Wall clock time and date at job start Tue Mar 31 2020 08:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86798 * 119.99611 * 2 1 4 4 H 1.48508 * 109.46988 * 275.40326 * 3 2 1 5 5 H 1.48498 * 109.47546 * 35.40243 * 3 2 1 6 6 H 1.48502 * 109.47012 * 155.40724 * 3 2 1 7 7 C 1.40227 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99924 * 342.08267 * 7 2 1 9 9 C 1.41111 * 119.99786 * 161.80024 * 7 2 1 10 10 C 1.40888 * 120.10278 * 329.96171 * 9 7 2 11 11 C 1.36321 * 119.88492 * 179.69257 * 10 9 7 12 12 C 1.40015 * 120.10869 * 0.59707 * 11 10 9 13 13 C 1.47640 * 119.89387 * 179.69344 * 12 11 10 14 14 O 1.21587 * 120.00226 * 179.97438 * 13 12 11 15 15 N 1.34775 * 120.00066 * 359.97438 * 13 12 11 16 16 C 1.46499 * 120.00031 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47337 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.47479 * 180.02562 * 17 16 15 19 19 H 1.09000 * 109.48090 * 304.99528 * 18 17 16 20 20 C 1.53090 * 109.48437 * 184.97583 * 18 17 16 21 21 C 1.53176 * 109.16432 * 182.41882 * 20 18 17 22 22 C 1.53174 * 109.04746 * 56.96239 * 21 20 18 23 23 C 1.53099 * 109.16023 * 303.02444 * 22 21 20 24 24 O 1.42897 * 109.41396 * 57.61308 * 23 22 21 25 25 C 1.40014 * 120.20636 * 359.67588 * 12 11 10 26 26 C 1.36308 * 120.10827 * 0.02562 * 25 12 11 27 27 H 0.97004 * 120.00585 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.05494 * 359.96778 * 10 9 7 29 29 H 1.08001 * 119.93972 * 180.29841 * 11 10 9 30 30 H 0.97001 * 120.00420 * 0.02562 * 15 13 12 31 31 H 1.09013 * 109.47017 * 299.99829 * 16 15 13 32 32 H 1.08996 * 109.47423 * 60.00017 * 16 15 13 33 33 H 1.09007 * 109.46827 * 299.99304 * 17 16 15 34 34 H 1.09002 * 109.47523 * 59.99494 * 17 16 15 35 35 H 1.09003 * 109.52100 * 302.31266 * 20 18 17 36 36 H 1.08998 * 109.52847 * 62.49717 * 20 18 17 37 37 H 1.09002 * 109.53506 * 297.09114 * 21 20 18 38 38 H 1.09008 * 109.61891 * 176.87767 * 21 20 18 39 39 H 1.09000 * 109.52661 * 183.12370 * 22 21 20 40 40 H 1.09001 * 109.57872 * 62.95748 * 22 21 20 41 41 H 1.08997 * 109.48376 * 297.62811 * 23 22 21 42 42 H 1.08999 * 109.47743 * 177.59150 * 23 22 21 43 43 H 1.08004 * 119.94165 * 180.02562 * 25 12 11 44 44 H 1.08007 * 120.05238 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.3736 2.1124 -1.3939 5 1 1.4995 2.6171 0.8111 6 1 3.5904 1.4100 0.5827 7 6 2.0076 -1.2144 0.0005 8 1 1.5069 -2.1269 0.2887 9 6 3.3658 -1.2450 -0.3811 10 6 3.8580 -0.3140 -1.3171 11 6 5.1722 -0.3437 -1.6779 12 6 6.0296 -1.3051 -1.1295 13 6 7.4507 -1.3372 -1.5287 14 8 8.1971 -2.1710 -1.0534 15 7 7.9205 -0.4422 -2.4202 16 6 9.3304 -0.4744 -2.8168 17 6 9.6006 0.6391 -3.8306 18 6 11.0729 0.6052 -4.2454 19 1 11.7022 0.6641 -3.3573 20 6 11.3725 1.7934 -5.1630 21 6 12.8319 1.7187 -5.6221 22 6 13.0696 0.3738 -6.3158 23 6 12.7046 -0.7594 -5.3532 24 8 11.3441 -0.6131 -4.9414 25 6 5.5437 -2.2360 -0.2033 26 6 4.2325 -2.2104 0.1682 27 1 -0.4851 0.8400 -0.0004 28 1 3.1961 0.4246 -1.7445 29 1 5.5515 0.3726 -2.3917 30 1 7.3252 0.2232 -2.7992 31 1 9.9585 -0.3256 -1.9383 32 1 9.5591 -1.4400 -3.2677 33 1 8.9726 0.4908 -4.7092 34 1 9.3720 1.6047 -3.3795 35 1 10.7152 1.7574 -6.0318 36 1 11.2086 2.7239 -4.6195 37 1 13.4907 1.8048 -4.7580 38 1 13.0380 2.5303 -6.3200 39 1 14.1194 0.2892 -6.5966 40 1 12.4473 0.3082 -7.2083 41 1 13.3552 -0.7182 -4.4797 42 1 12.8311 -1.7182 -5.8561 43 1 6.2090 -2.9756 0.2174 44 1 3.8587 -2.9286 0.8830 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272556205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:40 Heat of formation + Delta-G solvation = -91.207677 kcal Electronic energy + Delta-G solvation = -23715.536386 eV Core-core repulsion = 20210.199224 eV Total energy + Delta-G solvation = -3505.337163 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.81806 -39.12585 -37.35639 -35.15720 -33.93194 -33.83263 -32.68417 -30.79365 -29.97891 -28.93585 -26.11600 -24.98836 -23.70289 -21.94618 -21.52479 -21.27107 -20.56900 -19.63913 -17.61108 -17.10768 -16.76729 -16.38490 -15.62182 -15.30751 -14.97406 -14.84248 -14.70318 -14.14752 -13.96567 -13.71970 -13.57376 -13.33348 -13.00544 -12.85473 -12.62456 -12.48167 -12.16422 -11.91624 -11.82379 -11.56209 -11.42186 -11.23488 -11.04727 -10.98603 -10.86218 -10.57592 -10.38205 -10.26642 -9.73645 -9.69837 -9.33330 -9.06061 -8.63915 -7.94111 -7.71979 -7.20757 -4.71335 2.02924 2.68280 2.94763 3.08460 3.17939 3.48499 3.69831 3.71447 3.81954 4.40631 4.44229 4.49307 4.50524 4.59104 4.84746 4.98809 5.04033 5.09707 5.20775 5.31140 5.34194 5.40373 5.44672 5.58011 5.59830 5.66431 5.73699 5.79747 5.82355 5.92042 6.03397 6.05337 6.20009 6.45021 6.63426 6.74958 6.89660 6.98472 6.99821 7.25620 7.38917 7.55304 7.69517 7.95150 8.12172 8.14238 8.46429 8.56021 8.98499 9.79191 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.026185 B = 0.002591 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.071280 B =10803.865459 C =11590.454196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.081 3.919 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.241 1.241 7 C -0.426 4.426 8 H 0.096 0.904 9 C 0.106 3.894 10 C -0.248 4.248 11 C -0.036 4.036 12 C -0.283 4.283 13 C 0.571 3.429 14 O -0.571 6.571 15 N -0.743 5.743 16 C 0.126 3.874 17 C -0.124 4.124 18 C 0.095 3.905 19 H 0.061 0.939 20 C -0.150 4.150 21 C -0.123 4.123 22 C -0.157 4.157 23 C 0.060 3.940 24 O -0.375 6.375 25 C -0.018 4.018 26 C -0.221 4.221 27 H 0.291 0.709 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.396 0.604 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.189 6.964 -10.352 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.141 4.141 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.164 1.164 7 C -0.452 4.452 8 H 0.114 0.886 9 C 0.103 3.897 10 C -0.267 4.267 11 C -0.056 4.056 12 C -0.287 4.287 13 C 0.365 3.635 14 O -0.453 6.453 15 N -0.396 5.396 16 C 0.002 3.998 17 C -0.162 4.162 18 C 0.036 3.964 19 H 0.079 0.921 20 C -0.188 4.188 21 C -0.160 4.160 22 C -0.195 4.195 23 C -0.017 4.017 24 O -0.294 6.294 25 C -0.037 4.037 26 C -0.240 4.240 27 H 0.101 0.899 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.230 0.770 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.125 0.875 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 19.292 6.316 -10.032 22.643 hybrid contribution 0.086 1.359 -0.295 1.393 sum 19.378 7.675 -10.327 23.260 Atomic orbital electron populations 1.69608 1.08385 1.31005 1.31974 1.26368 0.94802 1.02322 0.90586 0.86222 0.81479 0.79009 0.79103 1.19293 1.21539 1.16363 1.19748 0.93136 0.96210 1.36135 0.88588 1.17865 0.92835 0.90471 0.88560 1.20705 0.95582 1.05537 1.04903 1.20420 0.93603 0.95266 0.96262 1.18940 0.91906 1.06282 1.11576 1.18494 0.88207 0.79481 0.77294 1.90649 1.59622 1.38625 1.56356 1.45912 1.10557 1.36312 1.46838 1.21138 0.82761 0.99058 0.96803 1.21834 0.94970 0.99570 0.99844 1.22015 0.96131 0.84462 0.93757 0.92118 1.22211 0.97118 0.98799 1.00688 1.21586 0.96505 0.97447 1.00505 1.22204 1.02008 0.95614 0.99677 1.22556 0.83496 0.98657 0.96949 1.87991 1.27060 1.38740 1.75583 1.20461 0.95019 0.94996 0.93235 1.20743 0.93034 1.04692 1.05573 0.89871 0.87875 0.88798 0.76955 0.92316 0.91150 0.90327 0.89919 0.90865 0.90750 0.91835 0.91489 0.91019 0.91032 0.93236 0.88866 0.87526 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.64 13.92 55.56 0.77 -18.87 16 2 C 0.08 2.00 5.40 -17.31 -0.09 1.91 16 3 Si 0.92 19.49 24.52 -169.99 -4.17 15.32 16 4 H -0.27 -5.44 6.71 56.52 0.38 -5.06 16 5 H -0.29 -5.91 7.11 56.52 0.40 -5.50 16 6 H -0.24 -5.30 6.87 56.52 0.39 -4.92 16 7 C -0.43 -10.90 9.56 -37.75 -0.36 -11.26 16 8 H 0.10 2.56 8.06 -52.49 -0.42 2.14 16 9 C 0.11 2.60 5.10 -106.80 -0.55 2.06 16 10 C -0.25 -5.68 7.11 -39.27 -0.28 -5.96 16 11 C -0.04 -0.76 9.47 -39.61 -0.38 -1.13 16 12 C -0.28 -6.16 5.89 -104.73 -0.62 -6.78 16 13 C 0.57 11.81 7.76 -12.42 -0.10 11.71 16 14 O -0.57 -13.41 16.32 5.29 0.09 -13.33 16 15 N -0.74 -11.96 5.50 -61.31 -0.34 -12.30 16 16 C 0.13 1.75 5.57 -4.04 -0.02 1.73 16 17 C -0.12 -1.25 5.04 -26.73 -0.13 -1.39 16 18 C 0.09 0.89 2.64 -26.69 -0.07 0.82 16 19 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 20 C -0.15 -1.13 5.42 -26.59 -0.14 -1.27 16 21 C -0.12 -0.81 6.03 -26.55 -0.16 -0.97 16 22 C -0.16 -1.05 6.14 -26.59 -0.16 -1.22 16 23 C 0.06 0.49 6.84 37.21 0.25 0.75 16 24 O -0.37 -4.14 9.94 -35.23 -0.35 -4.49 16 25 C -0.02 -0.40 9.52 -39.61 -0.38 -0.78 16 26 C -0.22 -5.13 9.73 -39.27 -0.38 -5.52 16 27 H 0.29 6.49 8.29 -40.82 -0.34 6.16 16 28 H 0.10 2.30 4.75 -52.49 -0.25 2.05 16 29 H 0.09 1.59 6.37 -52.49 -0.33 1.25 16 30 H 0.40 5.48 6.47 -40.82 -0.26 5.21 16 31 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.07 1.10 7.82 -51.93 -0.41 0.70 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.11 2.32 7.63 -52.48 -0.40 1.92 16 44 H 0.11 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -29.23 353.30 -8.98 -38.22 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.74 Total: 7.42 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -3.57 Total: -17.29 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.44 Total: -31.17 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.26 Total: -17.82 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.17 Total: 15.32 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.23 -8.98 -38.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272556205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.991 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds