Wall clock time and date at job start Tue Mar 31 2020 08:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86801 * 120.00137 * 2 1 4 4 H 1.48502 * 109.46807 * 270.00325 * 3 2 1 5 5 H 1.48499 * 109.46908 * 29.99867 * 3 2 1 6 6 H 1.48497 * 109.47561 * 150.00181 * 3 2 1 7 7 C 1.38655 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99735 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00117 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00108 * 185.05746 * 9 7 2 11 11 C 1.38887 * 120.06927 * 354.46187 * 10 9 7 12 12 C 1.38099 * 119.93022 * 179.97438 * 11 10 9 13 13 C 1.38304 * 120.06872 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.92846 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.47104 * 89.99949 * 14 13 12 16 16 C 1.44943 * 110.99824 * 302.17908 * 15 14 13 17 17 C 1.52076 * 112.58982 * 188.72543 * 16 15 14 18 18 O 1.42289 * 110.34303 * 49.37028 * 17 16 15 19 19 C 1.42871 * 114.58212 * 300.53201 * 18 17 16 20 20 H 1.08993 * 112.20711 * 292.48542 * 19 18 17 21 21 C 1.54835 * 107.64963 * 169.31212 * 19 18 17 22 22 C 1.54130 * 106.29805 * 268.61161 * 21 19 18 23 23 C 1.54544 * 106.40450 * 359.65112 * 22 21 19 24 24 C 1.44247 * 110.99477 * 169.99925 * 15 14 13 25 25 H 1.09002 * 109.64417 * 292.44558 * 24 15 14 26 26 C 1.38298 * 120.13843 * 0.27477 * 13 12 11 27 27 C 1.38100 * 120.06864 * 359.49185 * 26 13 12 28 28 H 0.96992 * 120.00134 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.03173 * 0.02562 * 11 10 9 30 30 H 1.08000 * 119.96235 * 180.02562 * 12 11 10 31 31 H 1.08998 * 109.47251 * 329.99547 * 14 13 12 32 32 H 1.08996 * 109.46848 * 210.00442 * 14 13 12 33 33 H 1.09001 * 108.85812 * 309.52607 * 16 15 14 34 34 H 1.08996 * 108.85795 * 67.92965 * 16 15 14 35 35 H 1.08992 * 109.33098 * 289.10099 * 17 16 15 36 36 H 1.09002 * 109.18057 * 169.53992 * 17 16 15 37 37 H 1.08999 * 110.08902 * 149.40425 * 21 19 18 38 38 H 1.08998 * 110.14125 * 27.84866 * 21 19 18 39 39 H 1.09002 * 110.06991 * 240.41530 * 22 21 19 40 40 H 1.09003 * 110.06937 * 118.88381 * 22 21 19 41 41 H 1.09000 * 110.60000 * 217.23025 * 23 22 21 42 42 H 1.09006 * 110.73065 * 94.35136 * 23 22 21 43 43 H 1.08002 * 119.96670 * 179.72077 * 26 13 12 44 44 H 1.08005 * 120.03552 * 180.25815 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0016 10 6 2.0700 -3.5047 0.1046 11 6 3.4573 -3.4395 0.0921 12 6 4.2024 -4.5971 0.2008 13 6 3.5686 -5.8204 0.3225 14 6 4.3848 -7.0817 0.4404 15 7 4.6572 -7.3581 1.8572 16 6 5.3495 -6.2470 2.4794 17 6 5.8368 -6.5742 3.8823 18 8 6.5385 -7.8120 3.8860 19 6 5.7696 -8.9325 3.4450 20 1 4.9661 -9.1794 4.1387 21 6 6.7416 -10.1221 3.2517 22 6 7.2020 -10.0702 1.7817 23 6 6.4853 -8.8594 1.1424 24 6 5.2314 -8.6705 2.0266 25 1 4.4900 -9.4297 1.7777 26 6 2.1873 -5.8890 0.3300 27 6 1.4366 -4.7345 0.2265 28 1 -0.4850 0.8400 -0.0004 29 1 3.9527 -2.4844 -0.0016 30 1 5.2812 -4.5471 0.1917 31 1 5.3270 -6.9559 -0.0930 32 1 3.8309 -7.9146 0.0076 33 1 6.2066 -5.9762 1.8628 34 1 4.6722 -5.3947 2.5316 35 1 4.9816 -6.6424 4.5545 36 1 6.5022 -5.7815 4.2242 37 1 6.2268 -11.0622 3.4498 38 1 7.5991 -10.0180 3.9165 39 1 6.9165 -10.9880 1.2677 40 1 8.2824 -9.9339 1.7327 41 1 6.1994 -9.0819 0.1144 42 1 7.1180 -7.9725 1.1799 43 1 1.6953 -6.8462 0.4207 44 1 0.3579 -4.7884 0.2367 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265020470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:53 Heat of formation + Delta-G solvation = -44.053484 kcal Electronic energy + Delta-G solvation = -24863.080449 eV Core-core repulsion = 21359.788046 eV Total energy + Delta-G solvation = -3503.292404 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.60166 -39.01783 -37.06905 -35.94939 -35.24273 -32.32094 -30.38501 -30.22237 -29.52920 -28.31438 -26.72128 -25.36425 -23.98874 -23.05120 -21.88243 -20.87759 -20.13266 -19.02544 -17.98503 -17.04650 -16.88880 -16.53880 -15.94456 -15.36368 -14.86899 -14.62657 -14.41722 -14.19452 -13.93821 -13.84354 -13.52801 -13.37697 -12.97989 -12.77926 -12.66511 -12.25941 -11.84987 -11.72600 -11.55478 -11.50273 -11.38657 -11.26894 -11.21926 -10.83435 -10.75740 -10.63741 -10.53269 -10.46934 -10.42492 -9.54969 -9.33696 -8.84315 -8.18151 -8.01712 -7.17785 -6.46076 -4.04959 2.21720 2.26380 3.11466 3.12664 3.17454 3.60997 3.85733 3.95802 4.34438 4.53429 4.65371 4.66814 4.94310 5.03044 5.09014 5.17037 5.17298 5.25332 5.28073 5.30603 5.41921 5.46594 5.49797 5.58489 5.63014 5.69606 5.72222 5.78577 5.81739 5.87350 5.89575 5.98346 6.10145 6.14549 6.21733 6.42600 6.70297 6.89685 7.03846 7.11736 7.15805 7.25013 7.36656 7.42151 7.47158 7.82548 7.98984 8.99625 9.69993 10.71997 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.028411 B = 0.002983 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.308179 B = 9384.425118 C = 9800.881449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.065 4.065 13 C -0.183 4.183 14 C 0.128 3.872 15 N -0.551 5.551 16 C 0.041 3.959 17 C 0.061 3.939 18 O -0.378 6.378 19 C 0.089 3.911 20 H 0.074 0.926 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.153 4.153 24 C 0.072 3.928 25 H 0.090 0.910 26 C -0.052 4.052 27 C -0.195 4.195 28 H 0.270 0.730 29 H 0.126 0.874 30 H 0.102 0.898 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.304 -17.106 4.644 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.083 4.083 13 C -0.185 4.185 14 C 0.003 3.997 15 N -0.275 5.275 16 C -0.087 4.087 17 C -0.016 4.016 18 O -0.297 6.297 19 C 0.031 3.969 20 H 0.092 0.908 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.193 4.193 24 C -0.038 4.038 25 H 0.108 0.892 26 C -0.071 4.071 27 C -0.214 4.214 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.120 0.880 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.129 0.871 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.675 -16.911 4.915 21.129 hybrid contribution 0.949 1.032 -0.520 1.496 sum 12.624 -15.878 4.395 20.756 Atomic orbital electron populations 1.70033 1.05963 1.27679 1.46077 1.25284 0.95830 0.98823 0.96555 0.85723 0.78935 0.80129 0.78714 1.19888 1.20233 1.19196 1.21318 0.91771 0.80843 1.52880 0.89107 1.83980 1.34373 1.11470 1.78295 1.19399 0.90257 0.88046 0.92051 1.21121 0.93822 0.98774 1.11671 1.20600 0.97975 0.91932 0.97824 1.19100 0.93632 0.93473 1.12267 1.20666 0.97240 0.95822 0.86017 1.58471 1.52124 1.00823 1.16104 1.21912 0.97334 0.94510 0.94935 1.22380 0.96932 0.86250 0.95998 1.87793 1.39241 1.15849 1.86832 1.22980 0.93435 0.86710 0.93769 0.90805 1.22353 0.99446 0.96455 0.97323 1.22102 1.00261 0.98152 0.95119 1.22997 0.98136 0.98645 0.99495 1.22299 0.94661 0.91334 0.95487 0.89220 1.20449 0.92783 0.96660 0.97214 1.20218 0.99561 0.90345 1.11285 0.92008 0.85676 0.88032 0.94791 0.90913 0.95118 0.88927 0.92762 0.88474 0.90527 0.90460 0.91758 0.91848 0.91554 0.91475 0.87109 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.28 13.67 55.48 0.76 -24.52 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.46 29.55 -169.99 -5.02 15.44 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.39 -10.91 9.49 30.89 0.29 -10.62 16 8 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 9 O -0.18 -5.07 9.76 0.05 0.00 -5.07 16 10 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 11 C -0.23 -5.03 9.17 -39.39 -0.36 -5.39 16 12 C -0.06 -1.16 8.06 -39.61 -0.32 -1.48 16 13 C -0.18 -3.06 4.59 -104.58 -0.48 -3.54 16 14 C 0.13 1.74 4.47 -4.98 -0.02 1.72 16 15 N -0.55 -7.20 4.41 -230.73 -1.02 -8.22 16 16 C 0.04 0.54 4.50 -5.35 -0.02 0.52 16 17 C 0.06 0.73 6.96 36.69 0.26 0.98 16 18 O -0.38 -4.67 10.09 -35.23 -0.36 -5.02 16 19 C 0.09 0.94 3.86 -25.27 -0.10 0.84 16 20 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 21 C -0.12 -1.00 6.49 -25.17 -0.16 -1.16 16 22 C -0.12 -1.00 6.82 -25.33 -0.17 -1.17 16 23 C -0.15 -1.56 4.92 -25.09 -0.12 -1.68 16 24 C 0.07 0.79 2.76 -67.80 -0.19 0.60 16 25 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 26 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 27 C -0.19 -4.10 9.99 -39.40 -0.39 -4.49 16 28 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.13 2.70 5.64 -52.48 -0.30 2.41 16 30 H 0.10 1.60 7.97 -52.49 -0.42 1.19 16 31 H 0.03 0.45 7.28 -51.93 -0.38 0.07 16 32 H 0.07 0.91 8.01 -51.93 -0.42 0.49 16 33 H 0.03 0.41 7.66 -51.93 -0.40 0.02 16 34 H 0.09 1.40 6.55 -51.93 -0.34 1.06 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.67 8.04 -51.93 -0.42 0.26 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.64 7.90 -51.93 -0.41 0.23 16 42 H 0.07 0.80 7.59 -51.93 -0.39 0.40 16 43 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 345.98 15.07 5.21 5.21 Total: -1.00 -30.16 345.98 -9.64 -39.80 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.68 Total: 4.08 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -2.54 Total: -21.71 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: -0.26 Total: -32.74 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.36 Total: -10.09 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.16 -9.64 -39.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265020470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.249 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds