Wall clock time and date at job start Tue Mar 31 2020 08:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99969 * 2 1 4 4 H 1.48492 * 109.47286 * 270.00392 * 3 2 1 5 5 H 1.48507 * 109.46971 * 30.00635 * 3 2 1 6 6 H 1.48501 * 109.47006 * 149.99821 * 3 2 1 7 7 C 1.38694 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00278 * 179.97438 * 7 2 1 9 9 O 1.34812 * 120.00033 * 0.02562 * 7 2 1 10 10 C 1.35522 * 117.00327 * 174.37967 * 9 7 2 11 11 C 1.38840 * 120.15657 * 353.71126 * 10 9 7 12 12 C 1.38022 * 120.06624 * 179.97438 * 11 10 9 13 13 C 1.38571 * 120.40671 * 0.02562 * 12 11 10 14 14 C 1.37836 * 120.32250 * 0.02562 * 13 12 11 15 15 C 1.39666 * 119.91812 * 359.97438 * 14 13 12 16 16 C 1.47528 * 120.19713 * 180.02562 * 15 14 13 17 17 O 1.21596 * 119.99873 * 231.37147 * 16 15 14 18 18 N 1.34773 * 120.00197 * 51.37213 * 16 15 14 19 19 C 1.46966 * 120.36253 * 5.51838 * 18 16 15 20 20 C 1.52838 * 108.83903 * 68.62358 * 19 18 16 21 21 C 1.53802 * 109.25276 * 72.59696 * 20 19 18 22 22 C 1.52447 * 109.40509 * 282.12652 * 21 20 19 23 23 C 1.53947 * 110.72959 * 113.73010 * 22 21 20 24 24 C 1.52882 * 109.73219 * 315.63617 * 23 22 21 25 25 C 1.45335 * 120.36914 * 185.79549 * 18 16 15 26 26 H 0.97001 * 120.00242 * 359.97438 * 1 2 3 27 27 H 1.07991 * 119.96508 * 359.97438 * 11 10 9 28 28 H 1.08000 * 119.79427 * 179.74340 * 12 11 10 29 29 H 1.07996 * 119.84493 * 180.02562 * 13 12 11 30 30 H 1.07993 * 120.04044 * 180.02562 * 14 13 12 31 31 H 1.09003 * 109.53369 * 188.26716 * 19 18 16 32 32 H 1.08996 * 109.53354 * 308.49396 * 19 18 16 33 33 H 1.09004 * 109.50409 * 312.64591 * 20 19 18 34 34 H 1.08999 * 109.44646 * 192.51502 * 20 19 18 35 35 H 1.08997 * 109.47782 * 162.15254 * 21 20 19 36 36 H 1.08994 * 109.48216 * 42.11055 * 21 20 19 37 37 H 1.09002 * 109.22346 * 353.41185 * 22 21 20 38 38 H 1.08991 * 109.19006 * 234.02974 * 22 21 20 39 39 H 1.09001 * 109.43004 * 195.55598 * 23 22 21 40 40 H 1.08996 * 109.42825 * 75.71467 * 23 22 21 41 41 H 1.09000 * 109.48420 * 167.13130 * 24 23 22 42 42 H 1.09002 * 109.48413 * 47.07409 * 24 23 22 43 43 H 1.09000 * 109.67544 * 343.05394 * 25 18 16 44 44 H 1.09001 * 109.67602 * 103.59329 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0087 -1.2011 -0.0005 8 1 3.0887 -1.2011 -0.0010 9 8 1.3347 -2.3686 -0.0016 10 6 2.0678 -3.5023 -0.1203 11 6 3.4325 -3.4280 -0.3645 12 6 4.1774 -4.5837 -0.4846 13 6 3.5718 -5.8242 -0.3634 14 6 2.2180 -5.9170 -0.1220 15 6 1.4512 -4.7563 0.0019 16 6 0.0018 -4.8485 0.2608 17 8 -0.7813 -4.2392 -0.4421 18 7 -0.4544 -5.6080 1.2764 19 6 0.4868 -6.2504 2.2045 20 6 1.1661 -5.1698 3.0452 21 6 0.1578 -4.6107 4.0631 22 6 -0.7847 -3.6394 3.3614 23 6 -2.2213 -4.1925 3.3415 24 6 -2.1994 -5.6722 2.9576 25 6 -1.8822 -5.8058 1.4622 26 1 -0.4850 0.8400 0.0004 27 1 3.9116 -2.4649 -0.4606 28 1 5.2379 -4.5208 -0.6787 29 1 4.1635 -6.7226 -0.4586 30 1 1.7508 -6.8861 -0.0280 31 1 -0.0554 -6.9327 2.8593 32 1 1.2356 -6.8047 1.6387 33 1 1.5109 -4.3659 2.3948 34 1 2.0158 -5.6018 3.5737 35 1 0.6933 -4.0886 4.8560 36 1 -0.4183 -5.4305 4.4920 37 1 -0.4449 -3.4864 2.3371 38 1 -0.7746 -2.6859 3.8891 39 1 -2.8134 -3.6379 2.6136 40 1 -2.6664 -4.0811 4.3302 41 1 -3.1736 -6.1157 3.1637 42 1 -1.4347 -6.1874 3.5390 43 1 -2.4333 -5.0510 0.9013 44 1 -2.1633 -6.8000 1.1148 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194054751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:03 Heat of formation + Delta-G solvation = -30.180798 kcal Electronic energy + Delta-G solvation = -26627.770146 eV Core-core repulsion = 23125.079308 eV Total energy + Delta-G solvation = -3502.690839 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.27478 -38.69540 -36.92423 -36.36058 -33.74241 -33.01837 -32.34062 -30.40547 -28.98658 -27.98133 -26.17190 -25.36906 -23.76422 -21.97251 -21.88894 -21.42502 -19.57043 -18.65789 -18.04338 -16.98742 -16.47351 -15.99410 -15.50711 -14.75396 -14.66230 -14.44542 -14.10965 -13.84665 -13.62104 -13.50233 -13.37223 -13.28712 -12.63854 -12.55527 -12.37409 -11.88581 -11.73665 -11.62320 -11.31022 -11.29633 -11.10115 -10.90771 -10.85469 -10.73828 -10.60119 -10.44583 -10.26209 -10.08959 -9.93567 -9.60887 -8.95562 -8.87687 -8.25942 -7.95859 -7.30492 -6.45775 -4.06160 1.83832 2.30899 3.11099 3.12182 3.16615 3.44336 3.65743 3.92936 4.52282 4.86705 5.05476 5.06233 5.13665 5.17744 5.24921 5.27126 5.35920 5.47220 5.53119 5.63684 5.71545 5.74531 5.86161 5.92824 5.98006 5.98763 6.07815 6.14625 6.17659 6.20693 6.32065 6.40555 6.57103 6.59173 6.60426 6.66256 6.70801 6.95547 6.99240 7.05427 7.13353 7.26731 7.30154 7.69292 7.90810 8.00333 8.95267 8.98785 9.65072 10.69304 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012682 B = 0.006689 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.372064 B = 4184.842728 C = 5397.352794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.045 3.955 3 Si 0.939 3.061 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.400 4.400 8 H 0.093 0.907 9 O -0.147 6.147 10 C 0.186 3.814 11 C -0.235 4.235 12 C -0.057 4.057 13 C -0.223 4.223 14 C -0.044 4.044 15 C -0.211 4.211 16 C 0.577 3.423 17 O -0.519 6.519 18 N -0.612 5.612 19 C 0.110 3.890 20 C -0.143 4.143 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.113 4.113 24 C -0.144 4.144 25 C 0.113 3.887 26 H 0.271 0.729 27 H 0.131 0.869 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.699 -11.729 7.275 13.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.162 4.162 3 Si 0.763 3.237 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.476 4.476 8 H 0.110 0.890 9 O -0.048 6.048 10 C 0.129 3.871 11 C -0.254 4.254 12 C -0.075 4.075 13 C -0.242 4.242 14 C -0.063 4.063 15 C -0.215 4.215 16 C 0.367 3.633 17 O -0.394 6.394 18 N -0.348 5.348 19 C -0.013 4.013 20 C -0.181 4.181 21 C -0.154 4.154 22 C -0.162 4.162 23 C -0.150 4.150 24 C -0.181 4.181 25 C -0.010 4.010 26 H 0.081 0.919 27 H 0.148 0.852 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.784 -11.129 6.909 13.122 hybrid contribution 0.621 0.859 0.009 1.060 sum 1.405 -10.270 6.918 12.462 Atomic orbital electron populations 1.70081 1.05927 1.27730 1.43657 1.25328 0.95791 0.98837 0.96250 0.85754 0.78994 0.80131 0.78820 1.19760 1.20187 1.19106 1.21380 0.91768 0.80844 1.53586 0.88976 1.84044 1.33922 1.11255 1.75533 1.19194 0.90010 0.87041 0.90899 1.21135 0.93951 0.99251 1.11097 1.20866 0.98519 0.92290 0.95832 1.20459 0.94552 0.96894 1.12293 1.20700 0.93476 0.95601 0.96496 1.18718 0.92978 0.91910 1.17905 1.18107 0.88314 0.77338 0.79532 1.90794 1.57744 1.42840 1.47984 1.47652 1.06002 1.51536 1.29610 1.21772 0.92430 0.95087 0.91975 1.22273 0.97692 0.99856 0.98269 1.21730 0.97143 0.98927 0.97575 1.21719 0.94177 0.97631 1.02680 1.21678 0.97526 0.95286 1.00543 1.22289 1.01637 0.97759 0.96432 1.21355 0.82338 1.01080 0.96202 0.91899 0.85168 0.87269 0.87285 0.86693 0.90449 0.90688 0.90077 0.91644 0.92726 0.91828 0.90233 0.92892 0.91872 0.92894 0.91686 0.90305 0.89242 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.04 13.67 55.48 0.76 -24.29 16 2 C 0.04 1.23 5.49 -17.52 -0.10 1.14 16 3 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.40 -11.15 9.44 30.90 0.29 -10.86 16 8 H 0.09 2.35 5.31 -52.49 -0.28 2.07 16 9 O -0.15 -4.24 8.88 -5.65 -0.05 -4.29 16 10 C 0.19 4.52 6.31 -38.60 -0.24 4.27 16 11 C -0.24 -4.99 9.12 -39.44 -0.36 -5.35 16 12 C -0.06 -0.99 10.03 -39.54 -0.40 -1.38 16 13 C -0.22 -3.62 10.03 -39.61 -0.40 -4.02 16 14 C -0.04 -0.76 7.94 -39.20 -0.31 -1.08 16 15 C -0.21 -4.50 3.63 -104.81 -0.38 -4.88 16 16 C 0.58 12.68 5.34 -12.47 -0.07 12.62 16 17 O -0.52 -13.91 16.07 -1.17 -0.02 -13.92 16 18 N -0.61 -10.38 1.67 -175.28 -0.29 -10.67 16 19 C 0.11 1.49 4.96 -3.87 -0.02 1.47 16 20 C -0.14 -2.11 5.47 -26.40 -0.14 -2.25 16 21 C -0.12 -1.65 5.49 -26.60 -0.15 -1.79 16 22 C -0.12 -2.15 5.40 -26.52 -0.14 -2.30 16 23 C -0.11 -1.66 5.75 -26.30 -0.15 -1.82 16 24 C -0.14 -1.79 5.45 -26.56 -0.14 -1.94 16 25 C 0.11 1.71 6.04 -4.43 -0.03 1.68 16 26 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.13 2.75 5.73 -52.49 -0.30 2.45 16 28 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 30 H 0.12 1.67 6.73 -52.49 -0.35 1.31 16 31 H 0.08 0.84 6.07 -51.93 -0.32 0.52 16 32 H 0.08 0.96 4.91 -51.93 -0.26 0.70 16 33 H 0.08 1.54 5.57 -51.93 -0.29 1.25 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.76 5.48 -51.93 -0.28 0.48 16 37 H 0.08 1.75 5.38 -51.93 -0.28 1.47 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.04 7.87 -51.93 -0.41 0.64 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.90 3.35 -51.93 -0.17 0.73 16 43 H 0.09 1.61 6.75 -51.93 -0.35 1.26 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -32.98 333.48 -8.14 -41.13 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.81 Total: 8.02 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.74 Total: -16.49 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.47 Total: -34.95 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.07 Total: -18.22 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.98 -8.14 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194054751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.945 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds