Wall clock time and date at job start Tue Mar 31 2020 07:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86800 * 120.00378 * 2 1 4 4 H 1.48494 * 109.47177 * 270.00714 * 3 2 1 5 5 H 1.48506 * 109.46857 * 30.00397 * 3 2 1 6 6 H 1.48498 * 109.47369 * 150.00304 * 3 2 1 7 7 C 1.38654 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00041 * 179.97438 * 7 2 1 9 9 O 1.34835 * 120.00249 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00188 * 185.06037 * 9 7 2 11 11 C 1.38877 * 120.06610 * 354.46241 * 10 9 7 12 12 C 1.38102 * 119.92887 * 180.02562 * 11 10 9 13 13 C 1.38297 * 120.06687 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.92968 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47182 * 89.99565 * 14 13 12 16 16 O 1.21286 * 120.00189 * 0.02562 * 15 14 13 17 17 N 1.34770 * 119.99866 * 179.97438 * 15 14 13 18 18 C 1.46496 * 120.00180 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47565 * 179.97438 * 18 17 15 20 20 C 1.54258 * 110.03249 * 292.90915 * 19 18 17 21 21 C 1.54967 * 104.16101 * 217.13237 * 20 19 18 22 22 C 1.54895 * 102.77656 * 37.88967 * 21 20 19 23 23 C 1.53871 * 110.03425 * 175.68880 * 19 18 17 24 24 C 1.38303 * 120.14082 * 0.24626 * 13 12 11 25 25 C 1.38101 * 120.06592 * 359.45327 * 24 13 12 26 26 H 0.96998 * 119.99848 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.03917 * 359.97438 * 11 10 9 28 28 H 1.08002 * 119.96608 * 179.97438 * 12 11 10 29 29 H 1.08996 * 109.46585 * 329.99650 * 14 13 12 30 30 H 1.08998 * 109.47237 * 209.99771 * 14 13 12 31 31 H 0.96999 * 120.00126 * 359.97438 * 17 15 14 32 32 H 1.09008 * 109.47396 * 299.99966 * 18 17 15 33 33 H 1.09002 * 109.47584 * 59.99738 * 18 17 15 34 34 H 1.09006 * 110.01630 * 54.29995 * 19 18 17 35 35 H 1.09001 * 110.48681 * 335.78114 * 20 19 18 36 36 H 1.09003 * 110.48773 * 98.42763 * 20 19 18 37 37 H 1.09000 * 110.72000 * 279.57259 * 21 20 19 38 38 H 1.09000 * 110.92517 * 156.29588 * 21 20 19 39 39 H 1.08997 * 110.48906 * 203.40779 * 22 21 20 40 40 H 1.09002 * 110.59860 * 80.81193 * 22 21 20 41 41 H 1.09006 * 110.03476 * 238.56971 * 23 19 18 42 42 H 1.09004 * 110.03407 * 0.02562 * 23 19 18 43 43 H 1.08003 * 119.96427 * 179.70779 * 24 13 12 44 44 H 1.07996 * 120.03647 * 180.26452 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4472 2.6526 0.7002 6 1 3.5473 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1056 11 6 3.4571 -3.4396 0.0921 12 6 4.2023 -4.5973 0.1998 13 6 3.5685 -5.8206 0.3204 14 6 4.3848 -7.0820 0.4370 15 6 4.6643 -7.3669 1.8902 16 8 4.2419 -6.6195 2.7469 17 7 5.3829 -8.4528 2.2380 18 6 5.6542 -8.7301 3.6506 19 6 6.4819 -10.0114 3.7692 20 6 5.6421 -11.2261 3.3232 21 6 6.0706 -12.3588 4.2900 22 6 6.2456 -11.6124 5.6360 23 6 6.8658 -10.2568 5.2388 24 6 2.1872 -5.8893 0.3284 25 6 1.4365 -4.7346 0.2274 26 1 -0.4850 0.8400 0.0004 27 1 3.9526 -2.4847 -0.0032 28 1 5.2811 -4.5474 0.1890 29 1 5.3270 -6.9557 -0.0962 30 1 3.8308 -7.9147 0.0036 31 1 5.7198 -9.0512 1.5529 32 1 6.2084 -7.8976 4.0844 33 1 4.7118 -8.8561 4.1837 34 1 7.3802 -9.9333 3.1566 35 1 4.5783 -11.0147 3.4311 36 1 5.8762 -11.4941 2.2928 37 1 7.0128 -12.8035 3.9696 38 1 5.2933 -13.1188 4.3681 39 1 6.9195 -12.1625 6.2925 40 1 5.2804 -11.4630 6.1199 41 1 7.9504 -10.2987 5.3395 42 1 6.4621 -9.4633 5.8678 43 1 1.6953 -6.8465 0.4180 44 1 0.3579 -4.7884 0.2380 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264615521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:57 Heat of formation + Delta-G solvation = -85.638652 kcal Electronic energy + Delta-G solvation = -23448.349703 eV Core-core repulsion = 19943.254031 eV Total energy + Delta-G solvation = -3505.095672 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.10823 -40.45522 -39.17343 -38.14433 -35.43178 -34.39574 -32.92806 -31.77664 -30.82637 -29.53700 -28.21083 -27.06502 -25.18568 -23.63258 -22.53948 -21.63481 -21.28767 -20.44774 -19.83960 -18.85481 -17.89203 -17.45426 -16.76052 -16.48013 -16.24101 -16.06253 -15.74355 -15.58759 -15.48975 -15.03174 -14.72996 -14.43086 -14.39249 -14.15777 -14.08095 -13.60398 -13.30575 -12.96759 -12.73998 -12.48557 -12.33189 -12.25688 -12.14827 -12.10184 -11.97566 -11.88280 -11.74805 -11.47346 -11.33906 -11.17667 -10.89694 -10.72293 -10.02428 -9.75944 -8.89470 -8.47465 -6.15625 0.61808 0.68003 1.33368 1.43231 1.51609 1.76599 2.17418 2.31325 2.85846 3.18134 3.52869 3.65497 3.69935 3.81327 3.88479 4.06262 4.18534 4.26230 4.34521 4.42396 4.51314 4.53191 4.60391 4.60436 4.72939 4.73355 4.81341 4.82992 4.91475 4.94210 5.07368 5.09990 5.11224 5.14840 5.27737 5.31158 5.34805 5.45955 5.49837 5.56943 5.58885 5.71940 5.78748 6.02873 6.23862 6.67986 6.96970 7.40659 7.78534 8.76044 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.032303 B = 0.002238 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.577303 B =12507.621154 C =12807.367006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.026 4.026 3 Si 1.021 2.979 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.244 4.244 12 C -0.061 4.061 13 C -0.145 4.145 14 C -0.077 4.077 15 C 0.507 3.493 16 O -0.585 6.585 17 N -0.717 5.717 18 C 0.127 3.873 19 C -0.094 4.094 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.121 4.121 24 C -0.059 4.059 25 C -0.207 4.207 26 H 0.273 0.727 27 H 0.117 0.883 28 H 0.138 0.862 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.417 0.583 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.147 0.853 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.569 -25.899 4.529 31.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.223 4.223 3 Si 0.840 3.160 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.264 4.264 12 C -0.079 4.079 13 C -0.146 4.146 14 C -0.117 4.117 15 C 0.295 3.705 16 O -0.464 6.464 17 N -0.370 5.370 18 C 0.003 3.997 19 C -0.113 4.113 20 C -0.158 4.158 21 C -0.161 4.161 22 C -0.166 4.166 23 C -0.159 4.159 24 C -0.076 4.076 25 C -0.226 4.226 26 H 0.082 0.918 27 H 0.135 0.865 28 H 0.156 0.844 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.255 0.745 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.164 0.836 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 16.871 -25.205 5.130 30.761 hybrid contribution -0.144 1.050 -0.015 1.060 sum 16.727 -24.155 5.116 29.824 Atomic orbital electron populations 1.70192 1.08009 1.28771 1.49006 1.26634 0.96931 1.02797 0.95908 0.84566 0.77672 0.74429 0.79379 1.18439 1.19502 1.17922 1.21820 0.92475 0.81526 1.53199 0.88295 1.83937 1.35936 1.12575 1.81622 1.19939 0.91672 0.87990 0.94332 1.21233 0.93137 1.00016 1.11977 1.20943 0.99708 0.91167 0.96104 1.19287 0.93375 0.94655 1.07318 1.20539 1.02639 0.96354 0.92123 1.21230 0.77027 0.80182 0.92048 1.90756 1.52649 1.49321 1.53717 1.45875 1.55223 1.26867 1.09061 1.21457 0.98884 0.97264 0.82078 1.21984 0.98552 0.92824 0.97936 1.22494 0.99147 0.94054 1.00150 1.22512 1.01761 0.97267 0.94586 1.22388 1.00689 0.95653 0.97828 1.22164 1.01369 0.97683 0.94728 1.20886 0.93561 0.96924 0.96271 1.20445 0.99897 0.90723 1.11540 0.91839 0.86502 0.84384 0.85273 0.85050 0.74518 0.93310 0.93408 0.88881 0.92415 0.89921 0.90594 0.91401 0.90949 0.92380 0.90511 0.92392 0.83555 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.52 13.67 21.61 0.30 -58.23 16 2 C -0.03 -1.51 5.49 84.83 0.47 -1.05 16 3 Si 1.02 44.60 29.55 68.60 2.03 46.62 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.41 -25.32 9.49 67.92 0.64 -24.68 16 8 H 0.10 5.59 5.20 -2.91 -0.02 5.58 16 9 O -0.23 -14.86 9.76 -22.81 -0.22 -15.09 16 10 C 0.11 5.92 6.65 22.57 0.15 6.07 16 11 C -0.24 -11.48 9.17 22.39 0.21 -11.28 16 12 C -0.06 -2.27 9.69 22.25 0.22 -2.06 16 13 C -0.15 -4.74 4.38 -19.83 -0.09 -4.83 16 14 C -0.08 -1.55 5.83 29.10 0.17 -1.38 16 15 C 0.51 12.55 7.82 87.66 0.69 13.24 16 16 O -0.59 -21.96 16.03 -3.05 -0.05 -22.01 16 17 N -0.72 -11.44 5.39 -463.06 -2.50 -13.94 16 18 C 0.13 2.18 4.73 86.38 0.41 2.59 16 19 C -0.09 -0.98 2.97 -10.07 -0.03 -1.01 16 20 C -0.12 -1.08 6.05 31.69 0.19 -0.89 16 21 C -0.12 -1.03 6.91 31.91 0.22 -0.81 16 22 C -0.13 -1.27 6.83 31.67 0.22 -1.05 16 23 C -0.12 -1.30 6.46 31.32 0.20 -1.10 16 24 C -0.06 -2.11 9.69 22.25 0.22 -1.90 16 25 C -0.21 -9.52 9.99 22.39 0.22 -9.30 16 26 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 27 H 0.12 5.56 5.64 -2.91 -0.02 5.54 16 28 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 29 H 0.13 1.76 8.08 -2.39 -0.02 1.74 16 30 H 0.13 1.74 8.08 -2.39 -0.02 1.72 16 31 H 0.42 3.38 8.33 -92.71 -0.77 2.61 16 32 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.05 1.01 8.02 -2.39 -0.02 0.99 16 34 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.06 0.69 7.77 -2.39 -0.02 0.67 16 36 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.06 0.75 7.67 -2.38 -0.02 0.74 16 43 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 44 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -83.32 364.30 3.88 -79.44 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.23 Total: 22.62 kcal Atomic # 6 Polarization: -43.53 SS G_CDS: 4.10 Total: -39.43 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -2.20 Total: -72.16 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.27 Total: -37.09 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -83.32 3.88 -79.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264615521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.196 kcal (2) G-P(sol) polarization free energy of solvation -83.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds