Wall clock time and date at job start Tue Mar 31 2020 08:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86797 * 119.99952 * 2 1 4 4 H 1.48496 * 109.47366 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47230 * 120.00557 * 3 2 1 6 6 H 1.48498 * 109.47255 * 240.00350 * 3 2 1 7 7 C 1.40226 * 120.00490 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00794 * 162.26634 * 7 2 1 9 9 C 1.41117 * 119.99651 * 342.27108 * 7 2 1 10 10 C 1.40888 * 120.10099 * 335.19497 * 9 7 2 11 11 C 1.36315 * 119.89191 * 179.68872 * 10 9 7 12 12 C 1.40018 * 120.10709 * 0.61140 * 11 10 9 13 13 C 1.47634 * 119.89860 * 179.68783 * 12 11 10 14 14 O 1.21594 * 119.99913 * 179.97438 * 13 12 11 15 15 N 1.34770 * 119.99998 * 359.97438 * 13 12 11 16 16 C 1.46510 * 120.00116 * 180.02562 * 15 13 12 17 17 H 1.09000 * 110.01224 * 325.05737 * 16 15 13 18 18 C 1.53866 * 110.03473 * 86.45042 * 16 15 13 19 19 C 1.54264 * 106.60230 * 119.28792 * 18 16 15 20 20 C 1.54892 * 104.19202 * 23.60548 * 19 18 16 21 21 C 1.54259 * 110.03177 * 203.61878 * 16 15 13 22 22 H 1.09000 * 110.49089 * 335.78225 * 21 16 15 23 23 C 1.52998 * 110.49083 * 98.42259 * 21 16 15 24 24 C 1.52993 * 109.47709 * 184.99729 * 23 21 16 25 25 O 1.42898 * 109.47343 * 179.97438 * 24 23 21 26 26 C 1.40017 * 120.20374 * 359.66389 * 12 11 10 27 27 C 1.36319 * 120.11034 * 0.02635 * 26 12 11 28 28 H 0.96997 * 119.99373 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.05566 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.95085 * 180.31519 * 11 10 9 31 31 H 0.97001 * 120.00486 * 359.97438 * 15 13 12 32 32 H 1.09003 * 110.03398 * 238.57195 * 18 16 15 33 33 H 1.08999 * 110.03321 * 0.02562 * 18 16 15 34 34 H 1.08998 * 110.48936 * 142.28484 * 19 18 16 35 35 H 1.09002 * 110.48541 * 264.93510 * 19 18 16 36 36 H 1.09002 * 110.75189 * 80.37846 * 20 19 18 37 37 H 1.09004 * 110.75298 * 203.74095 * 20 19 18 38 38 H 1.09003 * 109.47108 * 305.00241 * 23 21 16 39 39 H 1.09004 * 109.47223 * 64.99751 * 23 21 16 40 40 H 1.08998 * 109.47579 * 300.00110 * 24 23 21 41 41 H 1.09004 * 109.46981 * 60.00244 * 24 23 21 42 42 H 0.96700 * 113.99932 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.94546 * 179.97438 * 26 12 11 44 44 H 1.08001 * 120.05466 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 1.2755 2.7464 0.0006 5 1 3.0943 1.6964 1.2124 6 1 3.0942 1.6965 -1.2125 7 6 2.0077 -1.2143 -0.0005 8 1 3.0492 -1.2365 -0.2854 9 6 1.3524 -2.4076 0.3711 10 6 0.2237 -2.3612 1.2130 11 6 -0.4098 -3.5159 1.5641 12 6 0.0671 -4.7478 1.1000 13 6 -0.6185 -5.9962 1.4887 14 8 -0.2062 -7.0670 1.0863 15 7 -1.7013 -5.9490 2.2897 16 6 -2.3814 -7.1878 2.6760 17 1 -2.3473 -7.9038 1.8548 18 6 -1.7144 -7.7875 3.9262 19 6 -2.7969 -7.8330 5.0244 20 6 -4.1327 -7.8480 4.2405 21 6 -3.8459 -6.8897 3.0580 22 1 -3.9544 -5.8519 3.3731 23 6 -4.7783 -7.1942 1.8838 24 6 -6.2050 -6.7744 2.2431 25 8 -7.0756 -7.0583 1.1461 26 6 1.1919 -4.7994 0.2678 27 6 1.8284 -3.6494 -0.0939 28 1 -0.4849 0.8401 0.0004 29 1 -0.1423 -1.4118 1.5751 30 1 -1.2782 -3.4811 2.2053 31 1 -2.0301 -5.0948 2.6111 32 1 -1.3573 -8.7949 3.7120 33 1 -0.8850 -7.1566 4.2459 34 1 -2.6955 -8.7383 5.6228 35 1 -2.7358 -6.9475 5.6570 36 1 -4.3570 -8.8515 3.8788 37 1 -4.9469 -7.4676 4.8574 38 1 -4.4475 -6.6416 1.0043 39 1 -4.7569 -8.2630 1.6705 40 1 -6.5358 -7.3270 3.1224 41 1 -6.2264 -5.7057 2.4563 42 1 -7.9986 -6.8170 1.3039 43 1 1.5565 -5.7519 -0.0875 44 1 2.6962 -3.6903 -0.7355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275097828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:29 Heat of formation + Delta-G solvation = -97.701842 kcal Electronic energy + Delta-G solvation = -24187.272040 eV Core-core repulsion = 20681.653269 eV Total energy + Delta-G solvation = -3505.618771 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.73449 -38.24399 -37.08991 -36.63567 -33.86215 -33.24509 -32.17326 -30.24921 -29.43549 -27.67859 -26.94395 -25.58959 -22.68590 -21.98134 -20.97543 -20.68640 -19.99511 -19.24232 -17.62350 -17.50993 -16.73375 -16.14826 -15.51071 -15.42055 -14.98464 -14.49411 -14.05902 -13.99340 -13.80596 -13.51748 -13.34166 -13.20910 -12.73841 -12.42317 -12.09818 -11.99052 -11.70544 -11.59726 -11.38375 -11.28384 -11.21145 -11.11575 -10.97475 -10.80324 -10.73210 -10.63196 -10.51574 -10.10852 -10.04913 -9.55047 -9.34826 -8.92304 -8.54175 -7.71440 -7.53513 -7.03231 -4.60003 2.24943 2.92525 2.94106 2.98274 3.04148 3.73790 3.78331 3.87929 3.98856 4.45160 4.54384 4.64129 4.76044 4.96002 5.06616 5.25247 5.33668 5.38441 5.46963 5.52081 5.55270 5.58537 5.66061 5.77095 5.89801 5.96555 6.00499 6.06039 6.08902 6.21716 6.29625 6.32842 6.38726 6.77262 6.83090 6.99265 7.11415 7.14540 7.42234 7.44020 7.66524 7.80102 7.86307 8.07688 8.27927 8.40108 8.63486 8.75849 9.11998 9.88836 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.003091 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.410078 B = 9057.069350 C = 9809.074039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.276 1.276 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.444 4.444 8 H 0.084 0.916 9 C 0.129 3.871 10 C -0.179 4.179 11 C -0.062 4.062 12 C -0.284 4.284 13 C 0.572 3.428 14 O -0.575 6.575 15 N -0.736 5.736 16 C 0.151 3.849 17 H 0.088 0.912 18 C -0.135 4.135 19 C -0.124 4.124 20 C -0.119 4.119 21 C -0.095 4.095 22 H 0.082 0.918 23 C -0.113 4.113 24 C 0.077 3.923 25 O -0.576 6.576 26 C -0.022 4.022 27 C -0.239 4.239 28 H 0.287 0.713 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.395 0.605 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.377 0.623 43 H 0.100 0.900 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.924 -6.757 8.753 15.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.201 1.201 5 H -0.185 1.185 6 H -0.187 1.187 7 C -0.472 4.472 8 H 0.102 0.898 9 C 0.126 3.874 10 C -0.198 4.198 11 C -0.082 4.082 12 C -0.289 4.289 13 C 0.367 3.633 14 O -0.457 6.457 15 N -0.388 5.388 16 C 0.045 3.955 17 H 0.106 0.894 18 C -0.174 4.174 19 C -0.161 4.161 20 C -0.157 4.157 21 C -0.114 4.114 22 H 0.100 0.900 23 C -0.151 4.151 24 C -0.001 4.001 25 O -0.381 6.381 26 C -0.041 4.041 27 C -0.259 4.259 28 H 0.098 0.902 29 H 0.138 0.862 30 H 0.106 0.894 31 H 0.231 0.769 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.224 0.776 43 H 0.119 0.881 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.284 -7.570 8.178 15.164 hybrid contribution -0.410 1.488 0.396 1.593 sum -10.694 -6.082 8.574 14.996 Atomic orbital electron populations 1.69739 1.07900 1.30112 1.31813 1.26093 0.94810 1.01853 0.91885 0.86262 0.80204 0.79463 0.80340 1.20059 1.18492 1.18665 1.19819 0.98371 0.91204 1.37775 0.89768 1.17776 0.90398 0.92140 0.87094 1.20971 0.99875 0.96901 1.02037 1.20464 0.97263 0.92606 0.97819 1.18923 1.04295 0.91103 1.14544 1.18586 0.78821 0.89564 0.76362 1.90630 1.66391 1.31764 1.56930 1.46059 1.31414 1.08570 1.52752 1.21450 0.89518 0.87610 0.96914 0.89415 1.22596 0.98363 1.01606 0.94852 1.22352 0.94577 1.01662 0.97539 1.22574 0.97487 0.99458 0.96140 1.22196 0.93943 1.00336 0.94974 0.90019 1.21552 0.92319 1.02585 0.98599 1.22224 0.90638 0.98772 0.88464 1.86502 1.22182 1.87510 1.41875 1.20365 0.92960 0.97119 0.93678 1.20719 1.04545 0.92673 1.07947 0.90205 0.86249 0.89407 0.76914 0.91421 0.91087 0.91722 0.91630 0.91078 0.91468 0.90757 0.91006 0.93683 0.93691 0.77629 0.88147 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.51 10.96 55.56 0.61 -17.90 16 2 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 3 Si 0.91 17.27 29.60 -169.99 -5.03 12.24 16 4 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.44 -11.08 9.04 -37.74 -0.34 -11.42 16 8 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 9 C 0.13 3.30 5.57 -106.80 -0.60 2.70 16 10 C -0.18 -4.37 8.63 -39.27 -0.34 -4.71 16 11 C -0.06 -1.38 9.47 -39.61 -0.38 -1.76 16 12 C -0.28 -6.52 5.89 -104.73 -0.62 -7.14 16 13 C 0.57 12.17 7.75 -12.43 -0.10 12.08 16 14 O -0.58 -13.75 16.00 5.28 0.08 -13.66 16 15 N -0.74 -12.20 4.94 -53.73 -0.27 -12.46 16 16 C 0.15 2.11 2.79 -66.82 -0.19 1.92 16 17 H 0.09 1.41 7.30 -51.93 -0.38 1.03 16 18 C -0.14 -1.73 6.58 -25.62 -0.17 -1.90 16 19 C -0.12 -1.19 6.83 -25.07 -0.17 -1.36 16 20 C -0.12 -1.05 5.67 -24.74 -0.14 -1.19 16 21 C -0.10 -1.02 2.55 -88.97 -0.23 -1.24 16 22 H 0.08 0.83 7.73 -51.93 -0.40 0.43 16 23 C -0.11 -1.27 4.93 -26.74 -0.13 -1.40 16 24 C 0.08 0.72 6.93 37.15 0.26 0.98 16 25 O -0.58 -6.02 13.66 -35.23 -0.48 -6.50 16 26 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 27 C -0.24 -5.84 9.73 -39.27 -0.38 -6.22 16 28 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 29 H 0.12 2.96 6.16 -52.49 -0.32 2.63 16 30 H 0.09 1.64 6.37 -52.49 -0.33 1.31 16 31 H 0.40 5.90 6.34 -40.82 -0.26 5.64 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.61 7.97 -51.93 -0.41 0.20 16 37 H 0.07 0.49 8.06 -51.93 -0.42 0.08 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.82 8.02 -51.93 -0.42 0.40 16 40 H 0.04 0.35 7.55 -51.93 -0.39 -0.04 16 41 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.38 2.10 9.12 45.56 0.42 2.51 16 43 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 44 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 358.66 15.07 5.40 5.40 Total: -1.00 -29.70 358.66 -9.48 -39.18 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -5.82 Total: 13.61 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -3.98 Total: -19.91 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 0.34 Total: -30.36 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.40 Total: -20.17 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.70 -9.48 -39.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275097828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.524 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds