Wall clock time and date at job start Tue Mar 31 2020 08:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86795 * 119.99860 * 2 1 4 4 H 1.48506 * 109.47155 * 239.99904 * 3 2 1 5 5 H 1.48493 * 109.47401 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47317 * 120.00186 * 3 2 1 7 7 C 1.40223 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00645 * 197.87910 * 7 2 1 9 9 C 1.41117 * 119.99795 * 17.88358 * 7 2 1 10 10 C 1.40887 * 120.09776 * 204.63775 * 9 7 2 11 11 C 1.36323 * 119.88576 * 179.97438 * 10 9 7 12 12 C 1.40010 * 120.11083 * 0.02562 * 11 10 9 13 13 C 1.47636 * 119.89819 * 179.97438 * 12 11 10 14 14 O 1.21592 * 119.99912 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00065 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00165 * 179.97438 * 15 13 12 17 17 H 1.09008 * 109.47480 * 325.00159 * 16 15 13 18 18 C 1.53002 * 109.47313 * 84.99634 * 16 15 13 19 19 C 1.52996 * 109.47299 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47272 * 299.99821 * 19 18 16 21 21 C 1.53006 * 109.46649 * 60.00213 * 20 19 18 22 22 C 1.52996 * 109.47110 * 299.99886 * 21 20 19 23 23 H 1.08998 * 109.47228 * 300.00245 * 22 21 20 24 24 C 1.53006 * 109.47110 * 180.02562 * 22 21 20 25 25 O 1.42903 * 109.46763 * 64.99926 * 24 22 21 26 26 C 1.40018 * 120.20753 * 0.25158 * 12 11 10 27 27 C 1.36318 * 120.10297 * 359.48605 * 26 12 11 28 28 H 0.96998 * 120.00271 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.06240 * 359.95986 * 10 9 7 30 30 H 1.08001 * 119.94523 * 179.97438 * 11 10 9 31 31 H 0.97000 * 120.00161 * 359.97438 * 15 13 12 32 32 H 1.09008 * 109.46922 * 60.00039 * 18 16 15 33 33 H 1.09003 * 109.47292 * 300.00751 * 18 16 15 34 34 H 1.08998 * 109.46871 * 60.00480 * 19 18 16 35 35 H 1.09003 * 109.46862 * 180.02562 * 19 18 16 36 36 H 1.08997 * 109.46990 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.47316 * 300.00812 * 20 19 18 38 38 H 1.08998 * 109.47275 * 60.00103 * 21 20 19 39 39 H 1.08996 * 109.46912 * 180.02562 * 21 20 19 40 40 H 1.08997 * 109.46985 * 185.00226 * 24 22 21 41 41 H 1.08998 * 109.47076 * 305.00409 * 24 22 21 42 42 H 0.96701 * 113.99665 * 179.97438 * 25 24 22 43 43 H 1.07996 * 119.94763 * 179.74685 * 26 12 11 44 44 H 1.08002 * 120.05427 * 180.23154 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0076 -1.2144 0.0005 8 1 3.0484 -1.2369 0.2877 9 6 1.3531 -2.4071 -0.3742 10 6 1.8266 -3.6494 0.0921 11 6 1.1907 -4.7989 -0.2722 12 6 0.0693 -4.7464 -1.1087 13 6 -0.6154 -5.9942 -1.5008 14 8 -0.2050 -7.0654 -1.0976 15 7 -1.6949 -5.9461 -2.3064 16 6 -2.3740 -7.1843 -2.6959 17 1 -1.6388 -7.9807 -2.8127 18 6 -3.3818 -7.5756 -1.6133 19 6 -4.0906 -8.8691 -2.0198 20 6 -4.8238 -8.6541 -3.3453 21 6 -3.8159 -8.2629 -4.4280 22 6 -3.1071 -6.9693 -4.0215 23 1 -3.8425 -6.1733 -3.9049 24 6 -2.0997 -6.5778 -5.1044 25 8 -2.7964 -6.2638 -6.3119 26 6 -0.4015 -3.5145 -1.5794 27 6 0.2246 -2.3594 -1.2162 28 1 -0.4850 0.8400 -0.0004 29 1 2.6919 -3.6910 0.7369 30 1 1.5531 -5.7517 0.0844 31 1 -2.0221 -5.0916 -2.6284 32 1 -4.1170 -6.7793 -1.4964 33 1 -2.8595 -7.7292 -0.6690 34 1 -3.3552 -9.6652 -2.1362 35 1 -4.8089 -9.1475 -1.2487 36 1 -5.3291 -9.5755 -3.6346 37 1 -5.5591 -7.8579 -3.2288 38 1 -3.0806 -9.0589 -4.5445 39 1 -4.3383 -8.1092 -5.3722 40 1 -1.5324 -5.7072 -4.7753 41 1 -1.4179 -7.4091 -5.2840 42 1 -2.2189 -6.0059 -7.0435 43 1 -1.2644 -3.4792 -2.2278 44 1 -0.1415 -1.4094 -1.5767 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270320348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:10 Heat of formation + Delta-G solvation = -117.558734 kcal Electronic energy + Delta-G solvation = -24571.984082 eV Core-core repulsion = 21065.504251 eV Total energy + Delta-G solvation = -3506.479830 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.24291 -39.75412 -38.66888 -37.26764 -35.67352 -35.14417 -32.46200 -32.15544 -31.30837 -30.32087 -27.68233 -26.38551 -24.29881 -23.05025 -22.75065 -22.12679 -21.34955 -20.73378 -19.37114 -18.71079 -17.94562 -17.38391 -17.00560 -16.15914 -15.92965 -15.76251 -15.74913 -15.45345 -15.10412 -14.89450 -14.61761 -14.49328 -14.05657 -13.86967 -13.67839 -13.58387 -13.32355 -13.18710 -12.85555 -12.69153 -12.62719 -12.38139 -12.23259 -12.04025 -11.79449 -11.55263 -11.38023 -11.37563 -11.23405 -11.11230 -10.89667 -10.61122 -9.99676 -9.58075 -9.40979 -8.79829 -6.48914 0.44365 1.14306 1.38710 1.44190 1.51946 2.12378 2.17774 2.35599 2.78546 3.16019 3.66411 3.71701 3.80224 3.96822 4.14465 4.23114 4.24477 4.30826 4.35825 4.43994 4.46366 4.49545 4.54056 4.62459 4.72105 4.91081 4.93689 5.00972 5.02362 5.11916 5.15473 5.19904 5.20743 5.26604 5.29491 5.39638 5.49949 5.57319 5.65455 5.82269 5.94276 5.98767 6.22277 6.53258 6.70657 6.76651 6.85396 6.88457 7.45337 8.15213 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.003143 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.185017 B = 8907.894746 C = 9459.987351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.475 4.475 8 H 0.085 0.915 9 C 0.102 3.898 10 C -0.254 4.254 11 C -0.033 4.033 12 C -0.294 4.294 13 C 0.574 3.426 14 O -0.603 6.603 15 N -0.722 5.722 16 C 0.157 3.843 17 H 0.068 0.932 18 C -0.126 4.126 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.102 4.102 22 C -0.086 4.086 23 H 0.083 0.917 24 C 0.081 3.919 25 O -0.582 6.582 26 C -0.053 4.053 27 C -0.198 4.198 28 H 0.297 0.703 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.405 0.595 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.042 0.958 41 H 0.047 0.953 42 H 0.396 0.604 43 H 0.121 0.879 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.720 -7.422 -9.693 15.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.183 1.183 7 C -0.502 4.502 8 H 0.103 0.897 9 C 0.099 3.901 10 C -0.273 4.273 11 C -0.052 4.052 12 C -0.298 4.298 13 C 0.368 3.632 14 O -0.487 6.487 15 N -0.373 5.373 16 C 0.052 3.948 17 H 0.086 0.914 18 C -0.165 4.165 19 C -0.151 4.151 20 C -0.153 4.153 21 C -0.140 4.140 22 C -0.105 4.105 23 H 0.101 0.899 24 C 0.003 3.997 25 O -0.390 6.390 26 C -0.072 4.072 27 C -0.217 4.217 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.241 0.759 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.245 0.755 43 H 0.139 0.861 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.191 -8.171 -9.046 15.267 hybrid contribution 0.992 1.238 -0.005 1.587 sum -8.199 -6.933 -9.051 14.043 Atomic orbital electron populations 1.69755 1.09225 1.31703 1.31416 1.26919 0.95543 1.04803 0.90803 0.85161 0.78860 0.74983 0.80289 1.18202 1.18768 1.18329 1.20101 0.98803 0.92263 1.39038 0.89669 1.18122 0.91245 0.92832 0.87891 1.20852 1.05200 0.92781 1.08465 1.20507 0.93526 0.96993 0.94163 1.19198 1.04367 0.92269 1.13993 1.18357 0.79397 0.88422 0.77029 1.90613 1.67912 1.32335 1.57889 1.45896 1.30128 1.10286 1.50980 1.20896 0.93639 0.86541 0.93679 0.91405 1.21882 0.97838 0.99183 0.97582 1.21494 0.99377 0.95993 0.98200 1.21559 0.97640 1.02347 0.93774 1.21457 0.98293 0.95060 0.99152 1.21333 0.97294 1.00281 0.91566 0.89855 1.22130 0.93627 0.98877 0.85086 1.86382 1.39051 1.90856 1.22726 1.20704 0.97687 0.91548 0.97281 1.21005 1.00527 0.97389 1.02772 0.89159 0.87864 0.87999 0.75857 0.91237 0.93954 0.92114 0.90686 0.90135 0.91475 0.91907 0.90462 0.93947 0.93517 0.75466 0.86100 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.98 10.95 21.87 0.24 -37.74 16 2 C 0.04 1.78 5.13 85.35 0.44 2.22 16 3 Si 0.99 34.59 29.60 68.60 2.03 36.62 16 4 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 5 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 6 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 7 C -0.47 -23.94 9.04 23.46 0.21 -23.73 16 8 H 0.09 4.11 7.91 -2.91 -0.02 4.09 16 9 C 0.10 5.31 5.58 -21.28 -0.12 5.19 16 10 C -0.25 -12.60 9.73 22.47 0.22 -12.38 16 11 C -0.03 -1.57 9.52 22.25 0.21 -1.36 16 12 C -0.29 -13.36 5.89 -19.93 -0.12 -13.47 16 13 C 0.57 23.92 7.73 86.72 0.67 24.59 16 14 O -0.60 -28.46 15.99 -4.00 -0.06 -28.52 16 15 N -0.72 -23.03 4.26 -445.59 -1.90 -24.93 16 16 C 0.16 4.25 1.90 44.99 0.09 4.33 16 17 H 0.07 2.11 7.58 -2.38 -0.02 2.09 16 18 C -0.13 -3.23 5.49 30.59 0.17 -3.06 16 19 C -0.11 -2.20 5.92 30.59 0.18 -2.01 16 20 C -0.12 -1.88 5.92 30.60 0.18 -1.70 16 21 C -0.10 -1.85 5.10 30.59 0.16 -1.69 16 22 C -0.09 -1.84 2.00 -10.79 -0.02 -1.87 16 23 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 24 C 0.08 1.73 6.34 71.98 0.46 2.18 16 25 O -0.58 -11.26 13.19 -148.98 -1.97 -13.22 16 26 C -0.05 -2.32 9.47 22.25 0.21 -2.11 16 27 C -0.20 -9.73 8.63 22.47 0.19 -9.53 16 28 H 0.30 12.60 8.29 -92.71 -0.77 11.83 16 29 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 30 H 0.10 4.77 7.63 -2.91 -0.02 4.75 16 31 H 0.40 11.54 6.40 -92.71 -0.59 10.95 16 32 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.08 1.37 7.82 -2.39 -0.02 1.36 16 40 H 0.04 0.98 7.31 -2.39 -0.02 0.97 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.40 4.44 9.12 -74.06 -0.68 3.76 16 43 H 0.12 4.33 6.37 -2.91 -0.02 4.31 16 44 H 0.11 5.65 6.16 -2.91 -0.02 5.63 16 Total: -1.00 -61.81 354.65 1.22 -60.59 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: -0.25 Total: 41.62 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 3.13 Total: -34.41 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -1.66 Total: -62.67 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -2.03 Total: -41.75 kcal Atomic # 14 Polarization: 34.59 SS G_CDS: 2.03 Total: 36.62 kcal Total: -61.81 1.22 -60.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270320348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.970 kcal (2) G-P(sol) polarization free energy of solvation -61.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds