Wall clock time and date at job start Tue Mar 31 2020 08:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86804 * 120.00078 * 2 1 4 4 H 1.48498 * 109.46840 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47058 * 299.99929 * 3 2 1 6 6 H 1.48499 * 109.46717 * 60.00120 * 3 2 1 7 7 C 1.39939 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00220 * 197.89892 * 7 2 1 9 9 C 1.41434 * 120.00039 * 17.89800 * 7 2 1 10 10 C 1.40785 * 120.17862 * 204.44355 * 9 7 2 11 11 C 1.37713 * 120.04125 * 180.02562 * 10 9 7 12 12 C 1.38374 * 120.41080 * 359.76238 * 11 10 9 13 13 C 1.39873 * 120.35869 * 0.52046 * 12 11 10 14 14 C 1.47884 * 120.02918 * 179.73451 * 13 12 11 15 15 O 1.21544 * 120.00515 * 179.72523 * 14 13 12 16 16 N 1.34779 * 119.99683 * 359.72671 * 14 13 12 17 17 C 1.46495 * 120.00154 * 180.02562 * 16 14 13 18 18 H 1.09004 * 109.47123 * 325.00176 * 17 16 14 19 19 C 1.52999 * 109.47531 * 84.99843 * 17 16 14 20 20 C 1.53001 * 109.47580 * 180.02562 * 19 17 16 21 21 C 1.52996 * 109.47125 * 300.00207 * 20 19 17 22 22 C 1.53008 * 109.47210 * 59.99434 * 21 20 19 23 23 C 1.52996 * 109.47319 * 205.00139 * 17 16 14 24 24 H 1.09001 * 109.46994 * 299.99319 * 23 17 16 25 25 C 1.52997 * 109.47260 * 59.99747 * 23 17 16 26 26 O 1.42905 * 109.47355 * 185.00261 * 25 23 17 27 27 C 1.39044 * 119.94834 * 359.46275 * 13 12 11 28 28 H 0.96997 * 120.00142 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.98104 * 0.02892 * 10 9 7 30 30 H 1.08002 * 119.79430 * 180.02562 * 11 10 9 31 31 H 1.08003 * 119.82047 * 180.25427 * 12 11 10 32 32 H 0.96999 * 119.99956 * 0.02562 * 16 14 13 33 33 H 1.08996 * 109.47103 * 59.99668 * 19 17 16 34 34 H 1.09006 * 109.47180 * 300.00157 * 19 17 16 35 35 H 1.08994 * 109.47407 * 179.97438 * 20 19 17 36 36 H 1.09001 * 109.46675 * 59.99779 * 20 19 17 37 37 H 1.08994 * 109.47480 * 179.97438 * 21 20 19 38 38 H 1.09004 * 109.47054 * 300.00138 * 21 20 19 39 39 H 1.09004 * 109.46537 * 60.00388 * 22 21 20 40 40 H 1.08999 * 109.46948 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.47143 * 305.00170 * 25 23 17 42 42 H 1.08995 * 109.47530 * 65.00173 * 25 23 17 43 43 H 0.96700 * 113.99929 * 179.97438 * 26 25 23 44 44 H 1.07991 * 120.20000 * 180.29863 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7022 1.3463 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0487 -1.2347 0.2869 9 6 1.3521 -2.4070 -0.3775 10 6 1.8262 -3.6500 0.0831 11 6 1.1857 -4.8119 -0.2862 12 6 0.0719 -4.7676 -1.1060 13 6 -0.4101 -3.5424 -1.5782 14 6 -1.5976 -3.5040 -2.4587 15 8 -2.0190 -2.4387 -2.8647 16 7 -2.2125 -4.6504 -2.8111 17 6 -3.3885 -4.6125 -3.6838 18 1 -3.9764 -3.7215 -3.4630 19 6 -2.9380 -4.5768 -5.1455 20 6 -4.1662 -4.5366 -6.0570 21 6 -5.0205 -5.7829 -5.8170 22 6 -5.4710 -5.8187 -4.3552 23 6 -4.2423 -5.8592 -3.4436 24 1 -3.6545 -6.7501 -3.6646 25 6 -4.6929 -5.8949 -1.9819 26 8 -5.3913 -7.1156 -1.7284 27 6 0.2248 -2.3600 -1.2144 28 1 -0.4850 0.8400 -0.0004 29 1 2.6927 -3.6924 0.7264 30 1 1.5526 -5.7633 0.0698 31 1 -0.4255 -5.6844 -1.3863 32 1 -1.8765 -5.5005 -2.4867 33 1 -2.3502 -5.4676 -5.3664 34 1 -2.3298 -3.6885 -5.3167 35 1 -3.8453 -4.5106 -7.0983 36 1 -4.7537 -3.6454 -5.8359 37 1 -5.8957 -5.7541 -6.4659 38 1 -4.4330 -6.6741 -6.0379 39 1 -6.0585 -4.9275 -4.1342 40 1 -6.0792 -6.7069 -4.1841 41 1 -3.8206 -5.8335 -1.3312 42 1 -5.3535 -5.0507 -1.7846 43 1 -5.7064 -7.2068 -0.8188 44 1 -0.1468 -1.4115 -1.5727 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269095914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:55 Heat of formation + Delta-G solvation = -96.443624 kcal Electronic energy + Delta-G solvation = -24809.633525 eV Core-core repulsion = 21304.069314 eV Total energy + Delta-G solvation = -3505.564210 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.97330 -38.36638 -36.93598 -36.36751 -33.98458 -33.61160 -31.48235 -30.56052 -29.47472 -28.92679 -25.62957 -25.24993 -23.34106 -21.72576 -21.24623 -20.90307 -20.15430 -19.31081 -17.83507 -17.34198 -16.29858 -15.77522 -15.27658 -15.06512 -14.86206 -14.63456 -14.43108 -14.11416 -13.80456 -13.48759 -13.29934 -13.09142 -12.72472 -12.55396 -12.46718 -12.33565 -11.79673 -11.64983 -11.32361 -11.17572 -11.13760 -11.07303 -10.76902 -10.70542 -10.51173 -10.44519 -10.26716 -10.03572 -9.99379 -9.70257 -9.23492 -8.99702 -8.63584 -7.64720 -7.53633 -6.82043 -4.42994 2.19649 2.79286 3.06952 3.11695 3.13766 3.63557 3.85137 3.90947 4.02129 4.58167 4.64962 4.71734 4.82028 5.05043 5.20293 5.23436 5.35839 5.38439 5.43709 5.53715 5.59231 5.61954 5.71956 5.78576 5.93369 6.01941 6.05262 6.07252 6.10851 6.12386 6.26126 6.33111 6.40407 6.70604 6.88893 6.97682 7.01159 7.19709 7.36650 7.49649 7.68778 7.74860 7.91253 8.08819 8.18013 8.49354 8.78832 8.81964 8.95094 10.12693 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.019244 B = 0.003547 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.682925 B = 7892.589022 C = 8523.881135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.219 4.219 13 C -0.128 4.128 14 C 0.565 3.435 15 O -0.545 6.545 16 N -0.735 5.735 17 C 0.154 3.846 18 H 0.087 0.913 19 C -0.128 4.128 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.106 4.106 23 C -0.091 4.091 24 H 0.081 0.919 25 C 0.077 3.923 26 O -0.575 6.575 27 C -0.093 4.093 28 H 0.284 0.716 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.398 0.602 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.378 0.622 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.056 -9.837 -6.289 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.489 4.489 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.232 4.232 11 C -0.116 4.116 12 C -0.239 4.239 13 C -0.132 4.132 14 C 0.356 3.644 15 O -0.423 6.423 16 N -0.388 5.388 17 C 0.049 3.951 18 H 0.105 0.895 19 C -0.167 4.167 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.144 4.144 23 C -0.110 4.110 24 H 0.099 0.901 25 C 0.000 4.000 26 O -0.380 6.380 27 C -0.113 4.113 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.233 0.767 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.225 0.775 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.432 -8.984 -7.194 14.880 hybrid contribution 0.406 0.405 0.887 1.056 sum -9.026 -8.579 -6.307 13.958 Atomic orbital electron populations 1.69795 1.07598 1.29678 1.33664 1.25963 0.94757 1.01560 0.92273 0.86244 0.80912 0.80828 0.78695 1.18320 1.19542 1.19906 1.19626 0.98258 0.91073 1.39908 0.90042 1.17604 0.91186 0.92450 0.89152 1.21103 1.03520 0.92762 1.05783 1.20434 0.96011 0.96721 0.98428 1.20335 1.01328 0.94618 1.07584 1.19488 0.96650 0.95277 1.01743 1.18845 0.83228 0.82895 0.79467 1.90691 1.65980 1.29872 1.55743 1.46080 1.31094 1.09690 1.51909 1.20805 0.86531 0.97947 0.89808 0.89531 1.21914 0.97920 1.02762 0.94084 1.21513 0.96540 0.98239 0.99253 1.21577 0.99516 0.98358 0.96349 1.21492 0.96519 1.02465 0.93949 1.21392 0.97154 0.98497 0.93967 0.90076 1.22243 0.95551 0.85979 0.96275 1.86421 1.76813 1.40337 1.34447 1.21640 0.96498 0.96471 0.96709 0.90497 0.88636 0.88934 0.89313 0.76661 0.91850 0.90984 0.91871 0.91758 0.91983 0.91965 0.91929 0.90955 0.92916 0.93538 0.77502 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.64 10.96 55.55 0.61 -20.04 16 2 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.69 29.60 -169.99 -5.03 13.66 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -12.04 9.05 -37.73 -0.34 -12.38 16 8 H 0.08 2.03 7.91 -52.48 -0.42 1.61 16 9 C 0.10 2.59 5.57 -106.87 -0.60 2.00 16 10 C -0.21 -5.00 9.78 -38.81 -0.38 -5.38 16 11 C -0.10 -2.07 10.01 -39.72 -0.40 -2.47 16 12 C -0.22 -4.55 9.55 -38.92 -0.37 -4.92 16 13 C -0.13 -3.00 5.87 -105.04 -0.62 -3.61 16 14 C 0.56 12.11 7.74 -12.31 -0.10 12.01 16 15 O -0.54 -13.40 16.00 5.33 0.09 -13.32 16 16 N -0.73 -11.90 4.26 -54.74 -0.23 -12.14 16 17 C 0.15 2.15 1.90 -67.94 -0.13 2.02 16 18 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 19 C -0.13 -1.67 5.49 -26.73 -0.15 -1.82 16 20 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 21 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 22 C -0.11 -1.09 5.10 -26.70 -0.14 -1.23 16 23 C -0.09 -1.05 2.01 -90.60 -0.18 -1.23 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 C 0.08 0.89 6.34 37.16 0.24 1.13 16 26 O -0.57 -6.13 13.20 -35.23 -0.46 -6.59 16 27 C -0.09 -2.47 8.24 -38.44 -0.32 -2.78 16 28 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 29 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 30 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.09 1.53 6.38 -52.48 -0.33 1.19 16 32 H 0.40 5.72 6.41 -40.82 -0.26 5.46 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.74 7.82 -51.93 -0.41 0.34 16 41 H 0.05 0.65 7.30 -51.93 -0.38 0.27 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.38 2.51 9.12 45.56 0.42 2.92 16 44 H 0.13 3.83 5.74 -52.49 -0.30 3.53 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -29.95 354.90 -9.43 -39.38 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -5.86 Total: 13.28 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -3.88 Total: -19.59 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.38 Total: -32.17 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.38 Total: -19.91 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.95 -9.43 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269095914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.068 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds