Wall clock time and date at job start Tue Mar 31 2020 08:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48506 * 109.47125 * 239.99665 * 3 2 1 5 5 H 1.48495 * 109.47264 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47238 * 119.99876 * 3 2 1 7 7 C 1.37882 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99936 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99959 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46888 * 180.02562 * 9 7 2 11 11 C 1.46501 * 119.99848 * 90.00385 * 10 9 7 12 12 C 1.50696 * 109.47311 * 89.99915 * 11 10 9 13 13 C 1.34517 * 125.79044 * 90.00131 * 12 11 10 14 14 C 1.41388 * 106.83576 * 180.02562 * 13 12 11 15 15 C 1.34511 * 106.84442 * 359.97438 * 14 13 12 16 16 O 1.34295 * 108.42007 * 0.27361 * 15 14 13 17 17 C 1.34776 * 120.00096 * 269.99833 * 10 9 7 18 18 O 1.21282 * 119.99711 * 359.97438 * 17 10 9 19 19 C 1.50701 * 120.00194 * 180.02562 * 17 10 9 20 20 C 1.52996 * 109.47031 * 179.97438 * 19 17 10 21 21 H 1.09001 * 109.35933 * 304.72422 * 20 19 17 22 22 C 1.50071 * 109.35978 * 64.30990 * 20 19 17 23 23 C 1.29438 * 124.07708 * 137.33615 * 22 20 19 24 24 C 1.50073 * 124.07629 * 359.53287 * 23 22 20 25 25 C 1.53023 * 110.14653 * 17.13019 * 24 23 22 26 26 C 1.53023 * 109.35817 * 184.99636 * 20 19 17 27 27 H 0.97001 * 120.00109 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47188 * 60.00085 * 9 7 2 29 29 H 1.08996 * 109.47340 * 299.99803 * 9 7 2 30 30 H 1.08997 * 109.47237 * 329.99046 * 11 10 9 31 31 H 1.09007 * 109.46942 * 209.99490 * 11 10 9 32 32 H 1.07992 * 126.58259 * 0.02562 * 13 12 11 33 33 H 1.08002 * 126.57184 * 179.97438 * 14 13 12 34 34 H 1.08002 * 125.78644 * 179.97438 * 15 14 13 35 35 H 1.09003 * 109.46760 * 300.00073 * 19 17 10 36 36 H 1.08995 * 109.47219 * 60.00040 * 19 17 10 37 37 H 1.07998 * 117.96005 * 317.31342 * 22 20 19 38 38 H 1.08003 * 117.96173 * 179.51102 * 23 22 20 39 39 H 1.09005 * 109.35296 * 256.92183 * 24 23 22 40 40 H 1.09000 * 109.24588 * 137.26804 * 24 23 22 41 41 H 1.08998 * 109.63862 * 190.88481 * 25 24 23 42 42 H 1.08993 * 109.64272 * 70.24822 * 25 24 23 43 43 H 1.09004 * 109.64269 * 310.04186 * 26 20 19 44 44 H 1.09001 * 109.64436 * 70.46031 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.6780 -4.1689 1.2711 12 6 1.7610 -5.2829 1.7059 13 6 1.8968 -6.5829 1.3881 14 6 0.8241 -7.2689 2.0027 15 6 0.0973 -6.3473 2.6597 16 8 0.6662 -5.1454 2.4717 17 6 2.6419 -4.1254 -1.1648 18 8 2.2482 -3.6653 -2.2157 19 6 3.6207 -5.2712 -1.1636 20 6 3.9528 -5.6598 -2.6056 21 1 3.0300 -5.8808 -3.1420 22 6 4.6551 -4.5175 -3.2795 23 6 5.6866 -4.6532 -4.0497 24 6 6.3305 -5.9708 -4.3683 25 6 5.3789 -7.1191 -4.0257 26 6 4.8478 -6.9010 -2.6032 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5568 0.8903 30 1 2.6852 -3.3869 2.0304 31 1 3.6876 -4.5590 1.1418 32 1 2.6757 -7.0189 0.7803 33 1 0.6263 -8.3296 1.9540 34 1 -0.7953 -6.5404 3.2362 35 1 4.5329 -4.9691 -0.6490 36 1 3.1797 -6.1254 -0.6499 37 1 4.2761 -3.5203 -3.1118 38 1 6.1099 -3.7628 -4.4906 39 1 7.2467 -6.0750 -3.7870 40 1 6.5709 -6.0055 -5.4309 41 1 5.9153 -8.0666 -4.0753 42 1 4.5471 -7.1281 -4.7299 43 1 5.6831 -6.7491 -1.9196 44 1 4.2694 -7.7693 -2.2876 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275257512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:16 Heat of formation + Delta-G solvation = -16.568255 kcal Electronic energy + Delta-G solvation = -25139.767792 eV Core-core repulsion = 21637.667238 eV Total energy + Delta-G solvation = -3502.100555 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.33751 -39.57165 -37.95748 -35.19280 -33.14398 -32.57377 -32.27426 -30.86392 -30.15506 -28.08822 -26.58223 -25.31828 -23.13777 -22.20006 -21.61919 -21.40458 -20.55004 -18.45380 -17.82767 -17.29486 -16.57633 -16.25892 -15.95984 -15.52852 -15.23724 -14.77721 -14.40303 -14.34038 -14.05736 -13.37951 -13.15196 -12.73473 -12.70688 -12.63557 -12.58788 -12.44241 -12.19078 -11.95964 -11.88398 -11.55527 -11.23947 -11.18181 -10.89537 -10.79237 -10.58694 -10.38930 -10.18552 -9.94570 -9.73895 -9.68740 -8.87398 -8.73914 -8.43685 -8.32796 -7.78317 -6.03489 -4.08557 1.90611 2.58326 2.75136 3.15437 3.32275 3.36863 3.38517 3.49557 3.96897 4.44908 4.76310 4.81411 4.85576 4.91913 5.12069 5.14422 5.17844 5.25333 5.31007 5.35310 5.45765 5.54659 5.56383 5.65799 5.74862 5.77037 5.84097 5.89219 5.93462 5.95616 5.96097 6.11285 6.14237 6.28443 6.42684 6.51061 6.66136 6.99035 7.04474 7.23422 7.33865 7.45360 7.51357 7.92139 8.22893 8.34801 8.89516 9.06169 9.56307 11.04766 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009071 B = 0.005776 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.076641 B = 4846.647166 C = 7517.956576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.246 3.754 10 N -0.595 5.595 11 C 0.186 3.814 12 C -0.013 4.013 13 C -0.215 4.215 14 C -0.218 4.218 15 C -0.044 4.044 16 O -0.165 6.165 17 C 0.509 3.491 18 O -0.531 6.531 19 C -0.141 4.141 20 C -0.043 4.043 21 H 0.087 0.913 22 C -0.124 4.124 23 C -0.182 4.182 24 C -0.086 4.086 25 C -0.119 4.119 26 C -0.115 4.115 27 H 0.264 0.736 28 H 0.044 0.956 29 H 0.033 0.967 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.198 0.802 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.624 -16.659 1.038 18.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.076 0.924 9 C 0.128 3.872 10 N -0.326 5.326 11 C 0.061 3.939 12 C -0.065 4.065 13 C -0.235 4.235 14 C -0.237 4.237 15 C -0.112 4.112 16 O -0.060 6.060 17 C 0.296 3.704 18 O -0.407 6.407 19 C -0.181 4.181 20 C -0.061 4.061 21 H 0.105 0.895 22 C -0.142 4.142 23 C -0.200 4.200 24 C -0.123 4.123 25 C -0.157 4.157 26 C -0.153 4.153 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.215 0.785 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.134 0.866 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.129 -15.956 0.581 17.917 hybrid contribution 0.291 0.753 0.075 0.811 sum 8.420 -15.203 0.657 17.392 Atomic orbital electron populations 1.69926 1.06012 1.27104 1.50172 1.24926 0.94851 0.99167 0.95042 0.86571 0.79526 0.82782 0.78606 1.20207 1.21192 1.20219 1.21369 0.93276 0.90576 1.51398 0.92434 1.19310 0.87428 0.81944 0.98564 1.48334 1.46254 1.34696 1.03340 1.19881 0.92966 0.92613 0.88418 1.23345 0.89679 0.96866 0.96601 1.21628 1.02475 0.93077 1.06332 1.21757 0.97964 1.00518 1.03462 1.24012 1.00615 0.82086 1.04531 1.84115 1.34069 1.32567 1.55211 1.20393 0.82219 0.83799 0.83987 1.90668 1.58048 1.61467 1.30560 1.21928 0.99574 0.98234 0.98401 1.19829 0.98752 0.93270 0.94277 0.89539 1.22313 0.95271 1.00208 0.96446 1.21956 0.98822 0.97734 1.01521 1.20400 0.98151 0.92958 1.00807 1.21582 0.99240 0.97745 0.97091 1.21670 0.99241 0.97245 0.97112 0.92665 0.93838 0.94941 0.88113 0.88162 0.83596 0.83828 0.78507 0.89364 0.89109 0.86551 0.88361 0.91484 0.91727 0.92006 0.91767 0.91719 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -14.84 9.39 -34.44 -0.32 -15.17 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.18 16 9 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 10 N -0.59 -12.42 2.44 -176.44 -0.43 -12.85 16 11 C 0.19 3.03 5.74 -5.19 -0.03 3.00 16 12 C -0.01 -0.20 6.90 -35.63 -0.25 -0.45 16 13 C -0.22 -2.91 9.98 -39.70 -0.40 -3.31 16 14 C -0.22 -2.72 10.91 -39.70 -0.43 -3.16 16 15 C -0.04 -0.58 12.09 29.41 0.36 -0.22 16 16 O -0.16 -2.76 10.65 5.71 0.06 -2.70 16 17 C 0.51 10.27 7.30 -10.99 -0.08 10.19 16 18 O -0.53 -12.95 13.82 5.56 0.08 -12.87 16 19 C -0.14 -2.03 3.69 -27.88 -0.10 -2.13 16 20 C -0.04 -0.60 2.12 -92.07 -0.19 -0.79 16 21 H 0.09 1.35 7.96 -51.93 -0.41 0.94 16 22 C -0.12 -1.94 8.41 -35.90 -0.30 -2.25 16 23 C -0.18 -2.45 9.80 -35.90 -0.35 -2.80 16 24 C -0.09 -0.91 6.12 -28.17 -0.17 -1.09 16 25 C -0.12 -1.20 6.01 -26.51 -0.16 -1.36 16 26 C -0.12 -1.22 5.30 -26.51 -0.14 -1.37 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 29 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.10 1.69 8.07 -51.93 -0.42 1.27 16 31 H 0.10 1.27 6.44 -51.92 -0.33 0.93 16 32 H 0.15 1.64 6.17 -52.49 -0.32 1.31 16 33 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.09 1.12 7.40 -51.93 -0.38 0.73 16 36 H 0.09 1.12 5.12 -51.93 -0.27 0.86 16 37 H 0.12 2.22 6.47 -52.49 -0.34 1.88 16 38 H 0.10 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.69 8.12 -51.93 -0.42 0.26 16 43 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -33.37 357.65 -8.52 -41.89 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.63 Total: 3.06 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -2.70 Total: -12.76 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.31 Total: -38.84 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.14 Total: -15.57 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.37 -8.52 -41.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275257512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.320 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds