Wall clock time and date at job start Tue Mar 31 2020 08:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86790 * 120.00344 * 2 1 4 4 H 1.48503 * 109.47281 * 240.00132 * 3 2 1 5 5 H 1.48504 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47259 * 119.99989 * 3 2 1 7 7 C 1.39945 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00310 * 162.57198 * 7 2 1 9 9 C 1.41436 * 119.99618 * 342.57001 * 7 2 1 10 10 C 1.40793 * 120.17711 * 154.94901 * 9 7 2 11 11 C 1.37710 * 120.03959 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41123 * 359.73500 * 11 10 9 13 13 C 1.39877 * 120.36047 * 0.51813 * 12 11 10 14 14 C 1.47887 * 120.02537 * 179.75975 * 13 12 11 15 15 O 1.21546 * 119.99884 * 179.72264 * 14 13 12 16 16 N 1.34779 * 119.99967 * 359.45164 * 14 13 12 17 17 C 1.46502 * 120.00078 * 180.27230 * 16 14 13 18 18 H 1.09001 * 109.46692 * 35.00169 * 17 16 14 19 19 C 1.52999 * 109.47198 * 275.00154 * 17 16 14 20 20 C 1.53005 * 109.47093 * 299.99923 * 19 17 16 21 21 C 1.52999 * 109.47029 * 299.99906 * 20 19 17 22 22 C 1.52999 * 109.47107 * 60.00102 * 21 20 19 23 23 C 1.52999 * 109.47269 * 155.00036 * 17 16 14 24 24 H 1.08994 * 109.46986 * 180.02562 * 23 17 16 25 25 C 1.52999 * 109.47107 * 300.00174 * 23 17 16 26 26 O 1.42894 * 109.47187 * 184.99710 * 25 23 17 27 27 C 1.39030 * 119.94669 * 359.48824 * 13 12 11 28 28 H 0.97001 * 119.99615 * 0.02562 * 1 2 3 29 29 H 1.07995 * 119.97496 * 0.03534 * 10 9 7 30 30 H 1.08003 * 119.78893 * 180.02562 * 11 10 9 31 31 H 1.08003 * 119.81666 * 180.25988 * 12 11 10 32 32 H 0.97000 * 119.99745 * 0.27566 * 16 14 13 33 33 H 1.09005 * 109.47023 * 59.99934 * 19 17 16 34 34 H 1.08994 * 109.47245 * 179.97438 * 19 17 16 35 35 H 1.09002 * 109.47095 * 60.00085 * 20 19 17 36 36 H 1.09004 * 109.46883 * 179.97438 * 20 19 17 37 37 H 1.08994 * 109.46877 * 179.97438 * 21 20 19 38 38 H 1.08994 * 109.46986 * 300.00045 * 21 20 19 39 39 H 1.09002 * 109.47080 * 59.99782 * 22 21 20 40 40 H 1.08997 * 109.47161 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47417 * 304.99998 * 25 23 17 42 42 H 1.09008 * 109.47043 * 65.00190 * 25 23 17 43 43 H 0.96703 * 114.00175 * 180.02562 * 26 25 23 44 44 H 1.08001 * 120.19862 * 180.26961 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0507 -1.2334 -0.2807 9 6 1.3493 -2.4088 0.3658 10 6 1.8190 -3.6487 -0.1079 11 6 1.1753 -4.8122 0.2501 12 6 0.0687 -4.7736 1.0800 13 6 -0.4155 -3.5508 1.5562 14 6 -1.6019 -3.5177 2.4385 15 8 -2.0193 -2.4553 2.8561 16 7 -2.2237 -4.6652 2.7750 17 6 -3.4026 -4.6320 3.6441 18 1 -3.9852 -3.7356 3.4318 19 6 -2.9569 -4.6159 5.1076 20 6 -2.1389 -5.8742 5.4056 21 6 -2.9979 -7.1138 5.1476 22 6 -3.4435 -7.1299 3.6841 23 6 -4.2615 -5.8716 3.3861 24 1 -5.1388 -5.8466 4.0325 25 6 -4.7071 -5.8877 1.9226 26 8 -5.6031 -6.9803 1.7095 27 6 0.2228 -2.3669 1.2041 28 1 -0.4849 0.8401 -0.0004 29 1 2.6847 -3.6871 -0.7524 30 1 1.5393 -5.7611 -0.1153 31 1 -0.4262 -5.6923 1.3581 32 1 -1.8905 -5.5131 2.4417 33 1 -2.3450 -3.7327 5.2914 34 1 -3.8340 -4.5907 5.7543 35 1 -1.2618 -5.8989 4.7589 36 1 -1.8211 -5.8624 6.4482 37 1 -2.4150 -8.0101 5.3594 38 1 -3.8749 -7.0890 5.7943 39 1 -2.5664 -7.1546 3.0374 40 1 -4.0550 -8.0132 3.5002 41 1 -5.2131 -4.9516 1.6865 42 1 -3.8352 -6.0020 1.2785 43 1 -5.9265 -7.0524 0.8010 44 1 -0.1450 -1.4209 1.5730 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269095916.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:02 Heat of formation + Delta-G solvation = -93.510147 kcal Electronic energy + Delta-G solvation = -25137.538748 eV Core-core repulsion = 21632.101742 eV Total energy + Delta-G solvation = -3505.437005 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.17478 -38.28996 -36.92088 -36.36162 -33.81504 -33.27641 -31.48875 -30.63814 -29.49632 -29.15736 -25.60275 -25.24794 -23.20288 -22.17300 -21.35393 -20.95854 -19.88576 -18.82020 -17.93034 -17.34237 -16.19472 -15.70241 -15.38954 -15.08698 -14.92914 -14.67650 -14.46847 -14.11954 -13.77684 -13.49347 -13.21144 -13.03055 -12.67551 -12.50098 -12.34948 -12.13457 -12.06941 -11.65693 -11.60610 -11.18738 -11.11766 -11.07084 -10.76075 -10.57264 -10.52270 -10.33708 -10.20359 -10.03222 -9.90656 -9.70690 -9.22406 -9.00565 -8.61626 -7.64236 -7.53396 -6.81270 -4.43070 2.20397 2.80966 3.06635 3.08229 3.15478 3.69508 3.86059 3.91292 4.02991 4.59601 4.62568 4.71873 4.82672 5.07610 5.23469 5.27811 5.34322 5.41861 5.50008 5.56169 5.60348 5.63169 5.74794 5.76402 5.88371 6.04539 6.04898 6.12170 6.14327 6.23462 6.25578 6.37218 6.38405 6.70679 6.91207 6.98040 7.01507 7.19925 7.36769 7.49405 7.68703 7.75059 7.91224 8.09722 8.18486 8.49218 8.78912 8.82085 8.96697 10.13526 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.019862 B = 0.003676 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.369591 B = 7616.179313 C = 7803.073320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.081 0.919 9 C 0.100 3.900 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.564 3.436 15 O -0.546 6.546 16 N -0.729 5.729 17 C 0.154 3.846 18 H 0.087 0.913 19 C -0.128 4.128 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.111 4.111 23 C -0.091 4.091 24 H 0.088 0.912 25 C 0.078 3.922 26 O -0.575 6.575 27 C -0.093 4.093 28 H 0.285 0.715 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.397 0.603 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.378 0.622 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.449 -10.898 5.660 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.099 0.901 9 C 0.097 3.903 10 C -0.232 4.232 11 C -0.116 4.116 12 C -0.239 4.239 13 C -0.131 4.131 14 C 0.355 3.645 15 O -0.424 6.424 16 N -0.384 5.384 17 C 0.048 3.952 18 H 0.105 0.895 19 C -0.167 4.167 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.110 4.110 24 H 0.106 0.894 25 C 0.001 3.999 26 O -0.380 6.380 27 C -0.113 4.113 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.225 0.775 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.857 -10.049 6.585 14.355 hybrid contribution 0.397 0.429 -0.886 1.062 sum -7.460 -9.619 5.699 13.441 Atomic orbital electron populations 1.69780 1.07575 1.29865 1.33599 1.25955 0.94771 1.01518 0.92283 0.86325 0.80116 0.80100 0.79986 1.18966 1.20216 1.18708 1.19564 0.98065 0.91036 1.40344 0.90123 1.17595 0.91197 0.92427 0.89079 1.21102 1.03478 0.92835 1.05758 1.20429 0.96098 0.96708 0.98354 1.20319 1.01498 0.94590 1.07449 1.19485 0.96637 0.95246 1.01720 1.18841 0.83259 0.82894 0.79513 1.90689 1.66236 1.30144 1.55334 1.46094 1.30711 1.09720 1.51899 1.20772 0.86717 0.97615 0.90063 0.89537 1.21891 1.00391 0.98736 0.95661 1.21518 0.98804 0.94188 1.01246 1.21547 0.99641 0.97992 0.96396 1.21526 0.99374 0.97501 0.96495 1.21394 0.98574 0.95216 0.95808 0.89386 1.22228 0.92446 0.88772 0.96487 1.86419 1.65748 1.51619 1.34260 1.21630 0.96436 0.96437 0.96767 0.90394 0.88645 0.88958 0.89446 0.76591 0.90987 0.91464 0.91530 0.92202 0.92058 0.92085 0.92166 0.91041 0.93452 0.93109 0.77508 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.67 10.97 55.55 0.61 -20.06 16 2 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.72 29.59 -169.99 -5.03 13.69 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 7 C -0.46 -12.06 9.05 -37.73 -0.34 -12.41 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 9 C 0.10 2.61 5.57 -106.87 -0.59 2.02 16 10 C -0.21 -4.99 9.78 -38.81 -0.38 -5.37 16 11 C -0.10 -2.06 10.01 -39.73 -0.40 -2.46 16 12 C -0.22 -4.52 9.55 -38.92 -0.37 -4.89 16 13 C -0.13 -2.97 5.87 -105.04 -0.62 -3.58 16 14 C 0.56 11.99 7.74 -12.31 -0.10 11.90 16 15 O -0.55 -13.34 16.00 5.33 0.09 -13.25 16 16 N -0.73 -11.64 3.57 -54.74 -0.20 -11.83 16 17 C 0.15 2.11 2.23 -67.93 -0.15 1.96 16 18 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 19 C -0.13 -1.64 5.60 -26.73 -0.15 -1.79 16 20 C -0.12 -1.37 5.77 -26.73 -0.15 -1.53 16 21 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 22 C -0.11 -1.17 4.93 -26.73 -0.13 -1.31 16 23 C -0.09 -1.03 2.22 -90.62 -0.20 -1.23 16 24 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 25 C 0.08 0.90 6.19 37.16 0.23 1.13 16 26 O -0.58 -6.09 13.19 -35.23 -0.46 -6.55 16 27 C -0.09 -2.45 8.23 -38.44 -0.32 -2.76 16 28 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 29 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.09 1.50 6.38 -52.48 -0.33 1.17 16 32 H 0.40 5.73 4.69 -40.82 -0.19 5.54 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.86 7.60 -51.93 -0.39 0.46 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.65 6.51 -51.93 -0.34 0.32 16 40 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.61 7.61 -51.92 -0.40 0.21 16 43 H 0.38 2.48 9.12 45.56 0.42 2.90 16 44 H 0.13 3.81 5.77 -52.49 -0.30 3.51 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -29.73 350.81 -9.32 -39.06 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -5.69 Total: 13.57 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -3.92 Total: -19.89 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.41 Total: -31.89 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.38 Total: -19.81 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.73 -9.32 -39.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269095916.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.455 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds