Wall clock time and date at job start Tue Mar 31 2020 08:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99913 * 2 1 4 4 H 1.48503 * 109.47282 * 269.99943 * 3 2 1 5 5 H 1.48498 * 109.47368 * 30.00148 * 3 2 1 6 6 H 1.48498 * 109.47200 * 150.00580 * 3 2 1 7 7 C 1.37882 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00190 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99603 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.47076 * 180.02562 * 9 7 2 11 11 C 1.46502 * 119.99905 * 270.00468 * 10 9 7 12 12 C 1.50700 * 109.46850 * 269.99661 * 11 10 9 13 13 C 1.34515 * 125.79193 * 89.71795 * 12 11 10 14 14 C 1.41377 * 106.84420 * 179.89250 * 13 12 11 15 15 C 1.34517 * 106.83993 * 0.36505 * 14 13 12 16 16 O 1.34301 * 125.79130 * 270.02498 * 12 11 10 17 17 C 1.34777 * 119.99984 * 89.99625 * 10 9 7 18 18 O 1.21274 * 120.00111 * 0.02562 * 17 10 9 19 19 C 1.50695 * 119.99838 * 180.02562 * 17 10 9 20 20 C 1.53001 * 109.47122 * 180.02562 * 19 17 10 21 21 H 1.09002 * 109.35786 * 55.00047 * 20 19 17 22 22 C 1.50070 * 109.35710 * 295.27638 * 20 19 17 23 23 C 1.29438 * 124.07888 * 222.77289 * 22 20 19 24 24 C 1.50069 * 124.07462 * 0.49959 * 23 22 20 25 25 C 1.53032 * 110.14439 * 342.86538 * 24 23 22 26 26 C 1.53025 * 109.24763 * 174.65701 * 20 19 17 27 27 H 0.97001 * 120.00500 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47553 * 60.00430 * 9 7 2 29 29 H 1.09001 * 109.47841 * 300.00372 * 9 7 2 30 30 H 1.08998 * 109.47271 * 29.98999 * 11 10 9 31 31 H 1.08994 * 109.47260 * 150.00009 * 11 10 9 32 32 H 1.08001 * 126.57699 * 0.02562 * 13 12 11 33 33 H 1.08002 * 126.58264 * 180.16608 * 14 13 12 34 34 H 1.08002 * 125.79011 * 179.79127 * 15 14 13 35 35 H 1.09002 * 109.47078 * 60.00037 * 19 17 10 36 36 H 1.09003 * 109.47181 * 300.00459 * 19 17 10 37 37 H 1.08007 * 117.95895 * 42.80063 * 22 20 19 38 38 H 1.07998 * 117.96732 * 180.51627 * 23 22 20 39 39 H 1.08996 * 109.36487 * 103.06766 * 24 23 22 40 40 H 1.08997 * 109.35721 * 222.79613 * 24 23 22 41 41 H 1.09004 * 109.64219 * 169.12635 * 25 24 23 42 42 H 1.09008 * 109.63781 * 289.53983 * 25 24 23 43 43 H 1.08996 * 109.64098 * 289.25912 * 26 20 19 44 44 H 1.09004 * 109.63983 * 49.88631 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6791 -4.1694 -1.2693 12 6 1.7624 -5.2836 -1.7043 13 6 0.6668 -5.1463 -2.4726 14 6 0.1145 -6.4377 -2.6330 15 6 0.9010 -7.2860 -1.9465 16 8 1.8975 -6.5813 -1.3860 17 6 2.6410 -4.1249 1.1667 18 8 2.2467 -3.6642 2.2169 19 6 3.6207 -5.2699 1.1666 20 6 3.9516 -5.6580 2.6091 21 1 3.0281 -5.8749 3.1459 22 6 4.6614 -4.5189 3.2804 23 6 5.6939 -4.6592 4.0483 24 6 6.3321 -5.9797 4.3661 25 6 5.3740 -7.1235 4.0261 26 6 4.8404 -6.9037 2.6051 27 1 -0.4851 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 2.6868 -3.3878 -2.0289 31 1 3.6885 -4.5594 -1.1390 32 1 0.2840 -4.2262 -2.8890 33 1 -0.7711 -6.6937 -3.1959 34 1 0.7558 -8.3528 -1.8607 35 1 4.5332 -4.9673 0.6529 36 1 3.1808 -6.1245 0.6526 37 1 4.2871 -3.5197 3.1126 38 1 6.1227 -3.7708 4.4879 39 1 7.2464 -6.0890 3.7828 40 1 6.5745 -6.0176 5.4281 41 1 5.9058 -8.0738 4.0751 42 1 4.5456 -7.1304 4.7347 43 1 4.2558 -7.7699 2.2952 44 1 5.6746 -6.7564 1.9191 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275257517.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:20 Heat of formation + Delta-G solvation = -19.193766 kcal Electronic energy + Delta-G solvation = -25143.879613 eV Core-core repulsion = 21641.665207 eV Total energy + Delta-G solvation = -3502.214405 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.32540 -39.52478 -37.93599 -35.19456 -32.91608 -32.74568 -32.23844 -30.84037 -30.12503 -28.15149 -26.47408 -25.31090 -23.13561 -22.16000 -21.49404 -21.47526 -20.47634 -18.46285 -17.79020 -17.22545 -16.54686 -16.27410 -15.95555 -15.52673 -15.26748 -14.82058 -14.38723 -14.13799 -14.03911 -13.48234 -13.02993 -12.74456 -12.62893 -12.58917 -12.53536 -12.35179 -12.21974 -11.91833 -11.89539 -11.51919 -11.31109 -11.20566 -10.88700 -10.76496 -10.60522 -10.36342 -10.19350 -9.92770 -9.72129 -9.65628 -8.85259 -8.71918 -8.45230 -8.30348 -7.78058 -6.05685 -4.10663 1.90177 2.60361 2.82667 3.13934 3.29070 3.36199 3.39575 3.49996 3.99055 4.43575 4.80058 4.84898 4.88432 4.94200 5.12731 5.20853 5.25249 5.29102 5.32793 5.43552 5.48825 5.59160 5.60700 5.69090 5.80430 5.81853 5.91578 5.95859 5.98488 5.99239 6.01221 6.17189 6.18918 6.30624 6.46415 6.54085 6.71657 7.00657 7.02696 7.25223 7.32413 7.44488 7.51504 7.90497 8.21200 8.34488 8.88746 9.07292 9.54657 11.02430 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009109 B = 0.005778 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.075733 B = 4845.051344 C = 7502.759536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.247 3.753 10 N -0.596 5.596 11 C 0.191 3.809 12 C -0.025 4.025 13 C -0.195 4.195 14 C -0.213 4.213 15 C -0.051 4.051 16 O -0.177 6.177 17 C 0.509 3.491 18 O -0.532 6.532 19 C -0.137 4.137 20 C -0.042 4.042 21 H 0.086 0.914 22 C -0.124 4.124 23 C -0.183 4.183 24 C -0.086 4.086 25 C -0.119 4.119 26 C -0.114 4.114 27 H 0.263 0.737 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.197 0.803 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.200 -16.177 -1.414 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.076 0.924 9 C 0.128 3.872 10 N -0.327 5.327 11 C 0.066 3.934 12 C -0.077 4.077 13 C -0.215 4.215 14 C -0.232 4.232 15 C -0.119 4.119 16 O -0.073 6.073 17 C 0.296 3.704 18 O -0.408 6.408 19 C -0.177 4.177 20 C -0.061 4.061 21 H 0.104 0.896 22 C -0.142 4.142 23 C -0.201 4.201 24 C -0.123 4.123 25 C -0.157 4.157 26 C -0.152 4.152 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.133 0.867 31 H 0.102 0.898 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.214 0.786 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.134 0.866 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.051 -15.875 -0.652 17.812 hybrid contribution 0.007 1.060 -0.316 1.106 sum 8.059 -14.815 -0.968 16.893 Atomic orbital electron populations 1.69933 1.05999 1.27016 1.50285 1.24924 0.94845 0.99171 0.95043 0.86516 0.79879 0.83146 0.77997 1.20624 1.21122 1.19893 1.21422 0.93349 0.90575 1.51235 0.92376 1.19300 0.87443 0.81934 0.98550 1.48340 1.46255 1.34719 1.03426 1.19875 0.94050 0.90520 0.88929 1.23330 1.00720 0.82761 1.00841 1.21705 0.96985 0.98864 1.03908 1.21824 1.02792 0.93239 1.05379 1.23928 0.90077 0.97784 1.00122 1.83993 1.44758 1.18763 1.59790 1.20432 0.82200 0.83771 0.83969 1.90661 1.58093 1.61457 1.30633 1.21800 0.99460 0.98205 0.98213 1.19825 0.98689 0.93232 0.94334 0.89604 1.22308 0.95243 1.00201 0.96402 1.21946 0.98842 0.97697 1.01576 1.20396 0.98150 0.92970 1.00777 1.21588 0.99208 0.97741 0.97149 1.21660 0.99261 0.97262 0.97008 0.92714 0.94986 0.93830 0.86733 0.89776 0.83274 0.83809 0.78578 0.89480 0.89010 0.86612 0.88372 0.91496 0.91748 0.92054 0.91801 0.91781 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.25 6.34 5.16 -5.19 -0.03 6.32 16 10 N -0.60 -12.40 2.44 -176.43 -0.43 -12.83 16 11 C 0.19 3.09 5.74 -5.19 -0.03 3.06 16 12 C -0.03 -0.39 6.85 -35.62 -0.24 -0.64 16 13 C -0.19 -3.02 10.81 -39.70 -0.43 -3.45 16 14 C -0.21 -2.82 10.91 -39.70 -0.43 -3.25 16 15 C -0.05 -0.62 12.09 29.42 0.36 -0.27 16 16 O -0.18 -2.56 9.55 5.71 0.05 -2.50 16 17 C 0.51 10.48 7.30 -10.99 -0.08 10.40 16 18 O -0.53 -13.10 13.85 5.56 0.08 -13.02 16 19 C -0.14 -2.09 3.68 -27.88 -0.10 -2.19 16 20 C -0.04 -0.62 2.12 -92.06 -0.20 -0.82 16 21 H 0.09 1.40 7.95 -51.93 -0.41 0.98 16 22 C -0.12 -1.98 8.41 -35.90 -0.30 -2.28 16 23 C -0.18 -2.51 9.80 -35.90 -0.35 -2.86 16 24 C -0.09 -0.94 6.12 -28.17 -0.17 -1.11 16 25 C -0.12 -1.26 6.01 -26.52 -0.16 -1.41 16 26 C -0.11 -1.30 5.30 -26.52 -0.14 -1.44 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 30 H 0.11 1.81 8.07 -51.93 -0.42 1.39 16 31 H 0.08 1.13 6.44 -51.93 -0.33 0.79 16 32 H 0.15 2.31 8.06 -52.49 -0.42 1.89 16 33 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.20 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.09 1.20 7.40 -51.93 -0.38 0.81 16 36 H 0.09 1.29 6.92 -51.93 -0.36 0.93 16 37 H 0.12 2.24 6.51 -52.48 -0.34 1.90 16 38 H 0.10 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.71 8.13 -51.92 -0.42 0.28 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -32.50 361.06 -8.70 -41.21 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.83 Total: 3.90 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -2.73 Total: -13.22 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.31 Total: -38.41 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.13 Total: -15.53 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.50 -8.70 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275257517.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.011 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds