Wall clock time and date at job start Tue Mar 31 2020 08:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86800 * 119.99937 * 2 1 4 4 H 1.48502 * 109.46988 * 270.00019 * 3 2 1 5 5 H 1.48493 * 109.47083 * 30.00344 * 3 2 1 6 6 H 1.48506 * 109.46726 * 150.00565 * 3 2 1 7 7 C 1.39903 * 119.99486 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99644 * 196.83318 * 7 2 1 9 9 C 1.41148 * 120.00588 * 16.83131 * 7 2 1 10 10 C 1.40863 * 120.16571 * 205.35173 * 9 7 2 11 11 C 1.36382 * 119.83150 * 179.97438 * 10 9 7 12 12 C 1.39479 * 120.16266 * 0.02710 * 11 10 9 13 13 N 1.39236 * 119.83064 * 179.97438 * 12 11 10 14 14 C 1.34781 * 120.00090 * 145.61178 * 13 12 11 15 15 O 1.21284 * 120.00076 * 354.89831 * 14 13 12 16 16 C 1.50703 * 120.00094 * 175.17443 * 14 13 12 17 17 C 1.52995 * 109.46929 * 179.72182 * 16 14 13 18 18 H 1.08998 * 109.47284 * 55.00544 * 17 16 14 19 19 C 1.53001 * 109.47507 * 295.00023 * 17 16 14 20 20 C 1.53002 * 109.47111 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47088 * 59.99975 * 20 19 17 22 22 C 1.52999 * 109.47513 * 299.99869 * 21 20 19 23 23 C 1.53002 * 109.46837 * 59.99977 * 22 21 20 24 24 H 1.08998 * 109.47294 * 59.99975 * 23 22 21 25 25 O 1.42897 * 109.47338 * 180.02562 * 23 22 21 26 26 C 1.39478 * 120.33770 * 0.22847 * 12 11 10 27 27 C 1.36374 * 120.16471 * 359.48201 * 26 12 11 28 28 H 0.97002 * 119.99971 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.08560 * 0.02562 * 10 9 7 30 30 H 1.07991 * 119.92030 * 180.02562 * 11 10 9 31 31 H 0.96998 * 120.00262 * 325.61362 * 13 12 11 32 32 H 1.08997 * 109.46794 * 299.72655 * 16 14 13 33 33 H 1.09008 * 109.46785 * 59.72595 * 16 14 13 34 34 H 1.08998 * 109.47274 * 300.00528 * 19 17 16 35 35 H 1.08998 * 109.46649 * 59.99989 * 19 17 16 36 36 H 1.09001 * 109.46826 * 300.00073 * 20 19 17 37 37 H 1.08998 * 109.46974 * 180.02562 * 20 19 17 38 38 H 1.09007 * 109.46961 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.47208 * 60.00331 * 21 20 19 40 40 H 1.09001 * 109.47261 * 300.00429 * 22 21 20 41 41 H 1.08995 * 109.47323 * 179.97438 * 22 21 20 42 42 H 0.96699 * 113.99854 * 300.00544 * 25 23 22 43 43 H 1.07995 * 119.91872 * 179.72542 * 26 12 11 44 44 H 1.08007 * 120.08573 * 180.23093 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4403 2.6526 0.7001 6 1 3.5404 1.4401 0.7000 7 6 2.0082 -1.2117 -0.0005 8 1 3.0535 -1.2318 0.2703 9 6 1.3478 -2.4077 -0.3550 10 6 1.8186 -3.6454 0.1254 11 6 1.1750 -4.7968 -0.2209 12 6 0.0536 -4.7509 -1.0491 13 7 -0.5979 -5.9308 -1.3988 14 6 -1.9360 -5.9396 -1.5593 15 8 -2.5834 -4.9448 -1.3096 16 6 -2.6287 -7.1875 -2.0430 17 6 -4.1348 -6.9332 -2.1310 18 1 -4.3201 -6.0621 -2.7594 19 6 -4.6920 -6.6787 -0.7290 20 6 -6.1982 -6.4250 -0.8171 21 6 -6.8868 -7.6485 -1.4251 22 6 -6.3297 -7.9032 -2.8271 23 6 -4.8234 -8.1568 -2.7390 24 1 -4.6378 -9.0278 -2.1106 25 8 -4.3029 -8.3941 -4.0485 26 6 -0.4153 -3.5298 -1.5331 27 6 0.2143 -2.3696 -1.1906 28 1 -0.4850 0.8401 0.0004 29 1 2.6865 -3.6823 0.7672 30 1 1.5344 -5.7464 0.1469 31 1 -0.0887 -6.7464 -1.5269 32 1 -2.2473 -7.4561 -3.0281 33 1 -2.4381 -8.0027 -1.3448 34 1 -4.5067 -7.5498 -0.1007 35 1 -4.2011 -5.8072 -0.2957 36 1 -6.3838 -5.5539 -1.4455 37 1 -6.5951 -6.2432 0.1817 38 1 -7.9600 -7.4680 -1.4874 39 1 -6.7012 -8.5196 -0.7966 40 1 -6.5153 -7.0321 -3.4556 41 1 -6.8199 -8.7751 -3.2600 42 1 -4.6951 -9.1567 -4.4954 43 1 -1.2815 -3.5025 -2.1775 44 1 -0.1521 -1.4243 -1.5631 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280674844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:11 Heat of formation + Delta-G solvation = -92.797784 kcal Electronic energy + Delta-G solvation = -24434.238301 eV Core-core repulsion = 20928.832186 eV Total energy + Delta-G solvation = -3505.406115 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.04851 -38.82931 -37.15839 -35.64988 -34.39544 -32.93329 -32.55618 -29.79527 -29.47706 -29.05601 -27.03103 -24.68566 -22.78792 -21.98283 -21.27564 -20.67104 -19.91209 -19.30118 -17.39391 -17.29081 -16.79845 -16.24829 -15.35120 -15.19667 -14.98026 -14.48903 -14.33261 -13.97892 -13.85661 -13.28616 -13.09608 -12.92388 -12.72860 -12.59210 -12.20829 -11.99162 -11.79798 -11.68482 -11.46645 -11.34697 -11.11486 -11.04540 -10.89649 -10.74074 -10.49979 -10.45127 -10.26540 -9.94300 -9.89288 -9.70531 -9.37841 -9.01696 -8.59128 -7.48617 -6.95788 -6.69576 -4.25723 2.63709 3.04678 3.09738 3.13200 3.14271 3.46259 3.82134 3.96310 4.03638 4.51423 4.60787 4.68145 4.84098 4.99546 5.07414 5.17490 5.22762 5.30137 5.38602 5.52536 5.58908 5.63278 5.75366 5.81603 5.86359 5.95985 6.07983 6.14822 6.17157 6.18975 6.42002 6.45237 6.51233 6.87277 7.04249 7.09341 7.20034 7.34000 7.47951 7.63337 7.73469 8.02795 8.08887 8.26401 8.38272 8.66656 8.87557 8.92206 9.06499 10.23130 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025036 B = 0.002909 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.116259 B = 9621.812593 C =10216.562761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.078 0.922 9 C 0.105 3.895 10 C -0.216 4.216 11 C -0.106 4.106 12 C -0.003 4.003 13 N -0.655 5.655 14 C 0.497 3.503 15 O -0.527 6.527 16 C -0.132 4.132 17 C -0.060 4.060 18 H 0.085 0.915 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.150 4.150 23 C 0.109 3.891 24 H 0.053 0.947 25 O -0.566 6.566 26 C -0.085 4.085 27 C -0.154 4.154 28 H 0.281 0.719 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.393 0.607 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.374 0.626 43 H 0.100 0.900 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.986 -15.671 -4.482 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.096 0.904 9 C 0.102 3.898 10 C -0.236 4.236 11 C -0.126 4.126 12 C -0.095 4.095 13 N -0.298 5.298 14 C 0.284 3.716 15 O -0.403 6.403 16 C -0.172 4.172 17 C -0.079 4.079 18 H 0.103 0.897 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.188 4.188 23 C 0.050 3.950 24 H 0.071 0.929 25 O -0.371 6.371 26 C -0.106 4.106 27 C -0.174 4.174 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.226 0.774 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.220 0.780 43 H 0.118 0.882 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.319 -14.269 -4.148 18.091 hybrid contribution 0.213 -0.238 -0.096 0.334 sum -10.106 -14.507 -4.244 18.182 Atomic orbital electron populations 1.69864 1.07516 1.29216 1.34881 1.25934 0.94740 1.01318 0.92429 0.86308 0.80419 0.80662 0.79282 1.19295 1.20344 1.18660 1.19540 0.97743 0.91199 1.40502 0.90427 1.17657 0.91255 0.92065 0.88778 1.20550 1.03790 0.92582 1.06655 1.20052 0.96966 0.97152 0.98453 1.17186 0.99269 0.85218 1.07858 1.43061 1.06745 1.11387 1.68654 1.20620 0.82259 0.90140 0.78589 1.90678 1.64498 1.35546 1.49625 1.21648 0.96011 0.96435 1.03147 1.20844 0.92485 0.97175 0.97351 0.89667 1.21731 0.95402 1.03176 0.95447 1.21545 0.95577 0.97788 1.00884 1.21503 0.99582 0.98748 0.95624 1.22246 0.96107 1.02248 0.98176 1.21884 0.91993 0.97425 0.83689 0.92873 1.86555 1.67008 1.53200 1.30306 1.20408 0.98883 0.91672 0.99589 1.20987 0.98940 0.96681 1.00826 0.90832 0.88707 0.89297 0.77391 0.88449 0.89760 0.92663 0.88732 0.91683 0.91889 0.91977 0.92081 0.91038 0.92041 0.77988 0.88171 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.14 10.94 55.55 0.61 -20.53 16 2 C 0.07 1.89 5.15 -17.34 -0.09 1.80 16 3 Si 0.91 18.99 29.59 -169.99 -5.03 13.96 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.39 9.04 -37.86 -0.34 -12.73 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 9 C 0.11 2.86 5.57 -106.80 -0.59 2.27 16 10 C -0.22 -5.33 9.74 -39.26 -0.38 -5.71 16 11 C -0.11 -2.38 9.90 -39.79 -0.39 -2.77 16 12 C 0.00 -0.07 6.27 -83.57 -0.52 -0.59 16 13 N -0.66 -11.82 5.31 -9.74 -0.05 -11.87 16 14 C 0.50 8.85 7.27 -10.98 -0.08 8.77 16 15 O -0.53 -11.52 11.70 5.55 0.06 -11.46 16 16 C -0.13 -1.71 5.10 -27.88 -0.14 -1.85 16 17 C -0.06 -0.76 1.58 -90.62 -0.14 -0.90 16 18 H 0.08 1.30 7.95 -51.93 -0.41 0.88 16 19 C -0.12 -1.53 4.94 -26.73 -0.13 -1.66 16 20 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 21 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 22 C -0.15 -1.30 5.55 -26.73 -0.15 -1.45 16 23 C 0.11 1.06 2.90 -26.73 -0.08 0.99 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 O -0.57 -5.58 12.56 -35.23 -0.44 -6.02 16 26 C -0.09 -2.17 8.57 -39.79 -0.34 -2.51 16 27 C -0.15 -4.21 8.63 -39.26 -0.34 -4.55 16 28 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 29 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 30 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.39 5.54 8.82 -40.82 -0.36 5.18 16 32 H 0.10 1.20 7.53 -51.93 -0.39 0.81 16 33 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 1.54 5.95 -51.93 -0.31 1.23 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.37 2.02 9.08 45.56 0.41 2.43 16 43 H 0.10 2.55 6.48 -52.49 -0.34 2.21 16 44 H 0.12 3.37 6.18 -52.48 -0.32 3.05 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -31.45 351.05 -9.53 -40.98 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -5.92 Total: 13.19 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -4.05 Total: -23.54 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.56 Total: -32.41 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.38 Total: -17.48 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.45 -9.53 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280674844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.818 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds