Wall clock time and date at job start Tue Mar 31 2020 08:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00033 * 2 1 4 4 H 1.48500 * 109.47252 * 240.00535 * 3 2 1 5 5 H 1.48499 * 109.47517 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47180 * 120.00549 * 3 2 1 7 7 C 1.37873 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00496 * 179.97438 * 7 2 1 9 9 C 1.50710 * 120.00035 * 359.97438 * 7 2 1 10 10 O 1.42898 * 113.25262 * 47.05335 * 9 7 2 11 11 C 1.53510 * 114.17012 * 179.97438 * 9 7 2 12 12 N 1.47482 * 87.92944 * 139.67099 * 11 9 7 13 13 C 1.46895 * 111.00298 * 221.29245 * 12 11 9 14 14 C 1.50707 * 109.46919 * 170.00144 * 13 12 11 15 15 C 1.38264 * 119.94209 * 90.00678 * 14 13 12 16 16 C 1.38145 * 120.05437 * 180.02562 * 15 14 13 17 17 C 1.38734 * 119.94237 * 0.25588 * 16 15 14 18 18 O 1.35904 * 120.05067 * 179.74240 * 17 16 15 19 19 C 1.42903 * 116.99686 * 180.02562 * 18 17 16 20 20 C 1.52991 * 109.47089 * 180.02562 * 19 18 17 21 21 C 1.53001 * 117.49835 * 243.74561 * 20 19 18 22 22 C 1.52997 * 117.50026 * 175.08794 * 20 19 18 23 23 C 1.38734 * 119.88948 * 359.51611 * 17 16 15 24 24 C 1.38137 * 119.94186 * 0.45767 * 23 17 16 25 25 C 1.47473 * 87.83682 * 332.99205 * 12 11 9 26 26 H 0.96999 * 119.99324 * 359.97438 * 1 2 3 27 27 H 0.96696 * 114.00421 * 312.95008 * 10 9 7 28 28 H 1.08999 * 113.47539 * 24.91070 * 11 9 7 29 29 H 1.08998 * 113.53340 * 254.44718 * 11 9 7 30 30 H 1.09006 * 109.46957 * 50.00729 * 13 12 11 31 31 H 1.08989 * 109.47613 * 290.00603 * 13 12 11 32 32 H 1.07999 * 119.97245 * 0.04106 * 15 14 13 33 33 H 1.08002 * 120.02435 * 179.97438 * 16 15 14 34 34 H 1.09002 * 109.47195 * 300.00308 * 19 18 17 35 35 H 1.09000 * 109.46994 * 59.99845 * 19 18 17 36 36 H 1.09001 * 115.55289 * 29.41578 * 20 19 18 37 37 H 1.08995 * 117.50030 * 0.02562 * 21 20 19 38 38 H 1.09007 * 117.49881 * 145.02056 * 21 20 19 39 39 H 1.09005 * 117.49785 * 214.98193 * 22 20 19 40 40 H 1.09001 * 117.50143 * 359.97438 * 22 20 19 41 41 H 1.08000 * 120.02374 * 180.20633 * 23 17 16 42 42 H 1.08007 * 119.97511 * 179.76987 * 24 23 17 43 43 H 1.08999 * 113.47879 * 141.77296 * 25 12 11 44 44 H 1.09005 * 113.47904 * 272.23843 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.1939 -2.5403 -0.9612 11 6 2.1496 -3.7438 -0.0018 12 7 1.2082 -4.3587 0.9525 13 6 1.9272 -5.0872 2.0061 14 6 0.9591 -5.4902 3.0885 15 6 0.3070 -6.7070 3.0131 16 6 -0.5813 -7.0785 4.0038 17 6 -0.8227 -6.2271 5.0722 18 8 -1.7001 -6.5881 6.0452 19 6 -1.8998 -5.6617 7.1148 20 6 -2.9130 -6.2377 8.1059 21 6 -4.2352 -5.4879 8.2805 22 6 -3.1782 -5.4439 9.3867 23 6 -0.1636 -5.0087 5.1479 24 6 0.7241 -4.6422 4.1551 25 6 0.8565 -2.9972 1.3969 26 1 -0.4849 0.8401 0.0004 27 1 -0.3706 -1.7552 -0.9587 28 1 3.1393 -3.5652 0.4186 29 1 2.1864 -4.2531 -0.9648 30 1 2.6992 -4.4448 2.4299 31 1 2.3890 -5.9784 1.5814 32 1 0.4925 -7.3678 2.1792 33 1 -1.0907 -8.0290 3.9441 34 1 -0.9527 -5.4859 7.6249 35 1 -2.2770 -4.7206 6.7147 36 1 -2.9385 -7.3253 8.1735 37 1 -4.3834 -4.5846 7.6890 38 1 -5.1305 -6.0823 8.4633 39 1 -3.3784 -6.0094 10.2969 40 1 -2.6305 -4.5115 9.5235 41 1 -0.3474 -4.3457 5.9804 42 1 1.2348 -3.6921 4.2116 43 1 -0.2034 -2.8731 1.6188 44 1 1.5010 -2.6194 2.1906 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191529303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:08 Heat of formation + Delta-G solvation = 1.324056 kcal Electronic energy + Delta-G solvation = -24073.927540 eV Core-core repulsion = 20572.602854 eV Total energy + Delta-G solvation = -3501.324686 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.20727 -39.22862 -37.95586 -36.74387 -34.30964 -32.06125 -31.29037 -30.88892 -28.30975 -27.24779 -25.46588 -24.81457 -22.80203 -22.77272 -22.54687 -20.90536 -20.50778 -18.59955 -18.18211 -17.27162 -16.54362 -15.91749 -15.44856 -15.21500 -15.01456 -14.91902 -14.53854 -14.31102 -13.94788 -13.82451 -13.26673 -13.14144 -12.78165 -12.57858 -12.31873 -12.00427 -11.89618 -11.60575 -11.45001 -11.36452 -11.18660 -11.05518 -10.86566 -10.77934 -10.60581 -10.54546 -10.26754 -10.22950 -9.98186 -9.28753 -8.82395 -8.65826 -8.21658 -7.92387 -7.81464 -6.26734 -4.36687 1.52512 1.59009 2.97066 3.19956 3.25698 3.27933 3.47754 3.91183 4.24647 4.39109 4.50159 4.63866 4.85896 4.91660 4.94075 5.01858 5.02323 5.12594 5.21015 5.24542 5.27232 5.47969 5.52050 5.57261 5.66692 5.73386 5.83150 5.85327 5.95798 5.99501 6.08837 6.20945 6.32085 6.40450 6.41880 6.53815 6.71234 6.88010 6.91755 7.08168 7.19435 7.36414 7.47521 7.76709 7.95918 8.04834 8.65178 9.33286 9.70223 10.79114 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016076 B = 0.003052 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.314365 B = 9173.390063 C =10280.090392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.247 3.753 10 O -0.570 6.570 11 C 0.002 3.998 12 N -0.465 5.465 13 C 0.057 3.943 14 C -0.099 4.099 15 C -0.063 4.063 16 C -0.154 4.154 17 C 0.120 3.880 18 O -0.316 6.316 19 C 0.091 3.909 20 C -0.156 4.156 21 C -0.176 4.176 22 C -0.171 4.171 23 C -0.208 4.208 24 C -0.070 4.070 25 C -0.016 4.016 26 H 0.272 0.728 27 H 0.390 0.610 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.066 0.934 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.896 -10.460 15.313 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.205 3.795 10 O -0.382 6.382 11 C -0.127 4.127 12 N -0.187 5.187 13 C -0.071 4.071 14 C -0.099 4.099 15 C -0.082 4.082 16 C -0.172 4.172 17 C 0.075 3.925 18 O -0.230 6.230 19 C 0.016 3.984 20 C -0.174 4.174 21 C -0.213 4.213 22 C -0.208 4.208 23 C -0.226 4.226 24 C -0.088 4.088 25 C -0.145 4.145 26 H 0.082 0.918 27 H 0.245 0.755 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.134 0.866 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.085 0.915 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.422 -11.571 14.981 19.236 hybrid contribution 0.878 2.157 0.746 2.445 sum -2.543 -9.414 15.727 18.505 Atomic orbital electron populations 1.69295 1.06104 1.27902 1.50530 1.25066 0.94984 0.99661 0.93442 0.86459 0.79536 0.82048 0.78827 1.19921 1.21007 1.20090 1.21550 0.93612 0.90587 1.51557 0.91644 1.19355 0.85090 0.90551 0.84480 1.86028 1.45244 1.48093 1.58855 1.24094 0.95291 0.96560 0.96740 1.69056 1.26551 1.13879 1.09241 1.21582 0.93868 0.99560 0.92081 1.19723 0.99810 0.94664 0.95752 1.20824 0.94414 0.96024 0.96906 1.20351 1.02389 1.00403 0.94094 1.18924 0.90576 0.93736 0.89251 1.86003 1.59280 1.45158 1.32538 1.22256 0.98191 0.91706 0.86272 1.22102 0.97743 0.99788 0.97788 1.23124 0.93096 1.02721 1.02373 1.23002 1.03061 1.02115 0.92640 1.21137 1.02263 0.97110 1.02128 1.20901 0.96476 0.98619 0.92822 1.24629 1.00683 0.87631 1.01598 0.91783 0.75460 0.91839 0.91036 0.93836 0.90775 0.85364 0.85541 0.91708 0.91812 0.86641 0.88383 0.88409 0.88216 0.88466 0.85932 0.85917 0.91532 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.14 11.02 55.43 0.61 -23.53 16 2 C 0.07 1.85 5.39 -17.82 -0.10 1.76 16 3 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.53 -14.22 8.68 -34.44 -0.30 -14.52 16 8 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.25 6.30 1.57 -91.24 -0.14 6.16 16 10 O -0.57 -15.71 13.54 -35.23 -0.48 -16.19 16 11 C 0.00 0.04 7.12 -7.55 -0.05 -0.01 16 12 N -0.47 -9.81 6.40 -246.10 -1.58 -11.39 16 13 C 0.06 0.99 4.97 -4.98 -0.02 0.96 16 14 C -0.10 -1.61 5.18 -104.60 -0.54 -2.16 16 15 C -0.06 -0.94 9.69 -39.61 -0.38 -1.33 16 16 C -0.15 -2.19 9.99 -39.43 -0.39 -2.59 16 17 C 0.12 1.74 6.69 -39.22 -0.26 1.47 16 18 O -0.32 -4.21 10.14 -19.44 -0.20 -4.41 16 19 C 0.09 0.94 5.02 37.15 0.19 1.13 16 20 C -0.16 -1.35 6.05 -90.63 -0.55 -1.90 16 21 C -0.18 -1.35 10.18 -26.70 -0.27 -1.62 16 22 C -0.17 -1.17 10.25 -26.70 -0.27 -1.45 16 23 C -0.21 -2.98 9.04 -39.44 -0.36 -3.33 16 24 C -0.07 -1.09 9.11 -39.61 -0.36 -1.46 16 25 C -0.02 -0.37 6.24 -7.56 -0.05 -0.42 16 26 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.39 10.90 6.33 45.56 0.29 11.19 16 28 H 0.06 1.29 7.72 -51.93 -0.40 0.89 16 29 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.04 0.73 7.50 -51.93 -0.39 0.34 16 31 H 0.07 1.15 8.08 -51.94 -0.42 0.73 16 32 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 35 H 0.06 0.65 7.41 -51.93 -0.38 0.27 16 36 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 0.76 8.03 -51.93 -0.42 0.34 16 38 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.12 1.49 6.30 -52.49 -0.33 1.16 16 42 H 0.12 1.89 7.69 -52.48 -0.40 1.48 16 43 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 44 H 0.06 1.28 7.29 -51.93 -0.38 0.90 16 LS Contribution 362.26 15.07 5.46 5.46 Total: -1.00 -28.87 362.26 -11.23 -40.10 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -6.16 Total: 14.01 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -3.87 Total: -19.30 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: -0.97 Total: -34.92 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.67 Total: -20.59 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.87 -11.23 -40.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191529303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.424 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds