Wall clock time and date at job start Tue Mar 31 2020 08:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86797 * 120.00027 * 2 1 4 4 H 1.48499 * 109.47276 * 274.68160 * 3 2 1 5 5 H 1.48497 * 109.47102 * 34.68383 * 3 2 1 6 6 H 1.48499 * 109.47327 * 154.68001 * 3 2 1 7 7 C 1.39901 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99861 * 197.47966 * 7 2 1 9 9 C 1.41150 * 120.00337 * 17.47571 * 7 2 1 10 10 C 1.40870 * 120.16544 * 25.14144 * 9 7 2 11 11 C 1.36369 * 119.83042 * 180.24905 * 10 9 7 12 12 C 1.39481 * 120.16991 * 359.48946 * 11 10 9 13 13 N 1.39234 * 119.83485 * 180.29250 * 12 11 10 14 14 C 1.34778 * 120.00164 * 33.23898 * 13 12 11 15 15 O 1.21278 * 119.99722 * 5.18677 * 14 13 12 16 16 C 1.50699 * 120.00045 * 185.18871 * 14 13 12 17 17 H 1.08992 * 109.47320 * 55.00089 * 16 14 13 18 18 O 1.42902 * 109.47082 * 174.99987 * 16 14 13 19 19 C 1.53001 * 109.47204 * 294.99884 * 16 14 13 20 20 C 1.52998 * 109.47128 * 300.00271 * 19 16 14 21 21 C 1.52998 * 109.47151 * 179.97438 * 20 19 16 22 22 C 1.52999 * 109.46936 * 60.00206 * 21 20 19 23 23 C 1.52998 * 109.47032 * 299.99866 * 22 21 20 24 24 C 1.52998 * 109.47151 * 60.00265 * 23 22 21 25 25 C 1.39485 * 120.33223 * 0.27220 * 12 11 10 26 26 C 1.36376 * 120.16776 * 359.97438 * 25 12 11 27 27 H 0.96996 * 120.00098 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.08438 * 0.03981 * 10 9 7 29 29 H 1.08002 * 119.91438 * 179.75583 * 11 10 9 30 30 H 0.97001 * 120.00014 * 213.24223 * 13 12 11 31 31 H 0.96708 * 113.99784 * 59.99637 * 18 16 14 32 32 H 1.09004 * 109.46610 * 59.99857 * 19 16 14 33 33 H 1.09005 * 109.47223 * 300.00087 * 20 19 16 34 34 H 1.09011 * 109.47297 * 59.99764 * 20 19 16 35 35 H 1.08997 * 109.47540 * 299.99688 * 21 20 19 36 36 H 1.09005 * 109.46884 * 179.97438 * 21 20 19 37 37 H 1.09001 * 109.46834 * 179.97438 * 22 21 20 38 38 H 1.08998 * 109.47289 * 59.99950 * 22 21 20 39 39 H 1.08998 * 109.47152 * 300.00168 * 23 22 21 40 40 H 1.09000 * 109.47002 * 180.02562 * 23 22 21 41 41 H 1.09005 * 109.47011 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.47172 * 59.99915 * 24 23 22 43 43 H 1.08000 * 119.91516 * 179.97438 * 25 12 11 44 44 H 1.07991 * 120.08671 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3912 2.1036 -1.3954 5 1 1.4931 2.6220 0.7967 6 1 3.5862 1.4136 0.5988 7 6 2.0082 -1.2116 -0.0005 8 1 3.0508 -1.2333 0.2804 9 6 1.3514 -2.4056 -0.3681 10 6 0.2237 -2.3625 -1.2113 11 6 -0.4087 -3.5199 -1.5581 12 6 0.0647 -4.7451 -1.0887 13 7 -0.5828 -5.9230 -1.4520 14 6 -1.1594 -6.0283 -2.6657 15 8 -1.0342 -5.1348 -3.4760 16 6 -1.9596 -7.2564 -3.0157 17 1 -2.7377 -7.4084 -2.2678 18 8 -2.5611 -7.0829 -4.3003 19 6 -1.0358 -8.4757 -3.0457 20 6 0.0565 -8.2623 -4.0956 21 6 0.9806 -9.4812 -4.1252 22 6 0.1686 -10.7284 -4.4803 23 6 -0.9237 -10.9418 -3.4304 24 6 -1.8478 -9.7228 -3.4008 25 6 1.1836 -4.7963 -0.2575 26 6 1.8235 -3.6469 0.1019 27 1 -0.4850 0.8400 0.0004 28 1 -0.1411 -1.4150 -1.5795 29 1 -1.2757 -3.4881 -2.2013 30 1 -0.6189 -6.6678 -0.8316 31 1 -1.9262 -6.9423 -5.0161 32 1 -0.5769 -8.6080 -2.0658 33 1 -0.4023 -8.1298 -5.0755 34 1 0.6353 -7.3739 -3.8424 35 1 1.4395 -9.6132 -3.1453 36 1 1.7585 -9.3293 -4.8735 37 1 0.8271 -11.5967 -4.5018 38 1 -0.2902 -10.5964 -5.4602 39 1 -0.4649 -11.0738 -2.4505 40 1 -1.5019 -11.8305 -3.6831 41 1 -2.6257 -9.8747 -2.6525 42 1 -2.3066 -9.5908 -4.3807 43 1 1.5441 -5.7486 0.1024 44 1 2.6900 -3.6881 0.7452 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189610033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:39 Heat of formation + Delta-G solvation = -95.079023 kcal Electronic energy + Delta-G solvation = -24755.524383 eV Core-core repulsion = 21250.019346 eV Total energy + Delta-G solvation = -3505.505037 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.42084 -38.64150 -37.27357 -35.93407 -34.45310 -33.06098 -31.54499 -30.95128 -29.53507 -29.09404 -26.90459 -24.68343 -22.93473 -22.20137 -21.37891 -20.93741 -19.93445 -19.45467 -17.70870 -17.32501 -16.47556 -16.36829 -15.55136 -15.29450 -15.06475 -14.47537 -14.29034 -14.06584 -13.94225 -13.80389 -13.02639 -12.91652 -12.62272 -12.48691 -12.31848 -12.08374 -11.87316 -11.83798 -11.45910 -11.37016 -11.25186 -11.13483 -11.08269 -11.00549 -10.70080 -10.66268 -10.36851 -10.14739 -9.86482 -9.63606 -9.35410 -9.04104 -8.81799 -7.54382 -7.01638 -6.75050 -4.31357 2.51750 2.96674 3.06704 3.09512 3.10920 3.33305 3.65377 3.92402 4.24449 4.41944 4.47882 4.57663 4.62328 4.90677 4.96576 5.04947 5.16282 5.22797 5.31868 5.34869 5.45723 5.49259 5.66470 5.69879 5.84141 5.90763 5.93895 5.97501 6.06710 6.12029 6.14664 6.26359 6.36687 6.77067 6.95770 7.02715 7.12797 7.27119 7.46998 7.57816 7.67019 7.94015 8.04002 8.18383 8.29480 8.60825 8.72391 8.86880 8.98470 10.16786 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.030710 B = 0.002986 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.528737 B = 9374.338195 C = 9745.923140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.106 3.894 10 C -0.155 4.155 11 C -0.085 4.085 12 C -0.008 4.008 13 N -0.646 5.646 14 C 0.471 3.529 15 O -0.524 6.524 16 C 0.097 3.903 17 H 0.119 0.881 18 O -0.537 6.537 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.108 4.108 25 C -0.104 4.104 26 C -0.216 4.216 27 H 0.281 0.719 28 H 0.119 0.881 29 H 0.101 0.899 30 H 0.393 0.607 31 H 0.380 0.620 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 -17.605 -4.864 18.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.103 3.897 10 C -0.175 4.175 11 C -0.105 4.105 12 C -0.100 4.100 13 N -0.291 5.291 14 C 0.257 3.743 15 O -0.401 6.401 16 C 0.034 3.966 17 H 0.137 0.863 18 O -0.343 6.343 19 C -0.132 4.132 20 C -0.160 4.160 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.146 4.146 25 C -0.124 4.124 26 C -0.236 4.236 27 H 0.092 0.908 28 H 0.137 0.863 29 H 0.119 0.881 30 H 0.226 0.774 31 H 0.229 0.771 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.749 -16.884 -5.115 17.855 hybrid contribution 0.847 0.513 0.197 1.009 sum -1.903 -16.371 -4.918 17.199 Atomic orbital electron populations 1.69843 1.07597 1.29307 1.34751 1.25935 0.94748 1.01404 0.92292 0.86286 0.80543 0.80618 0.79203 1.19297 1.20274 1.18562 1.19569 0.98010 0.91273 1.39897 0.90345 1.17666 0.91365 0.92090 0.88536 1.20979 0.99247 0.96749 1.00515 1.20422 0.99228 0.91320 0.99576 1.17168 0.98697 0.84587 1.09577 1.43030 1.54497 1.16053 1.15476 1.21398 0.81159 0.89453 0.82293 1.90714 1.59887 1.40918 1.48555 1.21900 0.95761 0.91175 0.87782 0.86308 1.86538 1.37146 1.94468 1.16135 1.21812 0.96078 0.94589 1.00700 1.21623 0.96723 0.98747 0.98889 1.21484 0.97699 0.94334 1.01833 1.21550 0.97446 0.97715 0.99050 1.21540 0.97056 0.97701 0.99390 1.21498 0.97373 0.93147 1.02583 1.20015 0.94694 0.97125 1.00541 1.20536 1.03631 0.92599 1.06831 0.90793 0.86277 0.88079 0.77364 0.77054 0.89940 0.91691 0.91232 0.91883 0.91916 0.92235 0.92020 0.92036 0.92057 0.91831 0.91044 0.89251 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.62 10.97 55.55 0.61 -20.01 16 2 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.16 9.03 -37.86 -0.34 -12.51 16 8 H 0.08 1.99 7.90 -52.48 -0.41 1.58 16 9 C 0.11 2.85 5.57 -106.80 -0.59 2.25 16 10 C -0.16 -4.18 8.63 -39.26 -0.34 -4.52 16 11 C -0.09 -2.14 8.57 -39.79 -0.34 -2.49 16 12 C -0.01 -0.18 6.29 -83.57 -0.53 -0.70 16 13 N -0.65 -11.08 5.27 -9.74 -0.05 -11.13 16 14 C 0.47 8.03 5.63 -10.99 -0.06 7.97 16 15 O -0.52 -11.29 13.97 -14.30 -0.20 -11.49 16 16 C 0.10 1.20 3.19 -27.88 -0.09 1.11 16 17 H 0.12 1.31 8.14 -51.93 -0.42 0.88 16 18 O -0.54 -7.21 12.28 -55.09 -0.68 -7.88 16 19 C -0.11 -1.10 2.03 -90.62 -0.18 -1.29 16 20 C -0.12 -1.29 4.65 -26.73 -0.12 -1.41 16 21 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 22 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 23 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 24 C -0.11 -0.91 5.06 -26.73 -0.14 -1.05 16 25 C -0.10 -2.25 9.89 -39.79 -0.39 -2.64 16 26 C -0.22 -5.22 9.74 -39.26 -0.38 -5.60 16 27 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 28 H 0.12 3.34 6.19 -52.48 -0.32 3.02 16 29 H 0.10 2.57 6.38 -52.49 -0.33 2.24 16 30 H 0.39 5.22 8.42 -40.82 -0.34 4.88 16 31 H 0.38 4.57 7.08 45.56 0.32 4.89 16 32 H 0.08 0.75 7.77 -51.93 -0.40 0.35 16 33 H 0.06 0.66 6.78 -51.93 -0.35 0.30 16 34 H 0.07 0.93 7.22 -51.92 -0.37 0.55 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.65 7.68 -51.93 -0.40 0.25 16 43 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 349.57 15.07 5.27 5.27 Total: -1.00 -30.36 349.57 -10.14 -40.50 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -5.99 Total: 13.43 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -4.08 Total: -22.42 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.56 Total: -31.14 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.88 Total: -19.37 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.36 -10.14 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189610033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.575 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds