Wall clock time and date at job start Tue Mar 31 2020 08:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00033 * 2 1 4 4 H 1.48500 * 109.47252 * 240.00535 * 3 2 1 5 5 H 1.48499 * 109.47517 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47180 * 120.00549 * 3 2 1 7 7 C 1.37873 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00496 * 179.97438 * 7 2 1 9 9 C 1.50710 * 120.00035 * 359.97438 * 7 2 1 10 10 O 1.42898 * 113.25262 * 47.05335 * 9 7 2 11 11 C 1.53510 * 114.17012 * 179.97438 * 9 7 2 12 12 N 1.47482 * 87.92944 * 139.67099 * 11 9 7 13 13 C 1.46895 * 111.00298 * 221.29245 * 12 11 9 14 14 C 1.50707 * 109.46919 * 170.00144 * 13 12 11 15 15 C 1.38264 * 119.94209 * 90.00678 * 14 13 12 16 16 C 1.38145 * 120.05437 * 180.02562 * 15 14 13 17 17 C 1.38734 * 119.94237 * 0.25588 * 16 15 14 18 18 O 1.35904 * 120.05067 * 179.74240 * 17 16 15 19 19 C 1.42903 * 116.99686 * 180.02562 * 18 17 16 20 20 C 1.52991 * 109.47089 * 180.02562 * 19 18 17 21 21 C 1.53001 * 117.49835 * 243.74561 * 20 19 18 22 22 C 1.52997 * 117.50026 * 175.08794 * 20 19 18 23 23 C 1.38734 * 119.88948 * 359.51611 * 17 16 15 24 24 C 1.38137 * 119.94186 * 0.45767 * 23 17 16 25 25 C 1.47473 * 87.83682 * 332.99205 * 12 11 9 26 26 H 0.96999 * 119.99324 * 359.97438 * 1 2 3 27 27 H 0.96696 * 114.00421 * 312.95008 * 10 9 7 28 28 H 1.08999 * 113.47539 * 24.91070 * 11 9 7 29 29 H 1.08998 * 113.53340 * 254.44718 * 11 9 7 30 30 H 1.09006 * 109.46957 * 50.00729 * 13 12 11 31 31 H 1.08989 * 109.47613 * 290.00603 * 13 12 11 32 32 H 1.07999 * 119.97245 * 0.04106 * 15 14 13 33 33 H 1.08002 * 120.02435 * 179.97438 * 16 15 14 34 34 H 1.09002 * 109.47195 * 300.00308 * 19 18 17 35 35 H 1.09000 * 109.46994 * 59.99845 * 19 18 17 36 36 H 1.09001 * 115.55289 * 29.41578 * 20 19 18 37 37 H 1.08995 * 117.50030 * 0.02562 * 21 20 19 38 38 H 1.09007 * 117.49881 * 145.02056 * 21 20 19 39 39 H 1.09005 * 117.49785 * 214.98193 * 22 20 19 40 40 H 1.09001 * 117.50143 * 359.97438 * 22 20 19 41 41 H 1.08000 * 120.02374 * 180.20633 * 23 17 16 42 42 H 1.08007 * 119.97511 * 179.76987 * 24 23 17 43 43 H 1.08999 * 113.47879 * 141.77296 * 25 12 11 44 44 H 1.09005 * 113.47904 * 272.23843 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.1939 -2.5403 -0.9612 11 6 2.1496 -3.7438 -0.0018 12 7 1.2082 -4.3587 0.9525 13 6 1.9272 -5.0872 2.0061 14 6 0.9591 -5.4902 3.0885 15 6 0.3070 -6.7070 3.0131 16 6 -0.5813 -7.0785 4.0038 17 6 -0.8227 -6.2271 5.0722 18 8 -1.7001 -6.5881 6.0452 19 6 -1.8998 -5.6617 7.1148 20 6 -2.9130 -6.2377 8.1059 21 6 -4.2352 -5.4879 8.2805 22 6 -3.1782 -5.4439 9.3867 23 6 -0.1636 -5.0087 5.1479 24 6 0.7241 -4.6422 4.1551 25 6 0.8565 -2.9972 1.3969 26 1 -0.4849 0.8401 0.0004 27 1 -0.3706 -1.7552 -0.9587 28 1 3.1393 -3.5652 0.4186 29 1 2.1864 -4.2531 -0.9648 30 1 2.6992 -4.4448 2.4299 31 1 2.3890 -5.9784 1.5814 32 1 0.4925 -7.3678 2.1792 33 1 -1.0907 -8.0290 3.9441 34 1 -0.9527 -5.4859 7.6249 35 1 -2.2770 -4.7206 6.7147 36 1 -2.9385 -7.3253 8.1735 37 1 -4.3834 -4.5846 7.6890 38 1 -5.1305 -6.0823 8.4633 39 1 -3.3784 -6.0094 10.2969 40 1 -2.6305 -4.5115 9.5235 41 1 -0.3474 -4.3457 5.9804 42 1 1.2348 -3.6921 4.2116 43 1 -0.2034 -2.8731 1.6188 44 1 1.5010 -2.6194 2.1906 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191529303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:07 Heat of formation + Delta-G solvation = -17.307465 kcal Electronic energy + Delta-G solvation = -24074.735463 eV Core-core repulsion = 20572.602854 eV Total energy + Delta-G solvation = -3502.132609 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.40448 -40.76891 -38.94391 -37.63122 -36.19520 -34.09728 -32.64764 -32.03397 -29.62110 -28.51331 -27.13223 -26.58259 -24.13876 -23.86253 -23.30460 -21.99218 -21.45632 -20.47153 -19.28559 -19.17454 -17.45686 -17.12660 -16.88208 -16.77073 -16.59896 -16.06818 -15.86015 -15.61100 -15.44529 -14.96315 -14.53478 -14.37792 -14.05084 -13.96582 -13.82217 -13.61082 -13.33726 -12.95810 -12.77596 -12.57781 -12.45614 -12.38915 -12.28862 -12.19938 -12.02802 -11.82877 -11.69108 -11.41047 -11.15698 -10.93325 -10.63952 -10.09534 -9.95024 -9.67071 -9.05776 -8.24684 -6.42757 0.38480 0.41165 1.43120 1.44732 1.52938 2.08487 2.37151 2.72406 2.84004 2.96264 3.37900 3.68645 3.79163 3.83057 3.87682 3.91159 4.02974 4.07141 4.18919 4.21901 4.28468 4.36338 4.43059 4.44024 4.50966 4.54841 4.67395 4.70396 4.74620 4.77511 4.92729 4.97143 5.07640 5.15395 5.16238 5.20014 5.24894 5.34055 5.39526 5.49200 5.71970 5.75636 5.79990 5.97145 6.34240 6.42812 6.63201 7.30295 7.56216 8.80209 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016076 B = 0.003052 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.314365 B = 9173.390063 C =10280.090392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.025 3.975 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.556 4.556 8 H 0.068 0.932 9 C 0.216 3.784 10 O -0.584 6.584 11 C 0.012 3.988 12 N -0.470 5.470 13 C 0.060 3.940 14 C -0.119 4.119 15 C -0.066 4.066 16 C -0.159 4.159 17 C 0.117 3.883 18 O -0.324 6.324 19 C 0.085 3.915 20 C -0.171 4.171 21 C -0.181 4.181 22 C -0.156 4.156 23 C -0.211 4.211 24 C -0.082 4.082 25 C 0.001 3.999 26 H 0.274 0.726 27 H 0.383 0.617 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.141 0.859 42 H 0.120 0.880 43 H 0.040 0.960 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.385 -10.768 16.690 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.175 4.175 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.594 4.594 8 H 0.086 0.914 9 C 0.175 3.825 10 O -0.396 6.396 11 C -0.117 4.117 12 N -0.192 5.192 13 C -0.068 4.068 14 C -0.120 4.120 15 C -0.084 4.084 16 C -0.178 4.178 17 C 0.071 3.929 18 O -0.238 6.238 19 C 0.011 3.989 20 C -0.189 4.189 21 C -0.218 4.218 22 C -0.193 4.193 23 C -0.229 4.229 24 C -0.101 4.101 25 C -0.129 4.129 26 H 0.084 0.916 27 H 0.238 0.762 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.159 0.841 42 H 0.138 0.862 43 H 0.058 0.942 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.904 -11.899 16.370 20.444 hybrid contribution 0.656 2.191 0.377 2.318 sum -2.247 -9.708 16.747 19.487 Atomic orbital electron populations 1.69383 1.07310 1.28696 1.50800 1.25851 0.95789 1.02876 0.92952 0.85438 0.78277 0.77936 0.78954 1.19635 1.20672 1.19313 1.21827 0.93900 0.91571 1.52136 0.91409 1.19770 0.85477 0.91947 0.85278 1.86008 1.45862 1.47795 1.59951 1.24003 0.95549 0.94819 0.97282 1.68956 1.27264 1.12703 1.10302 1.21612 0.93937 0.99801 0.91412 1.19745 1.00709 0.95631 0.95910 1.21016 0.94140 0.95770 0.97499 1.20612 1.02190 1.01155 0.93819 1.19101 0.90468 0.93704 0.89580 1.86006 1.58797 1.46116 1.32898 1.22473 0.99266 0.91369 0.85835 1.22095 0.98119 0.99893 0.98762 1.23207 0.93235 1.02519 1.02850 1.23112 1.01806 1.02000 0.92392 1.21320 1.01754 0.97513 1.02355 1.20994 0.97093 0.98619 0.93378 1.24320 0.98971 0.89135 1.00436 0.91624 0.76247 0.90143 0.90956 0.93435 0.88694 0.83900 0.83757 0.90741 0.91938 0.86795 0.88775 0.87536 0.86709 0.87839 0.84149 0.86213 0.94181 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.11 11.02 21.45 0.24 -49.87 16 2 C 0.02 1.30 5.39 84.65 0.46 1.76 16 3 Si 0.97 41.31 29.54 68.60 2.03 43.33 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.56 -29.63 8.68 25.60 0.22 -29.41 16 8 H 0.07 3.48 7.81 -2.91 -0.02 3.45 16 9 C 0.22 11.14 1.57 -11.20 -0.02 11.12 16 10 O -0.58 -32.92 13.54 -148.98 -2.02 -34.93 16 11 C 0.01 0.52 7.12 83.57 0.60 1.12 16 12 N -0.47 -19.59 6.40 -932.92 -5.97 -25.56 16 13 C 0.06 1.99 4.97 85.56 0.43 2.42 16 14 C -0.12 -3.79 5.18 -19.85 -0.10 -3.90 16 15 C -0.07 -1.88 9.69 22.25 0.22 -1.66 16 16 C -0.16 -4.33 9.99 22.37 0.22 -4.11 16 17 C 0.12 3.26 6.69 22.51 0.15 3.41 16 18 O -0.32 -8.28 10.14 -92.47 -0.94 -9.22 16 19 C 0.09 1.66 5.02 71.98 0.36 2.03 16 20 C -0.17 -2.72 6.05 -10.80 -0.07 -2.79 16 21 C -0.18 -2.52 10.18 30.62 0.31 -2.21 16 22 C -0.16 -1.82 10.25 30.62 0.31 -1.50 16 23 C -0.21 -5.87 9.04 22.36 0.20 -5.67 16 24 C -0.08 -2.55 9.11 22.25 0.20 -2.35 16 25 C 0.00 0.05 6.24 83.57 0.52 0.57 16 26 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 27 H 0.38 22.10 6.33 -74.06 -0.47 21.63 16 28 H 0.08 3.16 7.72 -2.39 -0.02 3.15 16 29 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 30 H 0.05 1.54 7.50 -2.38 -0.02 1.52 16 31 H 0.09 2.74 8.08 -2.39 -0.02 2.72 16 32 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 34 H 0.07 1.29 7.65 -2.39 -0.02 1.27 16 35 H 0.06 1.22 7.41 -2.39 -0.02 1.21 16 36 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 1.37 8.03 -2.39 -0.02 1.35 16 38 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.14 3.26 6.30 -2.91 -0.02 3.25 16 42 H 0.12 3.69 7.69 -2.91 -0.02 3.66 16 43 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.06 2.72 7.29 -2.38 -0.02 2.70 16 Total: -1.00 -61.06 362.26 -2.12 -63.19 By element: Atomic # 1 Polarization: 43.71 SS G_CDS: 0.53 Total: 44.24 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 4.02 Total: -31.17 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -5.74 Total: -75.43 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -2.95 Total: -44.15 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Total: -61.06 -2.12 -63.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191529303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.878 kcal (2) G-P(sol) polarization free energy of solvation -61.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds