Wall clock time and date at job start Tue Mar 31 2020 08:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86797 * 119.99952 * 2 1 4 4 H 1.48496 * 109.47366 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47230 * 120.00557 * 3 2 1 6 6 H 1.48498 * 109.47255 * 240.00350 * 3 2 1 7 7 C 1.40226 * 120.00490 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00794 * 162.26634 * 7 2 1 9 9 C 1.41117 * 119.99651 * 342.27108 * 7 2 1 10 10 C 1.40888 * 120.10099 * 335.19497 * 9 7 2 11 11 C 1.36315 * 119.89191 * 179.68872 * 10 9 7 12 12 C 1.40018 * 120.10709 * 0.61140 * 11 10 9 13 13 C 1.47634 * 119.89860 * 179.68783 * 12 11 10 14 14 O 1.21594 * 119.99913 * 179.97438 * 13 12 11 15 15 N 1.34770 * 119.99998 * 359.97438 * 13 12 11 16 16 C 1.46510 * 120.00116 * 180.02562 * 15 13 12 17 17 H 1.09000 * 110.01224 * 325.05737 * 16 15 13 18 18 C 1.53866 * 110.03473 * 86.45042 * 16 15 13 19 19 C 1.54264 * 106.60230 * 119.28792 * 18 16 15 20 20 C 1.54892 * 104.19202 * 23.60548 * 19 18 16 21 21 C 1.54259 * 110.03177 * 203.61878 * 16 15 13 22 22 H 1.09000 * 110.49089 * 335.78225 * 21 16 15 23 23 C 1.52998 * 110.49083 * 98.42259 * 21 16 15 24 24 C 1.52993 * 109.47709 * 184.99729 * 23 21 16 25 25 O 1.42898 * 109.47343 * 179.97438 * 24 23 21 26 26 C 1.40017 * 120.20374 * 359.66389 * 12 11 10 27 27 C 1.36319 * 120.11034 * 0.02635 * 26 12 11 28 28 H 0.96997 * 119.99373 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.05566 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.95085 * 180.31519 * 11 10 9 31 31 H 0.97001 * 120.00486 * 359.97438 * 15 13 12 32 32 H 1.09003 * 110.03398 * 238.57195 * 18 16 15 33 33 H 1.08999 * 110.03321 * 0.02562 * 18 16 15 34 34 H 1.08998 * 110.48936 * 142.28484 * 19 18 16 35 35 H 1.09002 * 110.48541 * 264.93510 * 19 18 16 36 36 H 1.09002 * 110.75189 * 80.37846 * 20 19 18 37 37 H 1.09004 * 110.75298 * 203.74095 * 20 19 18 38 38 H 1.09003 * 109.47108 * 305.00241 * 23 21 16 39 39 H 1.09004 * 109.47223 * 64.99751 * 23 21 16 40 40 H 1.08998 * 109.47579 * 300.00110 * 24 23 21 41 41 H 1.09004 * 109.46981 * 60.00244 * 24 23 21 42 42 H 0.96700 * 113.99932 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.94546 * 179.97438 * 26 12 11 44 44 H 1.08001 * 120.05466 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 1.2755 2.7464 0.0006 5 1 3.0943 1.6964 1.2124 6 1 3.0942 1.6965 -1.2125 7 6 2.0077 -1.2143 -0.0005 8 1 3.0492 -1.2365 -0.2854 9 6 1.3524 -2.4076 0.3711 10 6 0.2237 -2.3612 1.2130 11 6 -0.4098 -3.5159 1.5641 12 6 0.0671 -4.7478 1.1000 13 6 -0.6185 -5.9962 1.4887 14 8 -0.2062 -7.0670 1.0863 15 7 -1.7013 -5.9490 2.2897 16 6 -2.3814 -7.1878 2.6760 17 1 -2.3473 -7.9038 1.8548 18 6 -1.7144 -7.7875 3.9262 19 6 -2.7969 -7.8330 5.0244 20 6 -4.1327 -7.8480 4.2405 21 6 -3.8459 -6.8897 3.0580 22 1 -3.9544 -5.8519 3.3731 23 6 -4.7783 -7.1942 1.8838 24 6 -6.2050 -6.7744 2.2431 25 8 -7.0756 -7.0583 1.1461 26 6 1.1919 -4.7994 0.2678 27 6 1.8284 -3.6494 -0.0939 28 1 -0.4849 0.8401 0.0004 29 1 -0.1423 -1.4118 1.5751 30 1 -1.2782 -3.4811 2.2053 31 1 -2.0301 -5.0948 2.6111 32 1 -1.3573 -8.7949 3.7120 33 1 -0.8850 -7.1566 4.2459 34 1 -2.6955 -8.7383 5.6228 35 1 -2.7358 -6.9475 5.6570 36 1 -4.3570 -8.8515 3.8788 37 1 -4.9469 -7.4676 4.8574 38 1 -4.4475 -6.6416 1.0043 39 1 -4.7569 -8.2630 1.6705 40 1 -6.5358 -7.3270 3.1224 41 1 -6.2264 -5.7057 2.4563 42 1 -7.9986 -6.8170 1.3039 43 1 1.5565 -5.7519 -0.0875 44 1 2.6962 -3.6903 -0.7355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275097828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:28 Heat of formation + Delta-G solvation = -116.438186 kcal Electronic energy + Delta-G solvation = -24188.084509 eV Core-core repulsion = 20681.653269 eV Total energy + Delta-G solvation = -3506.431240 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.12026 -39.63390 -38.63815 -37.59218 -35.67260 -34.68654 -33.04622 -32.01332 -31.30486 -28.91765 -27.87221 -27.20089 -23.97239 -23.23321 -22.79113 -21.86872 -21.12788 -20.62573 -19.37014 -18.61129 -18.01401 -17.51669 -17.11740 -16.28355 -16.12036 -15.85605 -15.74030 -15.30773 -15.06288 -14.88427 -14.78056 -14.39619 -14.18007 -13.87163 -13.70857 -13.38277 -13.19052 -12.89641 -12.82766 -12.60920 -12.48295 -12.35477 -12.12672 -11.97600 -11.79338 -11.64762 -11.56972 -11.45078 -11.36166 -11.12220 -10.82513 -10.67230 -10.00597 -9.58220 -9.40805 -8.79672 -6.49000 0.44285 1.13964 1.38863 1.44463 1.52121 2.12503 2.18042 2.40740 2.78458 3.21330 3.56341 3.68346 3.74938 3.91960 4.15038 4.24311 4.29193 4.33660 4.43226 4.44944 4.47553 4.57263 4.60606 4.62522 4.73885 4.76589 4.91047 5.01671 5.02041 5.07536 5.15139 5.15745 5.20156 5.25873 5.29673 5.31125 5.48171 5.57443 5.71770 5.82382 5.94424 5.98597 6.22044 6.53011 6.73032 6.76563 6.88432 6.93436 7.46901 8.15529 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.003091 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.410078 B = 9057.069350 C = 9809.074039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.039 3.961 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.259 1.259 7 C -0.475 4.475 8 H 0.085 0.915 9 C 0.102 3.898 10 C -0.197 4.197 11 C -0.053 4.053 12 C -0.295 4.295 13 C 0.571 3.429 14 O -0.607 6.607 15 N -0.717 5.717 16 C 0.143 3.857 17 H 0.061 0.939 18 C -0.136 4.136 19 C -0.115 4.115 20 C -0.110 4.110 21 C -0.085 4.085 22 H 0.094 0.906 23 C -0.113 4.113 24 C 0.079 3.921 25 O -0.601 6.601 26 C -0.034 4.034 27 C -0.254 4.254 28 H 0.297 0.703 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.406 0.594 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.397 0.603 43 H 0.100 0.900 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.788 -5.928 10.687 17.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.180 4.180 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.184 1.184 7 C -0.502 4.502 8 H 0.103 0.897 9 C 0.099 3.901 10 C -0.217 4.217 11 C -0.072 4.072 12 C -0.299 4.299 13 C 0.364 3.636 14 O -0.492 6.492 15 N -0.369 5.369 16 C 0.038 3.962 17 H 0.079 0.921 18 C -0.174 4.174 19 C -0.153 4.153 20 C -0.147 4.147 21 C -0.104 4.104 22 H 0.112 0.888 23 C -0.151 4.151 24 C 0.001 3.999 25 O -0.410 6.410 26 C -0.053 4.053 27 C -0.274 4.274 28 H 0.109 0.891 29 H 0.133 0.867 30 H 0.142 0.858 31 H 0.243 0.757 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.247 0.753 43 H 0.118 0.882 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.205 -6.747 10.140 17.242 hybrid contribution 0.116 1.143 -0.237 1.173 sum -12.089 -5.603 9.903 16.601 Atomic orbital electron populations 1.69758 1.09220 1.31705 1.31433 1.26924 0.95558 1.04798 0.90769 0.85151 0.78855 0.74947 0.80273 1.18684 1.18205 1.18367 1.20101 0.98743 0.92246 1.39142 0.89697 1.18127 0.91312 0.92789 0.87872 1.21016 1.00414 0.97430 1.02805 1.20717 0.97713 0.91446 0.97289 1.19217 1.04172 0.92325 1.14191 1.18421 0.79794 0.88420 0.76941 1.90608 1.67623 1.32548 1.58427 1.45926 1.29780 1.10238 1.50935 1.21700 0.91915 0.85905 0.96671 0.92062 1.22557 0.98945 1.00549 0.95396 1.22327 0.93436 1.02946 0.96559 1.22573 0.97834 0.99209 0.95117 1.22139 0.90964 1.01726 0.95566 0.88753 1.21521 0.94124 1.01737 0.97687 1.22222 0.89132 0.99644 0.88855 1.86446 1.23946 1.87835 1.42803 1.20504 0.93630 0.96961 0.94218 1.20855 1.05134 0.92804 1.08572 0.89138 0.86730 0.85849 0.75701 0.92162 0.92900 0.90178 0.90671 0.90687 0.88634 0.93818 0.91697 0.91161 0.92793 0.75263 0.88182 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.12 10.96 21.87 0.24 -37.88 16 2 C 0.04 1.80 5.14 85.35 0.44 2.24 16 3 Si 0.99 34.75 29.60 68.60 2.03 36.78 16 4 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 5 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 6 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 7 C -0.48 -24.17 9.04 23.46 0.21 -23.96 16 8 H 0.08 4.14 7.91 -2.91 -0.02 4.12 16 9 C 0.10 5.37 5.57 -21.28 -0.12 5.25 16 10 C -0.20 -9.80 8.63 22.47 0.19 -9.61 16 11 C -0.05 -2.33 9.47 22.25 0.21 -2.12 16 12 C -0.29 -13.74 5.89 -19.93 -0.12 -13.86 16 13 C 0.57 24.67 7.75 86.73 0.67 25.34 16 14 O -0.61 -29.92 16.00 -4.01 -0.06 -29.98 16 15 N -0.72 -23.50 4.94 -442.17 -2.18 -25.69 16 16 C 0.14 3.93 2.79 45.71 0.13 4.06 16 17 H 0.06 2.03 7.30 -2.39 -0.02 2.01 16 18 C -0.14 -3.35 6.58 31.31 0.21 -3.15 16 19 C -0.12 -1.87 6.83 31.67 0.22 -1.65 16 20 C -0.11 -1.53 5.67 31.88 0.18 -1.35 16 21 C -0.08 -1.63 2.55 -9.72 -0.02 -1.65 16 22 H 0.09 1.62 7.73 -2.39 -0.02 1.60 16 23 C -0.11 -2.41 4.93 30.59 0.15 -2.26 16 24 C 0.08 1.28 6.93 71.98 0.50 1.77 16 25 O -0.60 -11.49 13.66 -148.98 -2.04 -13.53 16 26 C -0.03 -1.67 9.52 22.25 0.21 -1.46 16 27 C -0.25 -12.88 9.73 22.47 0.22 -12.66 16 28 H 0.30 12.62 8.29 -92.71 -0.77 11.85 16 29 H 0.11 5.73 6.16 -2.91 -0.02 5.71 16 30 H 0.12 4.42 6.37 -2.91 -0.02 4.40 16 31 H 0.41 11.50 6.34 -92.71 -0.59 10.91 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.49 7.92 -2.39 -0.02 1.48 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.03 7.97 -2.39 -0.02 1.02 16 37 H 0.10 0.90 8.06 -2.38 -0.02 0.88 16 38 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.45 8.02 -2.38 -0.02 1.43 16 40 H 0.07 0.80 7.55 -2.39 -0.02 0.78 16 41 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.40 3.54 9.12 -74.06 -0.68 2.87 16 43 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 44 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -66.37 358.66 1.02 -65.35 By element: Atomic # 1 Polarization: 40.27 SS G_CDS: -0.24 Total: 40.03 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 3.28 Total: -35.08 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -1.95 Total: -63.57 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -2.10 Total: -43.51 kcal Atomic # 14 Polarization: 34.75 SS G_CDS: 2.03 Total: 36.78 kcal Total: -66.37 1.02 -65.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275097828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.092 kcal (2) G-P(sol) polarization free energy of solvation -66.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds