Wall clock time and date at job start Tue Mar 31 2020 08:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 115.54923 * 2 1 4 4 C 1.53002 * 109.47073 * 34.33008 * 3 2 1 5 5 N 1.46503 * 109.46556 * 180.02562 * 4 3 2 6 6 C 1.34783 * 119.99585 * 179.97438 * 5 4 3 7 7 O 1.21284 * 119.99976 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00059 * 179.97438 * 6 5 4 9 9 C 1.50699 * 109.47151 * 180.02562 * 8 6 5 10 10 C 1.38328 * 119.96224 * 270.02423 * 9 8 6 11 11 C 1.38281 * 120.13505 * 179.97438 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46814 * 90.00164 * 19 17 15 21 21 H 1.48501 * 109.47378 * 210.00272 * 19 17 15 22 22 H 1.48503 * 109.47143 * 330.00397 * 19 17 15 23 23 C 1.38073 * 119.96539 * 89.99818 * 9 8 6 24 24 C 1.53003 * 117.52049 * 145.69581 * 2 1 3 25 25 C 1.52996 * 117.50058 * 214.32829 * 2 1 3 26 26 H 1.08999 * 109.47377 * 85.58803 * 1 2 3 27 27 H 1.09007 * 109.46858 * 205.58785 * 1 2 3 28 28 H 1.08997 * 109.47279 * 325.58249 * 1 2 3 29 29 H 1.08996 * 109.46988 * 274.32726 * 3 2 1 30 30 H 1.09003 * 109.46879 * 154.32936 * 3 2 1 31 31 H 1.08997 * 109.46933 * 60.00090 * 4 3 2 32 32 H 1.08997 * 109.46850 * 299.99912 * 4 3 2 33 33 H 0.97001 * 120.00603 * 0.02562 * 5 4 3 34 34 H 1.09004 * 109.46756 * 60.00007 * 8 6 5 35 35 H 1.08998 * 109.46908 * 300.00650 * 8 6 5 36 36 H 1.08001 * 119.93314 * 359.97438 * 10 9 8 37 37 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.03256 * 180.31909 * 12 11 10 39 39 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03547 * 0.04988 * 23 9 8 41 41 H 1.08999 * 117.50482 * 214.96806 * 24 2 1 42 42 H 1.09000 * 117.49826 * 359.97438 * 24 2 1 43 43 H 1.08999 * 117.50344 * 359.97438 * 25 2 1 44 44 H 1.09004 * 117.49849 * 144.99916 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 1.3350 2.3543 0.8135 5 7 1.9666 3.6762 0.8129 6 6 1.3873 4.7001 1.4707 7 8 0.3434 4.5270 2.0634 8 6 2.0372 6.0597 1.4706 9 6 1.1953 7.0190 2.2718 10 6 0.1992 7.7498 1.6495 11 6 -0.5758 8.6307 2.3813 12 6 -0.3617 8.7785 3.7378 13 6 0.6411 8.0505 4.3643 14 8 0.8579 8.1981 5.6963 15 6 0.1482 9.1535 6.3298 16 1 -0.6122 9.7044 5.7963 17 6 0.3948 9.4288 7.6662 18 7 1.3214 8.7580 8.3159 19 14 -0.5880 10.7530 8.5438 20 1 -1.8022 10.1491 9.1489 21 1 0.2457 11.3631 9.6106 22 1 -0.9887 11.7996 7.5694 23 6 1.4185 7.1671 3.6263 24 6 2.2369 -1.1209 0.7647 25 6 2.2364 -1.1207 -0.7653 26 1 -0.3634 0.0791 -1.0246 27 1 -0.3633 -0.9269 0.4439 28 1 -0.3634 0.8477 0.5808 29 1 2.2765 1.7416 -1.0247 30 1 3.1822 1.3087 0.4452 31 1 1.2483 1.9930 1.8382 32 1 0.3427 2.4259 0.3683 33 1 2.8013 3.8148 0.3386 34 1 2.1244 6.4207 0.4458 35 1 3.0294 5.9881 1.9162 36 1 0.0266 7.6322 0.5899 37 1 -1.3524 9.2001 1.8925 38 1 -0.9708 9.4628 4.3098 39 1 1.4941 8.9509 9.2507 40 1 2.1966 6.5965 4.1115 41 1 3.1721 -0.8750 1.2677 42 1 1.6120 -1.8584 1.2684 43 1 1.6113 -1.8583 -1.2685 44 1 3.1713 -0.8746 -1.2688 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279435088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:23 Heat of formation + Delta-G solvation = -25.873696 kcal Electronic energy + Delta-G solvation = -23380.812441 eV Core-core repulsion = 19878.308372 eV Total energy + Delta-G solvation = -3502.504069 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.84675 -38.93850 -38.48625 -36.44113 -34.88427 -32.37946 -32.01997 -30.67164 -29.12452 -28.39044 -26.94482 -25.19903 -23.66142 -22.74182 -21.60660 -21.13394 -20.26426 -19.08896 -17.61124 -16.98740 -16.79622 -16.12570 -15.82170 -15.50115 -15.05093 -14.77770 -14.38166 -14.24145 -14.04986 -13.65493 -13.41301 -13.31550 -13.17577 -12.62276 -12.50108 -12.36328 -12.25622 -12.01054 -11.77485 -11.62856 -11.50666 -11.38497 -11.21491 -10.76887 -10.72444 -10.55213 -10.48128 -10.39593 -9.95366 -9.66971 -9.26798 -9.05768 -8.77405 -7.98843 -7.14308 -6.37871 -3.96720 2.16832 2.46840 2.84209 3.15991 3.17736 3.22070 3.23023 3.39815 4.02370 4.31236 4.36728 4.54152 4.59328 4.69818 4.90638 4.97313 5.05403 5.17054 5.19591 5.23564 5.29417 5.32435 5.47018 5.51920 5.55519 5.56946 5.69852 5.74370 5.76825 5.79026 5.81571 5.86376 5.99837 6.00779 6.25105 6.41298 6.43218 6.73489 6.99433 7.14406 7.34367 7.43993 7.50404 7.52466 7.90692 8.07459 8.38471 9.07983 9.79628 10.80557 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023144 B = 0.002375 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.545085 B =11786.899568 C =12404.751284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C -0.092 4.092 4 C 0.119 3.881 5 N -0.741 5.741 6 C 0.513 3.487 7 O -0.519 6.519 8 C -0.094 4.094 9 C -0.033 4.033 10 C -0.196 4.196 11 C -0.075 4.075 12 C -0.231 4.231 13 C 0.154 3.846 14 O -0.180 6.180 15 C -0.390 4.390 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.865 5.865 19 Si 0.940 3.060 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.174 4.174 24 C -0.175 4.175 25 C -0.175 4.175 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.397 0.603 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.269 0.731 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.392 -14.131 -18.879 23.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.125 4.125 3 C -0.130 4.130 4 C -0.004 4.004 5 N -0.395 5.395 6 C 0.299 3.701 7 O -0.393 6.393 8 C -0.134 4.134 9 C -0.033 4.033 10 C -0.215 4.215 11 C -0.094 4.094 12 C -0.250 4.250 13 C 0.101 3.899 14 O -0.084 6.084 15 C -0.466 4.466 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.501 5.501 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.194 4.194 24 C -0.211 4.211 25 C -0.212 4.212 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.231 0.769 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.144 0.856 39 H 0.079 0.921 40 H 0.131 0.869 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.852 -14.375 -18.020 23.227 hybrid contribution -0.097 0.617 0.195 0.654 sum 2.756 -13.758 -17.826 22.685 Atomic orbital electron populations 1.21513 0.91790 1.02781 1.02215 1.21366 0.95079 0.90408 1.05637 1.21295 0.98673 0.92463 1.00583 1.21410 0.96621 0.81650 1.00747 1.46065 1.27618 1.10112 1.55747 1.20765 0.85234 0.85970 0.78143 1.90761 1.22694 1.83908 1.41897 1.20591 0.99739 0.91168 1.01877 1.18663 0.96180 0.95740 0.92759 1.20348 1.00113 1.02387 0.98684 1.20675 0.97840 0.97188 0.93651 1.21169 1.02604 1.06028 0.95208 1.19279 0.92442 0.93090 0.85072 1.83976 1.58946 1.50967 1.14510 1.21315 1.17368 1.14146 0.93802 0.89141 1.25272 0.97091 0.98471 0.95761 1.70041 1.30211 1.39410 1.10389 0.85722 0.78909 0.79723 0.79118 1.19931 1.20318 1.19234 1.19948 1.03341 1.03467 0.92614 1.23195 1.02482 1.01192 0.94281 1.23038 1.02377 1.01257 0.94574 0.92140 0.92367 0.90939 0.90928 0.91064 0.91414 0.91120 0.76899 0.88435 0.88287 0.87963 0.87501 0.85640 0.92136 0.86854 0.88745 0.88749 0.88796 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 9.49 37.15 0.35 -0.59 16 2 C -0.12 -0.90 2.47 -154.51 -0.38 -1.28 16 3 C -0.09 -0.65 5.52 -26.73 -0.15 -0.80 16 4 C 0.12 1.19 4.68 -4.04 -0.02 1.17 16 5 N -0.74 -7.70 5.56 -60.29 -0.33 -8.03 16 6 C 0.51 7.58 7.82 -10.98 -0.09 7.49 16 7 O -0.52 -10.38 16.03 5.55 0.09 -10.30 16 8 C -0.09 -1.27 5.83 -29.04 -0.17 -1.44 16 9 C -0.03 -0.62 4.37 -104.65 -0.46 -1.07 16 10 C -0.20 -3.64 9.70 -39.53 -0.38 -4.02 16 11 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 12 C -0.23 -5.33 9.17 -39.40 -0.36 -5.69 16 13 C 0.15 3.95 6.65 -39.11 -0.26 3.69 16 14 O -0.18 -5.36 9.76 0.05 0.00 -5.36 16 15 C -0.39 -11.28 9.49 30.89 0.29 -10.99 16 16 H 0.09 2.43 5.21 -52.49 -0.27 2.15 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.87 -26.03 13.67 55.48 0.76 -25.27 16 19 Si 0.94 21.10 29.55 -169.99 -5.02 16.07 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 C -0.17 -3.92 9.65 -39.39 -0.38 -4.30 16 24 C -0.17 -1.21 9.82 -26.73 -0.26 -1.47 16 25 C -0.18 -1.10 9.97 -26.73 -0.27 -1.37 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 28 H 0.07 0.62 5.59 -51.93 -0.29 0.33 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.47 7.90 -51.93 -0.41 0.06 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.77 6.45 -51.93 -0.33 0.43 16 33 H 0.40 2.75 8.47 -40.82 -0.35 2.41 16 34 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 35 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 36 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.13 2.87 5.64 -52.49 -0.30 2.58 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 40 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 41 H 0.09 0.63 8.05 -51.93 -0.42 0.21 16 42 H 0.09 0.63 8.05 -51.93 -0.42 0.21 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 368.66 15.07 5.56 5.56 Total: -1.00 -35.09 368.66 -8.53 -43.62 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -6.55 Total: 5.30 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -3.02 Total: -21.59 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.42 Total: -33.31 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.09 Total: -15.65 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.09 -8.53 -43.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279435088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.743 kcal (2) G-P(sol) polarization free energy of solvation -35.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds