Wall clock time and date at job start Tue Mar 31 2020 08:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99969 * 2 1 4 4 H 1.48492 * 109.47286 * 270.00392 * 3 2 1 5 5 H 1.48507 * 109.46971 * 30.00635 * 3 2 1 6 6 H 1.48501 * 109.47006 * 149.99821 * 3 2 1 7 7 C 1.38694 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00278 * 179.97438 * 7 2 1 9 9 O 1.34812 * 120.00033 * 0.02562 * 7 2 1 10 10 C 1.35522 * 117.00327 * 174.37967 * 9 7 2 11 11 C 1.38840 * 120.15657 * 353.71126 * 10 9 7 12 12 C 1.38022 * 120.06624 * 179.97438 * 11 10 9 13 13 C 1.38571 * 120.40671 * 0.02562 * 12 11 10 14 14 C 1.37836 * 120.32250 * 0.02562 * 13 12 11 15 15 C 1.39666 * 119.91812 * 359.97438 * 14 13 12 16 16 C 1.47528 * 120.19713 * 180.02562 * 15 14 13 17 17 O 1.21596 * 119.99873 * 231.37147 * 16 15 14 18 18 N 1.34773 * 120.00197 * 51.37213 * 16 15 14 19 19 C 1.46966 * 120.36253 * 5.51838 * 18 16 15 20 20 C 1.52838 * 108.83903 * 68.62358 * 19 18 16 21 21 C 1.53802 * 109.25276 * 72.59696 * 20 19 18 22 22 C 1.52447 * 109.40509 * 282.12652 * 21 20 19 23 23 C 1.53947 * 110.72959 * 113.73010 * 22 21 20 24 24 C 1.52882 * 109.73219 * 315.63617 * 23 22 21 25 25 C 1.45335 * 120.36914 * 185.79549 * 18 16 15 26 26 H 0.97001 * 120.00242 * 359.97438 * 1 2 3 27 27 H 1.07991 * 119.96508 * 359.97438 * 11 10 9 28 28 H 1.08000 * 119.79427 * 179.74340 * 12 11 10 29 29 H 1.07996 * 119.84493 * 180.02562 * 13 12 11 30 30 H 1.07993 * 120.04044 * 180.02562 * 14 13 12 31 31 H 1.09003 * 109.53369 * 188.26716 * 19 18 16 32 32 H 1.08996 * 109.53354 * 308.49396 * 19 18 16 33 33 H 1.09004 * 109.50409 * 312.64591 * 20 19 18 34 34 H 1.08999 * 109.44646 * 192.51502 * 20 19 18 35 35 H 1.08997 * 109.47782 * 162.15254 * 21 20 19 36 36 H 1.08994 * 109.48216 * 42.11055 * 21 20 19 37 37 H 1.09002 * 109.22346 * 353.41185 * 22 21 20 38 38 H 1.08991 * 109.19006 * 234.02974 * 22 21 20 39 39 H 1.09001 * 109.43004 * 195.55598 * 23 22 21 40 40 H 1.08996 * 109.42825 * 75.71467 * 23 22 21 41 41 H 1.09000 * 109.48420 * 167.13130 * 24 23 22 42 42 H 1.09002 * 109.48413 * 47.07409 * 24 23 22 43 43 H 1.09000 * 109.67544 * 343.05394 * 25 18 16 44 44 H 1.09001 * 109.67602 * 103.59329 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0087 -1.2011 -0.0005 8 1 3.0887 -1.2011 -0.0010 9 8 1.3347 -2.3686 -0.0016 10 6 2.0678 -3.5023 -0.1203 11 6 3.4325 -3.4280 -0.3645 12 6 4.1774 -4.5837 -0.4846 13 6 3.5718 -5.8242 -0.3634 14 6 2.2180 -5.9170 -0.1220 15 6 1.4512 -4.7563 0.0019 16 6 0.0018 -4.8485 0.2608 17 8 -0.7813 -4.2392 -0.4421 18 7 -0.4544 -5.6080 1.2764 19 6 0.4868 -6.2504 2.2045 20 6 1.1661 -5.1698 3.0452 21 6 0.1578 -4.6107 4.0631 22 6 -0.7847 -3.6394 3.3614 23 6 -2.2213 -4.1925 3.3415 24 6 -2.1994 -5.6722 2.9576 25 6 -1.8822 -5.8058 1.4622 26 1 -0.4850 0.8400 0.0004 27 1 3.9116 -2.4649 -0.4606 28 1 5.2379 -4.5208 -0.6787 29 1 4.1635 -6.7226 -0.4586 30 1 1.7508 -6.8861 -0.0280 31 1 -0.0554 -6.9327 2.8593 32 1 1.2356 -6.8047 1.6387 33 1 1.5109 -4.3659 2.3948 34 1 2.0158 -5.6018 3.5737 35 1 0.6933 -4.0886 4.8560 36 1 -0.4183 -5.4305 4.4920 37 1 -0.4449 -3.4864 2.3371 38 1 -0.7746 -2.6859 3.8891 39 1 -2.8134 -3.6379 2.6136 40 1 -2.6664 -4.0811 4.3302 41 1 -3.1736 -6.1157 3.1637 42 1 -1.4347 -6.1874 3.5390 43 1 -2.4333 -5.0510 0.9013 44 1 -2.1633 -6.8000 1.1148 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194054751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:02 Heat of formation + Delta-G solvation = -51.241869 kcal Electronic energy + Delta-G solvation = -26628.683423 eV Core-core repulsion = 23125.079308 eV Total energy + Delta-G solvation = -3503.604115 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.78235 -40.31712 -38.50371 -38.04478 -35.16567 -34.35331 -34.21126 -31.93976 -30.61789 -29.31840 -27.54802 -27.20639 -25.23259 -23.43431 -23.19830 -22.92346 -20.98724 -20.07744 -19.86212 -18.67215 -17.92726 -17.50882 -16.86268 -16.44019 -16.29766 -15.90825 -15.64568 -15.46800 -15.14879 -14.95843 -14.79268 -14.65854 -14.24422 -14.04612 -13.87158 -13.57150 -13.13161 -13.02379 -12.85795 -12.68773 -12.56245 -12.46266 -12.33441 -12.15441 -11.94808 -11.81957 -11.51583 -11.46182 -11.42402 -11.13425 -10.84941 -10.65228 -9.80332 -9.34984 -9.00992 -8.47889 -6.18066 0.27804 0.73124 1.28640 1.39893 1.47187 1.84170 2.12803 2.25512 2.82877 3.16746 3.43842 3.62358 3.86540 3.92895 3.98815 4.08851 4.13909 4.14369 4.24917 4.29160 4.51494 4.53666 4.58804 4.61345 4.69789 4.74295 4.82749 4.86386 4.95374 5.00056 5.00973 5.07065 5.14122 5.16186 5.21497 5.27436 5.36902 5.44515 5.52886 5.60038 5.61610 5.71660 5.86162 5.95530 6.18320 6.50768 6.93382 7.38327 7.77689 8.73620 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012682 B = 0.006689 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.372064 B = 4184.842728 C = 5397.352794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.419 4.419 8 H 0.104 0.896 9 O -0.210 6.210 10 C 0.146 3.854 11 C -0.253 4.253 12 C -0.049 4.049 13 C -0.189 4.189 14 C -0.040 4.040 15 C -0.218 4.218 16 C 0.569 3.431 17 O -0.590 6.590 18 N -0.599 5.599 19 C 0.104 3.896 20 C -0.142 4.142 21 C -0.108 4.108 22 C -0.125 4.125 23 C -0.112 4.112 24 C -0.129 4.129 25 C 0.104 3.896 26 H 0.270 0.730 27 H 0.120 0.880 28 H 0.152 0.848 29 H 0.164 0.836 30 H 0.155 0.845 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.029 0.971 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.022 0.978 38 H 0.029 0.971 39 H 0.027 0.973 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.044 0.956 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.367 -16.439 9.202 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.221 4.221 3 Si 0.836 3.164 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.495 4.495 8 H 0.121 0.879 9 O -0.114 6.114 10 C 0.093 3.907 11 C -0.272 4.272 12 C -0.067 4.067 13 C -0.207 4.207 14 C -0.058 4.058 15 C -0.223 4.223 16 C 0.359 3.641 17 O -0.471 6.471 18 N -0.332 5.332 19 C -0.016 4.016 20 C -0.180 4.180 21 C -0.145 4.145 22 C -0.163 4.163 23 C -0.150 4.150 24 C -0.166 4.166 25 C -0.018 4.018 26 H 0.078 0.922 27 H 0.137 0.863 28 H 0.169 0.831 29 H 0.181 0.819 30 H 0.173 0.827 31 H 0.141 0.859 32 H 0.111 0.889 33 H 0.048 0.952 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.040 0.960 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.063 0.937 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.510 -15.939 8.879 18.580 hybrid contribution -0.073 1.942 -0.578 2.027 sum 3.437 -13.997 8.301 16.632 Atomic orbital electron populations 1.70280 1.08291 1.28485 1.47820 1.26672 0.96705 1.02960 0.95733 0.84616 0.77977 0.74465 0.79302 1.18796 1.19757 1.17055 1.21887 0.92461 0.81586 1.53527 0.87856 1.84036 1.35592 1.12449 1.79365 1.19898 0.91561 0.87108 0.92162 1.21275 0.93090 1.00746 1.12085 1.21357 1.00322 0.91280 0.93771 1.21131 0.94171 0.98190 1.07258 1.21186 0.94049 0.95520 0.95057 1.19089 0.93215 0.92441 1.17532 1.18426 0.88385 0.77190 0.80087 1.90750 1.59305 1.45939 1.51103 1.47705 1.07526 1.49750 1.28243 1.22152 0.92649 0.94929 0.91912 1.22243 0.98996 0.98829 0.97960 1.21715 0.96592 0.99081 0.97144 1.21694 0.97003 0.98294 0.99330 1.21684 0.95173 0.96924 1.01180 1.22260 1.04389 0.95786 0.94162 1.21583 0.80863 1.01385 0.97997 0.92155 0.86268 0.83075 0.81859 0.82733 0.85906 0.88944 0.95246 0.88467 0.92284 0.88018 0.95950 0.95253 0.95420 0.89987 0.88144 0.87747 0.93704 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -60.18 13.67 21.62 0.30 -59.88 16 2 C -0.02 -1.34 5.49 84.85 0.47 -0.87 16 3 Si 1.02 44.98 29.55 68.60 2.03 47.00 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.42 -25.52 9.44 67.93 0.64 -24.88 16 8 H 0.10 5.69 5.31 -2.91 -0.02 5.68 16 9 O -0.21 -13.40 8.88 -13.89 -0.12 -13.53 16 10 C 0.15 7.54 6.31 22.91 0.14 7.69 16 11 C -0.25 -10.93 9.12 22.36 0.20 -10.73 16 12 C -0.05 -1.55 10.03 22.30 0.22 -1.33 16 13 C -0.19 -5.09 10.03 22.25 0.22 -4.87 16 14 C -0.04 -1.25 7.94 22.52 0.18 -1.07 16 15 C -0.22 -9.56 3.63 -19.99 -0.07 -9.63 16 16 C 0.57 26.44 5.34 86.69 0.46 26.91 16 17 O -0.59 -34.99 16.07 2.15 0.03 -34.96 16 18 N -0.60 -20.11 1.67 -826.73 -1.38 -21.50 16 19 C 0.10 2.43 4.96 86.24 0.43 2.86 16 20 C -0.14 -3.93 5.47 30.81 0.17 -3.76 16 21 C -0.11 -2.89 5.49 30.68 0.17 -2.72 16 22 C -0.13 -4.62 5.40 30.73 0.17 -4.46 16 23 C -0.11 -3.36 5.75 30.87 0.18 -3.18 16 24 C -0.13 -2.85 5.45 30.71 0.17 -2.69 16 25 C 0.10 3.09 6.04 86.75 0.52 3.61 16 26 H 0.27 16.37 8.31 -92.71 -0.77 15.60 16 27 H 0.12 5.29 5.73 -2.92 -0.02 5.27 16 28 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 29 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 30 H 0.16 3.60 6.73 -2.91 -0.02 3.58 16 31 H 0.12 1.83 6.07 -2.39 -0.01 1.81 16 32 H 0.09 1.86 4.91 -2.39 -0.01 1.84 16 33 H 0.03 1.14 5.57 -2.38 -0.01 1.13 16 34 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 1.93 5.48 -2.39 -0.01 1.92 16 37 H 0.02 1.07 5.38 -2.39 -0.01 1.06 16 38 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.03 1.00 7.87 -2.39 -0.02 0.98 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.10 1.79 3.35 -2.39 -0.01 1.78 16 43 H 0.04 1.75 6.75 -2.39 -0.02 1.73 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -89.69 333.48 6.15 -83.54 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 1.03 Total: 28.44 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 4.27 Total: -29.12 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -1.09 Total: -81.38 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -0.09 Total: -48.49 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -89.69 6.15 -83.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194054751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.295 kcal (2) G-P(sol) polarization free energy of solvation -89.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds