 12.40 -55.11 -0.68 -7.65 16 19 C -0.11 -1.10 2.00 -90.62 -0.18 -1.28 16 20 C -0.11 -0.91 5.10 -26.73 -0.14 -1.05 16 21 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 22 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 23 C -0.12 -1.08 5.92 -26.76 -0.16 -1.24 16 24 C -0.12 -1.30 4.60 -26.76 -0.12 -1.42 16 25 C -0.08 -2.01 8.66 -39.79 -0.34 -2.36 16 26 C -0.21 -5.28 9.74 -39.26 -0.38 -5.66 16 27 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 28 H 0.11 2.78 6.98 -52.48 -0.37 2.41 16 29 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 30 H 0.40 5.20 8.72 -40.82 -0.36 4.84 16 31 H 0.38 4.44 6.97 45.56 0.32 4.75 16 32 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 33 H 0.07 0.63 7.81 -51.93 -0.41 0.23 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.93 7.36 -51.93 -0.38 0.55 16 42 H 0.06 0.64 6.72 -51.93 -0.35 0.30 16 43 H 0.11 2.72 5.95 -52.49 -0.31 2.41 16 44 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 350.91 15.07 5.29 5.29 Total: -1.00 -30.03 350.91 -10.13 -40.16 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -6.04 Total: 12.94 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -4.07 Total: -22.47 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.60 Total: -31.01 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.88 Total: -18.68 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.03 -10.13 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189610014.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.095 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds