Wall clock time and date at job start Tue Mar 31 2020 08:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 115.54923 * 2 1 4 4 C 1.53002 * 109.47073 * 34.33008 * 3 2 1 5 5 N 1.46503 * 109.46556 * 180.02562 * 4 3 2 6 6 C 1.34783 * 119.99585 * 179.97438 * 5 4 3 7 7 O 1.21284 * 119.99976 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00059 * 179.97438 * 6 5 4 9 9 C 1.50699 * 109.47151 * 180.02562 * 8 6 5 10 10 C 1.38328 * 119.96224 * 270.02423 * 9 8 6 11 11 C 1.38281 * 120.13505 * 179.97438 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46814 * 90.00164 * 19 17 15 21 21 H 1.48501 * 109.47378 * 210.00272 * 19 17 15 22 22 H 1.48503 * 109.47143 * 330.00397 * 19 17 15 23 23 C 1.38073 * 119.96539 * 89.99818 * 9 8 6 24 24 C 1.53003 * 117.52049 * 145.69581 * 2 1 3 25 25 C 1.52996 * 117.50058 * 214.32829 * 2 1 3 26 26 H 1.08999 * 109.47377 * 85.58803 * 1 2 3 27 27 H 1.09007 * 109.46858 * 205.58785 * 1 2 3 28 28 H 1.08997 * 109.47279 * 325.58249 * 1 2 3 29 29 H 1.08996 * 109.46988 * 274.32726 * 3 2 1 30 30 H 1.09003 * 109.46879 * 154.32936 * 3 2 1 31 31 H 1.08997 * 109.46933 * 60.00090 * 4 3 2 32 32 H 1.08997 * 109.46850 * 299.99912 * 4 3 2 33 33 H 0.97001 * 120.00603 * 0.02562 * 5 4 3 34 34 H 1.09004 * 109.46756 * 60.00007 * 8 6 5 35 35 H 1.08998 * 109.46908 * 300.00650 * 8 6 5 36 36 H 1.08001 * 119.93314 * 359.97438 * 10 9 8 37 37 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.03256 * 180.31909 * 12 11 10 39 39 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03547 * 0.04988 * 23 9 8 41 41 H 1.08999 * 117.50482 * 214.96806 * 24 2 1 42 42 H 1.09000 * 117.49826 * 359.97438 * 24 2 1 43 43 H 1.08999 * 117.50344 * 359.97438 * 25 2 1 44 44 H 1.09004 * 117.49849 * 144.99916 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 1.3350 2.3543 0.8135 5 7 1.9666 3.6762 0.8129 6 6 1.3873 4.7001 1.4707 7 8 0.3434 4.5270 2.0634 8 6 2.0372 6.0597 1.4706 9 6 1.1953 7.0190 2.2718 10 6 0.1992 7.7498 1.6495 11 6 -0.5758 8.6307 2.3813 12 6 -0.3617 8.7785 3.7378 13 6 0.6411 8.0505 4.3643 14 8 0.8579 8.1981 5.6963 15 6 0.1482 9.1535 6.3298 16 1 -0.6122 9.7044 5.7963 17 6 0.3948 9.4288 7.6662 18 7 1.3214 8.7580 8.3159 19 14 -0.5880 10.7530 8.5438 20 1 -1.8022 10.1491 9.1489 21 1 0.2457 11.3631 9.6106 22 1 -0.9887 11.7996 7.5694 23 6 1.4185 7.1671 3.6263 24 6 2.2369 -1.1209 0.7647 25 6 2.2364 -1.1207 -0.7653 26 1 -0.3634 0.0791 -1.0246 27 1 -0.3633 -0.9269 0.4439 28 1 -0.3634 0.8477 0.5808 29 1 2.2765 1.7416 -1.0247 30 1 3.1822 1.3087 0.4452 31 1 1.2483 1.9930 1.8382 32 1 0.3427 2.4259 0.3683 33 1 2.8013 3.8148 0.3386 34 1 2.1244 6.4207 0.4458 35 1 3.0294 5.9881 1.9162 36 1 0.0266 7.6322 0.5899 37 1 -1.3524 9.2001 1.8925 38 1 -0.9708 9.4628 4.3098 39 1 1.4941 8.9509 9.2507 40 1 2.1966 6.5965 4.1115 41 1 3.1721 -0.8750 1.2677 42 1 1.6120 -1.8584 1.2684 43 1 1.6113 -1.8583 -1.2685 44 1 3.1713 -0.8746 -1.2688 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279435088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:22 Heat of formation + Delta-G solvation = -48.711011 kcal Electronic energy + Delta-G solvation = -23381.802741 eV Core-core repulsion = 19878.308372 eV Total energy + Delta-G solvation = -3503.494369 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13173 -40.42061 -39.31823 -38.18024 -35.89394 -34.34299 -33.52785 -31.58694 -30.81576 -29.11967 -28.24478 -27.22997 -24.54278 -23.30113 -23.21623 -22.65434 -21.52025 -19.79693 -19.44331 -18.77874 -17.90366 -17.11277 -16.90485 -16.65992 -16.27295 -16.17210 -16.04848 -15.51280 -15.35866 -15.12543 -14.75280 -14.46007 -14.31540 -13.99220 -13.87948 -13.58879 -13.16547 -12.99078 -12.96510 -12.83866 -12.53434 -12.46314 -12.37990 -12.22757 -12.20916 -12.09880 -12.04249 -11.20141 -11.11011 -10.88435 -10.78665 -10.48570 -10.05419 -9.62827 -8.97193 -8.46951 -6.15507 0.52934 0.76532 1.33740 1.43750 1.51945 1.70009 2.17654 2.24175 2.83883 2.87087 3.18866 3.45058 3.72014 3.79663 3.84081 4.00072 4.06684 4.11291 4.20672 4.25503 4.32954 4.43580 4.47055 4.58496 4.60361 4.66539 4.74621 4.81227 4.85952 4.89281 5.04011 5.06976 5.08657 5.13236 5.14735 5.19927 5.28822 5.31795 5.38757 5.52107 5.65882 5.73522 5.76274 6.03116 6.24621 6.61986 6.97519 7.34363 7.79466 8.76742 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023144 B = 0.002375 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.545085 B =11786.899568 C =12404.751284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.137 4.137 3 C -0.081 4.081 4 C 0.120 3.880 5 N -0.718 5.718 6 C 0.512 3.488 7 O -0.582 6.582 8 C -0.091 4.091 9 C -0.026 4.026 10 C -0.180 4.180 11 C -0.074 4.074 12 C -0.247 4.247 13 C 0.111 3.889 14 O -0.235 6.235 15 C -0.414 4.414 16 H 0.100 0.900 17 C -0.026 4.026 18 N -0.923 5.923 19 Si 1.021 2.979 20 H -0.264 1.264 21 H -0.269 1.269 22 H -0.252 1.252 23 C -0.194 4.194 24 C -0.184 4.184 25 C -0.163 4.163 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.419 0.581 34 H 0.146 0.854 35 H 0.122 0.878 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.117 0.883 39 H 0.272 0.728 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.567 -14.065 -22.541 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.137 4.137 3 C -0.118 4.118 4 C -0.004 4.004 5 N -0.372 5.372 6 C 0.299 3.701 7 O -0.461 6.461 8 C -0.130 4.130 9 C -0.027 4.027 10 C -0.199 4.199 11 C -0.092 4.092 12 C -0.267 4.267 13 C 0.061 3.939 14 O -0.142 6.142 15 C -0.490 4.490 16 H 0.118 0.882 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.840 3.160 20 H -0.189 1.189 21 H -0.193 1.193 22 H -0.176 1.176 23 C -0.213 4.213 24 C -0.221 4.221 25 C -0.200 4.200 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.256 0.744 34 H 0.164 0.836 35 H 0.140 0.860 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.072 -14.338 -21.780 26.256 hybrid contribution -0.128 0.426 0.999 1.094 sum 2.944 -13.912 -20.781 25.181 Atomic orbital electron populations 1.21496 0.92346 1.02126 1.02345 1.21409 0.94830 0.90814 1.06671 1.21225 0.98257 0.91421 1.00940 1.21417 0.97109 0.81894 0.99942 1.45864 1.27845 1.09316 1.54170 1.20967 0.84481 0.87065 0.77593 1.90755 1.25592 1.84927 1.44824 1.20711 0.99350 0.89188 1.03753 1.19222 0.96256 0.95705 0.91495 1.20988 0.98099 1.00008 1.00791 1.21140 0.98590 0.97337 0.92154 1.21294 1.02274 1.06104 0.96985 1.19891 0.94474 0.95150 0.84413 1.83935 1.60826 1.52635 1.16791 1.21830 1.17935 1.14607 0.94645 0.88247 1.26631 0.98304 1.01086 0.96224 1.70190 1.32855 1.42083 1.10980 0.84566 0.77224 0.76428 0.77823 1.18945 1.19336 1.17558 1.20233 1.03362 1.03270 0.94445 1.23260 1.02557 1.01191 0.95114 1.23100 1.02584 1.00320 0.93979 0.91431 0.92299 0.92524 0.89167 0.90067 0.93800 0.91991 0.74378 0.83646 0.86023 0.83420 0.83675 0.86474 0.91853 0.87627 0.88544 0.88992 0.88288 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.49 71.98 0.68 -1.11 16 2 C -0.14 -1.75 2.47 -52.18 -0.13 -1.88 16 3 C -0.08 -0.94 5.52 30.60 0.17 -0.77 16 4 C 0.12 2.24 4.68 86.38 0.40 2.65 16 5 N -0.72 -12.94 5.56 -463.05 -2.57 -15.51 16 6 C 0.51 13.99 7.82 87.66 0.69 14.68 16 7 O -0.58 -23.11 16.03 -3.04 -0.05 -23.16 16 8 C -0.09 -2.12 5.83 29.10 0.17 -1.95 16 9 C -0.03 -0.93 4.37 -19.88 -0.09 -1.02 16 10 C -0.18 -6.04 9.70 22.30 0.22 -5.82 16 11 C -0.07 -2.76 10.04 22.25 0.22 -2.54 16 12 C -0.25 -11.65 9.17 22.39 0.21 -11.44 16 13 C 0.11 5.95 6.65 22.58 0.15 6.10 16 14 O -0.23 -14.99 9.76 -22.74 -0.22 -15.21 16 15 C -0.41 -25.33 9.49 67.92 0.64 -24.69 16 16 H 0.10 5.61 5.21 -2.91 -0.02 5.59 16 17 C -0.03 -1.51 5.49 84.83 0.47 -1.04 16 18 N -0.92 -58.63 13.67 21.61 0.30 -58.34 16 19 Si 1.02 44.50 29.55 68.60 2.03 46.53 16 20 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 23 C -0.19 -8.94 9.65 22.39 0.22 -8.73 16 24 C -0.18 -2.31 9.82 30.60 0.30 -2.01 16 25 C -0.16 -1.66 9.97 30.59 0.31 -1.36 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.80 7.90 -2.38 -0.02 0.78 16 28 H 0.06 0.98 5.59 -2.39 -0.01 0.96 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.81 7.90 -2.39 -0.02 0.79 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.30 6.45 -2.39 -0.02 1.29 16 33 H 0.42 4.05 8.47 -92.71 -0.79 3.26 16 34 H 0.15 2.06 8.09 -2.38 -0.02 2.05 16 35 H 0.12 2.36 8.08 -2.39 -0.02 2.34 16 36 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 37 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 39 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 40 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 41 H 0.10 1.15 8.05 -2.39 -0.02 1.13 16 42 H 0.09 1.17 8.05 -2.39 -0.02 1.15 16 43 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -84.22 368.66 4.32 -79.89 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.22 Total: 26.74 kcal Atomic # 6 Polarization: -45.56 SS G_CDS: 4.62 Total: -40.94 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -2.28 Total: -73.85 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -0.27 Total: -38.38 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -84.22 4.32 -79.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279435088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.181 kcal (2) G-P(sol) polarization free energy of solvation -84.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds