Wall clock time and date at job start Tue Mar 31 2020 08:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86795 * 119.99860 * 2 1 4 4 H 1.48506 * 109.47155 * 239.99904 * 3 2 1 5 5 H 1.48493 * 109.47401 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47317 * 120.00186 * 3 2 1 7 7 C 1.40223 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00645 * 197.87910 * 7 2 1 9 9 C 1.41117 * 119.99795 * 17.88358 * 7 2 1 10 10 C 1.40887 * 120.09776 * 204.63775 * 9 7 2 11 11 C 1.36323 * 119.88576 * 179.97438 * 10 9 7 12 12 C 1.40010 * 120.11083 * 0.02562 * 11 10 9 13 13 C 1.47636 * 119.89819 * 179.97438 * 12 11 10 14 14 O 1.21592 * 119.99912 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00065 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00165 * 179.97438 * 15 13 12 17 17 H 1.09008 * 109.47480 * 325.00159 * 16 15 13 18 18 C 1.53002 * 109.47313 * 84.99634 * 16 15 13 19 19 C 1.52996 * 109.47299 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47272 * 299.99821 * 19 18 16 21 21 C 1.53006 * 109.46649 * 60.00213 * 20 19 18 22 22 C 1.52996 * 109.47110 * 299.99886 * 21 20 19 23 23 H 1.08998 * 109.47228 * 300.00245 * 22 21 20 24 24 C 1.53006 * 109.47110 * 180.02562 * 22 21 20 25 25 O 1.42903 * 109.46763 * 64.99926 * 24 22 21 26 26 C 1.40018 * 120.20753 * 0.25158 * 12 11 10 27 27 C 1.36318 * 120.10297 * 359.48605 * 26 12 11 28 28 H 0.96998 * 120.00271 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.06240 * 359.95986 * 10 9 7 30 30 H 1.08001 * 119.94523 * 179.97438 * 11 10 9 31 31 H 0.97000 * 120.00161 * 359.97438 * 15 13 12 32 32 H 1.09008 * 109.46922 * 60.00039 * 18 16 15 33 33 H 1.09003 * 109.47292 * 300.00751 * 18 16 15 34 34 H 1.08998 * 109.46871 * 60.00480 * 19 18 16 35 35 H 1.09003 * 109.46862 * 180.02562 * 19 18 16 36 36 H 1.08997 * 109.46990 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.47316 * 300.00812 * 20 19 18 38 38 H 1.08998 * 109.47275 * 60.00103 * 21 20 19 39 39 H 1.08996 * 109.46912 * 180.02562 * 21 20 19 40 40 H 1.08997 * 109.46985 * 185.00226 * 24 22 21 41 41 H 1.08998 * 109.47076 * 305.00409 * 24 22 21 42 42 H 0.96701 * 113.99665 * 179.97438 * 25 24 22 43 43 H 1.07996 * 119.94763 * 179.74685 * 26 12 11 44 44 H 1.08002 * 120.05427 * 180.23154 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0076 -1.2144 0.0005 8 1 3.0484 -1.2369 0.2877 9 6 1.3531 -2.4071 -0.3742 10 6 1.8266 -3.6494 0.0921 11 6 1.1907 -4.7989 -0.2722 12 6 0.0693 -4.7464 -1.1087 13 6 -0.6154 -5.9942 -1.5008 14 8 -0.2050 -7.0654 -1.0976 15 7 -1.6949 -5.9461 -2.3064 16 6 -2.3740 -7.1843 -2.6959 17 1 -1.6388 -7.9807 -2.8127 18 6 -3.3818 -7.5756 -1.6133 19 6 -4.0906 -8.8691 -2.0198 20 6 -4.8238 -8.6541 -3.3453 21 6 -3.8159 -8.2629 -4.4280 22 6 -3.1071 -6.9693 -4.0215 23 1 -3.8425 -6.1733 -3.9049 24 6 -2.0997 -6.5778 -5.1044 25 8 -2.7964 -6.2638 -6.3119 26 6 -0.4015 -3.5145 -1.5794 27 6 0.2246 -2.3594 -1.2162 28 1 -0.4850 0.8400 -0.0004 29 1 2.6919 -3.6910 0.7369 30 1 1.5531 -5.7517 0.0844 31 1 -2.0221 -5.0916 -2.6284 32 1 -4.1170 -6.7793 -1.4964 33 1 -2.8595 -7.7292 -0.6690 34 1 -3.3552 -9.6652 -2.1362 35 1 -4.8089 -9.1475 -1.2487 36 1 -5.3291 -9.5755 -3.6346 37 1 -5.5591 -7.8579 -3.2288 38 1 -3.0806 -9.0589 -4.5445 39 1 -4.3383 -8.1092 -5.3722 40 1 -1.5324 -5.7072 -4.7753 41 1 -1.4179 -7.4091 -5.2840 42 1 -2.2189 -6.0059 -7.0435 43 1 -1.2644 -3.4792 -2.2278 44 1 -0.1415 -1.4094 -1.5767 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270320348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:11 Heat of formation + Delta-G solvation = -100.533552 kcal Electronic energy + Delta-G solvation = -24571.245815 eV Core-core repulsion = 21065.504251 eV Total energy + Delta-G solvation = -3505.741563 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.90331 -38.32604 -37.00829 -36.35780 -33.89089 -33.78259 -31.46546 -30.55195 -29.47156 -29.03487 -26.03691 -25.33907 -22.92683 -21.59255 -21.25036 -20.87916 -20.10501 -19.37362 -17.61542 -17.50623 -16.63071 -15.92340 -15.45468 -15.13604 -14.85057 -14.37336 -14.27090 -14.00288 -13.81840 -13.43656 -13.29576 -13.09146 -12.76101 -12.56116 -12.31920 -12.11109 -11.93342 -11.76905 -11.39491 -11.28306 -11.22131 -11.12699 -10.99983 -10.72082 -10.64164 -10.43310 -10.24367 -10.07523 -9.98556 -9.57307 -9.36196 -8.94563 -8.56900 -7.73918 -7.56044 -7.05191 -4.62062 2.22272 2.91148 2.93038 2.97019 3.01913 3.72265 3.74229 3.85681 4.04161 4.53440 4.64712 4.73827 4.84108 5.06877 5.22779 5.24799 5.38058 5.40634 5.46917 5.54412 5.56924 5.63477 5.78310 5.92224 5.95263 6.02620 6.05301 6.08501 6.14486 6.15976 6.30339 6.36212 6.44228 6.75271 6.81033 6.94925 7.06286 7.12013 7.41740 7.51030 7.63990 7.77696 7.84115 8.05498 8.23957 8.38028 8.61353 8.73617 9.07817 9.86804 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.003143 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.185017 B = 8907.894746 C = 9459.987351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.443 4.443 8 H 0.084 0.916 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.022 4.022 12 C -0.285 4.285 13 C 0.573 3.427 14 O -0.575 6.575 15 N -0.739 5.739 16 C 0.157 3.843 17 H 0.085 0.915 18 C -0.128 4.128 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.106 4.106 22 C -0.092 4.092 23 H 0.081 0.919 24 C 0.078 3.922 25 O -0.575 6.575 26 C -0.063 4.063 27 C -0.178 4.178 28 H 0.287 0.713 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.396 0.604 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.378 0.622 43 H 0.088 0.912 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.324 -7.762 -8.415 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.471 4.471 8 H 0.103 0.897 9 C 0.126 3.874 10 C -0.259 4.259 11 C -0.041 4.041 12 C -0.290 4.290 13 C 0.368 3.632 14 O -0.457 6.457 15 N -0.392 5.392 16 C 0.051 3.949 17 H 0.103 0.897 18 C -0.167 4.167 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.144 4.144 22 C -0.111 4.111 23 H 0.099 0.901 24 C 0.000 4.000 25 O -0.380 6.380 26 C -0.082 4.082 27 C -0.198 4.198 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.231 0.769 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.225 0.775 43 H 0.106 0.894 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.765 -8.504 -7.734 13.871 hybrid contribution 0.609 1.421 -0.373 1.590 sum -7.156 -7.083 -8.107 12.927 Atomic orbital electron populations 1.69734 1.07910 1.30176 1.31626 1.26097 0.94812 1.01878 0.91894 0.86260 0.80209 0.79446 0.80350 1.18474 1.20042 1.18658 1.19825 0.98431 0.91223 1.37616 0.89748 1.17778 0.90366 0.92150 0.87132 1.20716 1.04623 0.92665 1.07883 1.20361 0.92927 0.97114 0.93695 1.18908 1.04539 0.91087 1.14451 1.18581 0.78530 0.89584 0.76531 1.90630 1.66812 1.31675 1.56564 1.46033 1.31584 1.08774 1.52762 1.20746 0.93875 0.88320 0.91927 0.89735 1.21919 0.98091 0.97391 0.99294 1.21512 0.99296 0.97732 0.96961 1.21578 0.97965 1.01219 0.95066 1.21474 0.98192 0.96016 0.98688 1.21395 0.97509 0.99204 0.93016 0.90087 1.22235 0.93805 0.99266 0.84654 1.86429 1.38312 1.90818 1.22438 1.20469 0.97325 0.92619 0.97784 1.20970 0.99938 0.96892 1.01951 0.90159 0.88419 0.88147 0.76860 0.91882 0.91044 0.91840 0.91935 0.92023 0.91952 0.92007 0.90999 0.92910 0.93654 0.77538 0.89418 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.37 10.95 55.56 0.61 -17.76 16 2 C 0.07 1.73 5.13 -17.31 -0.09 1.64 16 3 Si 0.91 17.15 29.60 -169.99 -5.03 12.12 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.44 -10.96 9.04 -37.74 -0.34 -11.30 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 9 C 0.13 3.26 5.58 -106.80 -0.60 2.67 16 10 C -0.24 -5.77 9.73 -39.27 -0.38 -6.15 16 11 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 12 C -0.29 -6.44 5.89 -104.73 -0.62 -7.06 16 13 C 0.57 11.91 7.73 -12.42 -0.10 11.81 16 14 O -0.57 -13.38 15.99 5.29 0.08 -13.29 16 15 N -0.74 -12.08 4.26 -54.81 -0.23 -12.31 16 16 C 0.16 2.19 1.90 -67.93 -0.13 2.06 16 17 H 0.08 1.33 7.58 -51.92 -0.39 0.93 16 18 C -0.13 -1.70 5.49 -26.73 -0.15 -1.85 16 19 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 20 C -0.12 -1.16 5.92 -26.73 -0.16 -1.31 16 21 C -0.11 -1.09 5.10 -26.73 -0.14 -1.23 16 22 C -0.09 -1.08 2.00 -90.62 -0.18 -1.26 16 23 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 24 C 0.08 0.90 6.34 37.16 0.24 1.14 16 25 O -0.57 -6.23 13.19 -35.23 -0.46 -6.69 16 26 C -0.06 -1.38 9.47 -39.61 -0.38 -1.75 16 27 C -0.18 -4.33 8.63 -39.27 -0.34 -4.67 16 28 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 29 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 30 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 31 H 0.40 5.95 6.40 -40.82 -0.26 5.69 16 32 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.75 7.82 -51.93 -0.41 0.34 16 40 H 0.05 0.65 7.31 -51.93 -0.38 0.27 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.38 2.55 9.12 45.56 0.42 2.96 16 43 H 0.09 1.63 6.37 -52.49 -0.33 1.30 16 44 H 0.12 2.94 6.16 -52.49 -0.32 2.62 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -28.47 354.65 -9.44 -37.91 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -5.86 Total: 14.24 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -3.89 Total: -19.55 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: 0.38 Total: -30.07 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.38 Total: -19.98 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.47 -9.44 -37.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270320348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.627 kcal (2) G-P(sol) polarization free energy of solvation -28.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds