Wall clock time and date at job start Tue Mar 31 2020 08:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00097 * 2 1 4 4 H 1.48491 * 109.47026 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46805 * 299.99970 * 3 2 1 6 6 H 1.48501 * 109.47244 * 59.99718 * 3 2 1 7 7 C 1.37875 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00229 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99908 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99619 * 90.00204 * 10 9 7 12 12 C 1.50703 * 109.47064 * 90.00051 * 11 10 9 13 13 C 1.34515 * 125.79060 * 89.99944 * 12 11 10 14 14 C 1.41380 * 106.83832 * 179.97438 * 13 12 11 15 15 C 1.34506 * 106.84493 * 359.97438 * 14 13 12 16 16 O 1.34306 * 125.78568 * 269.69282 * 12 11 10 17 17 C 1.34774 * 120.00119 * 270.00028 * 10 9 7 18 18 O 1.21270 * 120.00172 * 0.02562 * 17 10 9 19 19 C 1.50706 * 119.99638 * 180.02562 * 17 10 9 20 20 C 1.50702 * 109.46665 * 180.02562 * 19 17 10 21 21 C 1.29440 * 117.95783 * 94.73673 * 20 19 17 22 22 C 1.50071 * 124.07404 * 180.23204 * 21 20 19 23 23 C 1.53025 * 110.20225 * 343.32214 * 22 21 20 24 24 C 1.53390 * 108.43894 * 49.23972 * 23 22 21 25 25 C 1.50062 * 117.96022 * 274.99615 * 20 19 17 26 26 H 0.97004 * 120.00297 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46741 * 59.99693 * 9 7 2 28 28 H 1.09003 * 109.46917 * 300.00358 * 9 7 2 29 29 H 1.09002 * 109.47068 * 210.00020 * 11 10 9 30 30 H 1.09001 * 109.47372 * 330.00108 * 11 10 9 31 31 H 1.07996 * 126.58016 * 0.03378 * 13 12 11 32 32 H 1.08006 * 126.57610 * 179.97438 * 14 13 12 33 33 H 1.08005 * 125.79499 * 180.02562 * 15 14 13 34 34 H 1.09004 * 109.46731 * 300.00166 * 19 17 10 35 35 H 1.08993 * 109.47109 * 60.00140 * 19 17 10 36 36 H 1.07996 * 117.97011 * 0.46247 * 21 20 19 37 37 H 1.08999 * 109.48758 * 223.00223 * 22 21 20 38 38 H 1.09002 * 109.17766 * 103.44675 * 22 21 20 39 39 H 1.09000 * 109.63865 * 289.56049 * 23 22 21 40 40 H 1.08991 * 109.81818 * 169.03378 * 23 22 21 41 41 H 1.08997 * 109.64373 * 172.88154 * 24 23 22 42 42 H 1.09008 * 109.63860 * 52.25374 * 24 23 22 43 43 H 1.09000 * 109.36109 * 283.05428 * 25 20 19 44 44 H 1.09000 * 109.36069 * 42.78642 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 2.6799 -4.1688 1.2702 12 6 1.7635 -5.2829 1.7064 13 6 1.8988 -6.5829 1.3884 14 6 0.8278 -7.2690 2.0055 15 6 0.1024 -6.3475 2.6642 16 8 0.6764 -5.1468 2.4833 17 6 2.6400 -4.1254 -1.1658 18 8 2.2456 -3.6647 -2.2160 19 6 3.6189 -5.2712 -1.1659 20 6 3.9449 -5.6532 -2.5868 21 6 5.0003 -5.1346 -3.1278 22 6 5.4495 -5.4149 -4.5320 23 6 4.7574 -6.6702 -5.0676 24 6 3.2521 -6.5458 -4.8001 25 6 3.0224 -6.6065 -3.2884 26 1 -0.4851 0.8401 -0.0004 27 1 0.6240 -2.5574 -0.8880 28 1 0.6247 -2.5563 0.8920 29 1 3.6893 -4.5589 1.1393 30 1 2.6882 -3.3868 2.0295 31 1 2.6769 -7.0189 0.7794 32 1 0.6300 -8.3297 1.9574 33 1 -0.7884 -6.5407 3.2435 34 1 4.5319 -4.9692 -0.6527 35 1 3.1785 -6.1253 -0.6516 36 1 5.5967 -4.4610 -2.5304 37 1 6.5291 -5.5640 -4.5455 38 1 5.1963 -4.5646 -5.1654 39 1 5.1486 -7.5502 -4.5572 40 1 4.9329 -6.7600 -6.1395 41 1 2.7248 -7.3678 -5.2841 42 1 2.8884 -5.5942 -5.1881 43 1 3.2125 -7.6197 -2.9345 44 1 1.9892 -6.3356 -3.0709 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264488058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:03 Heat of formation + Delta-G solvation = -17.900198 kcal Electronic energy + Delta-G solvation = -25132.610330 eV Core-core repulsion = 21630.452018 eV Total energy + Delta-G solvation = -3502.158312 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.33553 -39.46423 -37.94651 -35.15006 -33.18180 -32.59046 -32.40402 -30.60763 -30.15724 -28.15434 -26.58928 -25.30161 -23.22994 -22.75587 -21.54903 -21.39987 -20.55235 -18.56878 -17.41825 -17.35950 -16.51156 -16.21381 -15.91840 -15.44704 -15.01476 -14.78906 -14.39984 -14.29596 -13.88552 -13.61871 -13.24642 -12.89972 -12.72680 -12.58274 -12.51162 -12.34687 -12.25438 -12.04496 -11.94040 -11.56931 -11.28370 -11.17890 -10.86706 -10.70695 -10.60926 -10.33557 -10.17579 -10.06850 -9.73856 -9.65560 -9.06550 -8.45765 -8.43452 -8.32758 -7.77570 -6.03472 -4.08294 1.90607 2.44657 2.75746 3.15853 3.30387 3.37572 3.40914 3.50838 4.05398 4.45770 4.75230 4.81402 4.91392 4.99596 5.12690 5.17382 5.21902 5.25283 5.32040 5.36065 5.45056 5.51092 5.61537 5.69090 5.71999 5.76699 5.88450 5.89207 5.95275 6.03142 6.04092 6.09644 6.21563 6.27535 6.29960 6.43374 6.66151 6.82592 7.06662 7.23712 7.33859 7.45679 7.51991 7.92580 8.23160 8.35249 8.90609 9.07688 9.56685 11.04883 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009093 B = 0.005727 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.663298 B = 4888.094134 C = 7346.416473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.246 3.754 10 N -0.596 5.596 11 C 0.186 3.814 12 C -0.012 4.012 13 C -0.215 4.215 14 C -0.217 4.217 15 C -0.044 4.044 16 O -0.165 6.165 17 C 0.512 3.488 18 O -0.525 6.525 19 C -0.120 4.120 20 C -0.092 4.092 21 C -0.155 4.155 22 C -0.085 4.085 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.078 4.078 26 H 0.263 0.737 27 H 0.043 0.957 28 H 0.033 0.967 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.198 0.802 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.475 -16.805 0.036 18.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.077 0.923 9 C 0.127 3.873 10 N -0.328 5.328 11 C 0.061 3.939 12 C -0.065 4.065 13 C -0.235 4.235 14 C -0.237 4.237 15 C -0.112 4.112 16 O -0.060 6.060 17 C 0.298 3.702 18 O -0.401 6.401 19 C -0.159 4.159 20 C -0.092 4.092 21 C -0.173 4.173 22 C -0.122 4.122 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.115 4.115 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.215 0.785 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.989 -16.108 -0.415 17.563 hybrid contribution 0.298 0.727 0.205 0.812 sum 7.286 -15.380 -0.209 17.020 Atomic orbital electron populations 1.69950 1.06011 1.26878 1.50406 1.24933 0.94857 0.99205 0.95069 0.86450 0.79994 0.83437 0.77582 1.19786 1.20895 1.20963 1.21447 0.93356 0.90565 1.51077 0.92339 1.19320 0.87423 0.81958 0.98557 1.48327 1.46399 1.34779 1.03265 1.19881 0.92919 0.92624 0.88460 1.23341 0.89948 0.96862 0.96330 1.21625 1.02511 0.93043 1.06353 1.21751 0.97893 1.00496 1.03521 1.24013 1.00513 0.82133 1.04584 1.84117 1.34441 1.32731 1.54680 1.20283 0.82247 0.83596 0.84028 1.90677 1.57683 1.61075 1.30682 1.21118 0.99978 0.98388 0.96453 1.20281 0.95615 0.98702 0.94630 1.21794 0.98506 1.00183 0.96791 1.20372 0.99463 0.98056 0.94327 1.21585 0.95863 0.97878 1.00247 1.21577 0.95980 1.02144 0.95906 1.20320 0.99151 0.97409 0.94641 0.92780 0.93865 0.94894 0.88231 0.88076 0.83627 0.83822 0.78501 0.89075 0.88839 0.88180 0.91568 0.91007 0.92063 0.92099 0.92080 0.91333 0.91500 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.53 -14.92 9.39 -34.44 -0.32 -15.25 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.25 6.53 5.16 -5.19 -0.03 6.51 16 10 N -0.60 -12.62 2.44 -176.42 -0.43 -13.06 16 11 C 0.19 3.06 5.74 -5.19 -0.03 3.03 16 12 C -0.01 -0.20 6.90 -35.62 -0.25 -0.44 16 13 C -0.22 -2.95 9.98 -39.70 -0.40 -3.35 16 14 C -0.22 -2.74 10.91 -39.71 -0.43 -3.17 16 15 C -0.04 -0.58 12.09 29.41 0.36 -0.22 16 16 O -0.17 -2.77 10.65 5.68 0.06 -2.71 16 17 C 0.51 10.61 7.66 -10.98 -0.08 10.53 16 18 O -0.53 -13.27 15.61 5.57 0.09 -13.18 16 19 C -0.12 -1.79 4.26 -29.03 -0.12 -1.91 16 20 C -0.09 -1.36 4.33 -100.94 -0.44 -1.79 16 21 C -0.15 -2.19 9.37 -35.90 -0.34 -2.52 16 22 C -0.09 -1.01 6.11 -28.17 -0.17 -1.18 16 23 C -0.12 -1.26 6.01 -26.52 -0.16 -1.42 16 24 C -0.12 -1.45 6.01 -26.52 -0.16 -1.61 16 25 C -0.08 -1.06 5.80 -28.18 -0.16 -1.22 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 28 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.10 1.27 6.44 -51.93 -0.33 0.94 16 30 H 0.10 1.70 8.07 -51.93 -0.42 1.28 16 31 H 0.15 1.68 6.17 -52.49 -0.32 1.35 16 32 H 0.14 1.42 8.06 -52.48 -0.42 0.99 16 33 H 0.20 1.81 8.06 -52.48 -0.42 1.39 16 34 H 0.09 1.18 7.06 -51.93 -0.37 0.81 16 35 H 0.09 1.21 5.09 -51.93 -0.26 0.95 16 36 H 0.10 1.40 7.74 -52.49 -0.41 1.00 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.61 8.12 -51.93 -0.42 0.18 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.97 8.13 -51.92 -0.42 0.55 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 361.44 15.07 5.45 5.45 Total: -1.00 -34.18 361.44 -8.64 -42.82 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.69 Total: 2.22 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -2.83 Total: -12.37 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.31 Total: -39.18 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.15 Total: -15.89 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.18 -8.64 -42.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264488058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.924 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds