Wall clock time and date at job start Tue Mar 31 2020 08:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86801 * 120.00137 * 2 1 4 4 H 1.48502 * 109.46807 * 270.00325 * 3 2 1 5 5 H 1.48499 * 109.46908 * 29.99867 * 3 2 1 6 6 H 1.48497 * 109.47561 * 150.00181 * 3 2 1 7 7 C 1.38655 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99735 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00117 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00108 * 185.05746 * 9 7 2 11 11 C 1.38887 * 120.06927 * 354.46187 * 10 9 7 12 12 C 1.38099 * 119.93022 * 179.97438 * 11 10 9 13 13 C 1.38304 * 120.06872 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.92846 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.47104 * 89.99949 * 14 13 12 16 16 C 1.44943 * 110.99824 * 302.17908 * 15 14 13 17 17 C 1.52076 * 112.58982 * 188.72543 * 16 15 14 18 18 O 1.42289 * 110.34303 * 49.37028 * 17 16 15 19 19 C 1.42871 * 114.58212 * 300.53201 * 18 17 16 20 20 H 1.08993 * 112.20711 * 292.48542 * 19 18 17 21 21 C 1.54835 * 107.64963 * 169.31212 * 19 18 17 22 22 C 1.54130 * 106.29805 * 268.61161 * 21 19 18 23 23 C 1.54544 * 106.40450 * 359.65112 * 22 21 19 24 24 C 1.44247 * 110.99477 * 169.99925 * 15 14 13 25 25 H 1.09002 * 109.64417 * 292.44558 * 24 15 14 26 26 C 1.38298 * 120.13843 * 0.27477 * 13 12 11 27 27 C 1.38100 * 120.06864 * 359.49185 * 26 13 12 28 28 H 0.96992 * 120.00134 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.03173 * 0.02562 * 11 10 9 30 30 H 1.08000 * 119.96235 * 180.02562 * 12 11 10 31 31 H 1.08998 * 109.47251 * 329.99547 * 14 13 12 32 32 H 1.08996 * 109.46848 * 210.00442 * 14 13 12 33 33 H 1.09001 * 108.85812 * 309.52607 * 16 15 14 34 34 H 1.08996 * 108.85795 * 67.92965 * 16 15 14 35 35 H 1.08992 * 109.33098 * 289.10099 * 17 16 15 36 36 H 1.09002 * 109.18057 * 169.53992 * 17 16 15 37 37 H 1.08999 * 110.08902 * 149.40425 * 21 19 18 38 38 H 1.08998 * 110.14125 * 27.84866 * 21 19 18 39 39 H 1.09002 * 110.06991 * 240.41530 * 22 21 19 40 40 H 1.09003 * 110.06937 * 118.88381 * 22 21 19 41 41 H 1.09000 * 110.60000 * 217.23025 * 23 22 21 42 42 H 1.09006 * 110.73065 * 94.35136 * 23 22 21 43 43 H 1.08002 * 119.96670 * 179.72077 * 26 13 12 44 44 H 1.08005 * 120.03552 * 180.25815 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0016 10 6 2.0700 -3.5047 0.1046 11 6 3.4573 -3.4395 0.0921 12 6 4.2024 -4.5971 0.2008 13 6 3.5686 -5.8204 0.3225 14 6 4.3848 -7.0817 0.4404 15 7 4.6572 -7.3581 1.8572 16 6 5.3495 -6.2470 2.4794 17 6 5.8368 -6.5742 3.8823 18 8 6.5385 -7.8120 3.8860 19 6 5.7696 -8.9325 3.4450 20 1 4.9661 -9.1794 4.1387 21 6 6.7416 -10.1221 3.2517 22 6 7.2020 -10.0702 1.7817 23 6 6.4853 -8.8594 1.1424 24 6 5.2314 -8.6705 2.0266 25 1 4.4900 -9.4297 1.7777 26 6 2.1873 -5.8890 0.3300 27 6 1.4366 -4.7345 0.2265 28 1 -0.4850 0.8400 -0.0004 29 1 3.9527 -2.4844 -0.0016 30 1 5.2812 -4.5471 0.1917 31 1 5.3270 -6.9559 -0.0930 32 1 3.8309 -7.9146 0.0076 33 1 6.2066 -5.9762 1.8628 34 1 4.6722 -5.3947 2.5316 35 1 4.9816 -6.6424 4.5545 36 1 6.5022 -5.7815 4.2242 37 1 6.2268 -11.0622 3.4498 38 1 7.5991 -10.0180 3.9165 39 1 6.9165 -10.9880 1.2677 40 1 8.2824 -9.9339 1.7327 41 1 6.1994 -9.0819 0.1144 42 1 7.1180 -7.9725 1.1799 43 1 1.6953 -6.8462 0.4207 44 1 0.3579 -4.7884 0.2367 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265020470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:52 Heat of formation + Delta-G solvation = -62.848375 kcal Electronic energy + Delta-G solvation = -24863.895457 eV Core-core repulsion = 21359.788046 eV Total energy + Delta-G solvation = -3504.107411 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55988 -40.67603 -38.61891 -36.87611 -36.36775 -34.29425 -31.82539 -31.72761 -30.54822 -29.08334 -28.02608 -27.13003 -25.14216 -24.14096 -23.44161 -22.14743 -21.12906 -19.96238 -19.82679 -18.79503 -17.85172 -17.55163 -16.83856 -16.50192 -16.41023 -16.20123 -15.70563 -15.52656 -15.29211 -15.10694 -14.86701 -14.71786 -14.37191 -14.11807 -13.78304 -13.59768 -13.40219 -12.94625 -12.72471 -12.60115 -12.43502 -12.39153 -12.31120 -12.17738 -12.13470 -12.08106 -11.84201 -11.42686 -11.32053 -11.16843 -10.79855 -10.46878 -9.76368 -9.10352 -8.85005 -8.47512 -6.15605 0.60344 0.66823 1.34334 1.43344 1.51762 2.17182 2.63080 2.82849 2.98729 3.25549 3.52937 3.57054 3.79248 3.83249 4.01075 4.04381 4.11099 4.16718 4.23723 4.31341 4.42477 4.44281 4.49873 4.60568 4.62573 4.68367 4.73319 4.75939 4.81748 4.83187 4.93552 5.00383 5.06874 5.08873 5.14939 5.19004 5.28566 5.31542 5.42175 5.58140 5.71463 5.80776 6.02785 6.08895 6.22494 6.29009 6.43550 6.97354 7.78606 8.75844 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.028411 B = 0.002983 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.308179 B = 9384.425118 C = 9800.881449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.017 2.983 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.233 6.233 10 C 0.116 3.884 11 C -0.242 4.242 12 C -0.060 4.060 13 C -0.156 4.156 14 C 0.132 3.868 15 N -0.559 5.559 16 C 0.044 3.956 17 C 0.063 3.937 18 O -0.390 6.390 19 C 0.081 3.919 20 H 0.078 0.922 21 C -0.113 4.113 22 C -0.115 4.115 23 C -0.150 4.150 24 C 0.069 3.931 25 H 0.104 0.896 26 C -0.045 4.045 27 C -0.205 4.205 28 H 0.273 0.727 29 H 0.116 0.884 30 H 0.129 0.871 31 H 0.044 0.956 32 H 0.095 0.905 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.146 0.854 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.708 -19.766 4.882 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.139 6.139 10 C 0.066 3.934 11 C -0.261 4.261 12 C -0.078 4.078 13 C -0.157 4.157 14 C 0.006 3.994 15 N -0.283 5.283 16 C -0.084 4.084 17 C -0.014 4.014 18 O -0.309 6.309 19 C 0.023 3.977 20 H 0.095 0.905 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.190 4.190 24 C -0.040 4.040 25 H 0.122 0.878 26 C -0.064 4.064 27 C -0.224 4.224 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.146 0.854 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.164 0.836 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.117 -19.638 5.157 24.729 hybrid contribution 0.328 1.478 -0.549 1.610 sum 14.445 -18.160 4.609 23.658 Atomic orbital electron populations 1.70179 1.08023 1.28793 1.48948 1.26574 0.96832 1.02705 0.95890 0.84605 0.77821 0.74643 0.79264 1.18792 1.19562 1.17687 1.21803 0.92457 0.81477 1.53172 0.88206 1.83943 1.35967 1.12602 1.81430 1.19926 0.91535 0.87933 0.94049 1.21192 0.93087 0.99835 1.12005 1.20873 0.99186 0.91200 0.96588 1.19575 0.93675 0.94571 1.07886 1.20680 0.97335 0.94511 0.86908 1.58407 1.52807 1.01683 1.15383 1.21822 0.96606 0.94041 0.95909 1.22370 0.97192 0.86754 0.95062 1.87794 1.39878 1.16250 1.86966 1.23207 0.94082 0.86846 0.93575 0.90465 1.22374 0.99009 0.96438 0.97269 1.22104 1.00053 0.98117 0.95032 1.22944 0.97489 0.98621 0.99910 1.22417 0.95355 0.90158 0.96035 0.87780 1.20827 0.93216 0.96803 0.95538 1.20466 0.99927 0.90597 1.11451 0.91836 0.86590 0.85353 0.93833 0.88715 0.95367 0.91164 0.92901 0.87371 0.88339 0.90870 0.89944 0.91958 0.90775 0.93436 0.83607 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.94 13.67 21.61 0.30 -56.64 16 2 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 3 Si 1.02 43.09 29.55 68.60 2.03 45.11 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 6 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.41 -24.22 9.49 67.92 0.64 -23.58 16 8 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 9 O -0.23 -14.13 9.76 -22.74 -0.22 -14.35 16 10 C 0.12 5.80 6.65 22.58 0.15 5.95 16 11 C -0.24 -10.55 9.17 22.39 0.21 -10.35 16 12 C -0.06 -2.06 8.06 22.25 0.18 -1.88 16 13 C -0.16 -4.80 4.59 -19.83 -0.09 -4.89 16 14 C 0.13 3.06 4.47 85.56 0.38 3.44 16 15 N -0.56 -12.81 4.41 -883.90 -3.90 -16.71 16 16 C 0.04 1.08 4.50 86.37 0.39 1.47 16 17 C 0.06 1.39 6.96 71.68 0.50 1.89 16 18 O -0.39 -8.76 10.09 -148.98 -1.50 -10.27 16 19 C 0.08 1.46 3.86 31.54 0.12 1.58 16 20 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 21 C -0.11 -1.52 6.49 31.60 0.20 -1.32 16 22 C -0.12 -1.52 6.82 31.50 0.21 -1.30 16 23 C -0.15 -2.53 4.92 31.66 0.16 -2.37 16 24 C 0.07 1.27 2.76 46.27 0.13 1.39 16 25 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 26 C -0.05 -1.52 9.69 22.25 0.22 -1.30 16 27 C -0.21 -8.76 9.99 22.39 0.22 -8.54 16 28 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.12 5.18 5.64 -2.91 -0.02 5.17 16 30 H 0.13 3.74 7.97 -2.91 -0.02 3.71 16 31 H 0.04 0.98 7.28 -2.39 -0.02 0.96 16 32 H 0.09 1.88 8.01 -2.39 -0.02 1.86 16 33 H 0.03 0.70 7.66 -2.39 -0.02 0.68 16 34 H 0.07 2.03 6.55 -2.39 -0.02 2.01 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 1.07 8.04 -2.39 -0.02 1.05 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 1.13 7.90 -2.39 -0.02 1.11 16 42 H 0.05 0.99 7.59 -2.38 -0.02 0.98 16 43 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 44 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -69.91 345.98 1.78 -68.13 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.99 Total: 25.37 kcal Atomic # 6 Polarization: -44.73 SS G_CDS: 4.09 Total: -40.64 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -3.60 Total: -73.35 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -1.73 Total: -24.62 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -69.91 1.78 -68.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265020470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.282 kcal (2) G-P(sol) polarization free energy of solvation -69.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds