Wall clock time and date at job start Tue Mar 31 2020 08:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86801 * 120.00240 * 2 1 4 4 H 1.48504 * 109.47058 * 240.00068 * 3 2 1 5 5 H 1.48498 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46991 * 120.00029 * 3 2 1 7 7 C 1.39904 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00501 * 184.43703 * 7 2 1 9 9 C 1.41152 * 120.00119 * 4.44348 * 7 2 1 10 10 C 1.40878 * 120.16043 * 325.21119 * 9 7 2 11 11 C 1.36375 * 119.82451 * 180.27674 * 10 9 7 12 12 C 1.39478 * 120.17288 * 359.47684 * 11 10 9 13 13 N 1.39235 * 119.83722 * 180.25865 * 12 11 10 14 14 C 1.34777 * 120.00142 * 215.57814 * 13 12 11 15 15 O 1.21283 * 119.99972 * 355.70871 * 14 13 12 16 16 C 1.50697 * 120.00039 * 175.70200 * 14 13 12 17 17 C 1.53004 * 109.47048 * 180.02562 * 16 14 13 18 18 H 1.09006 * 109.47023 * 305.00261 * 17 16 14 19 19 C 1.52997 * 109.47024 * 65.00405 * 17 16 14 20 20 C 1.53004 * 109.47024 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47033 * 300.00128 * 20 19 17 22 22 C 1.52997 * 109.47320 * 60.00053 * 21 20 19 23 23 C 1.52995 * 109.47033 * 185.00533 * 17 16 14 24 24 H 1.09006 * 109.46994 * 299.99745 * 23 17 16 25 25 O 1.42901 * 109.47659 * 59.99743 * 23 17 16 26 26 C 1.39484 * 120.32959 * 0.54826 * 12 11 10 27 27 C 1.36376 * 120.16903 * 359.70608 * 26 12 11 28 28 H 0.96997 * 119.99554 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.08434 * 0.02562 * 10 9 7 30 30 H 1.08007 * 119.91155 * 179.72734 * 11 10 9 31 31 H 0.96996 * 119.99591 * 35.57717 * 13 12 11 32 32 H 1.08997 * 109.47360 * 300.00243 * 16 14 13 33 33 H 1.09004 * 109.46660 * 60.00674 * 16 14 13 34 34 H 1.09001 * 109.46851 * 299.99593 * 19 17 16 35 35 H 1.08991 * 109.47427 * 60.00039 * 19 17 16 36 36 H 1.08999 * 109.47015 * 179.97438 * 20 19 17 37 37 H 1.09006 * 109.47023 * 59.99855 * 20 19 17 38 38 H 1.09006 * 109.46994 * 299.99745 * 21 20 19 39 39 H 1.09004 * 109.46997 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.46851 * 180.02562 * 22 21 20 41 41 H 1.08991 * 109.47427 * 59.99914 * 22 21 20 42 42 H 0.96692 * 114.00052 * 179.97438 * 25 23 17 43 43 H 1.08001 * 119.91783 * 179.73025 * 26 12 11 44 44 H 1.08002 * 120.08613 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6963 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0965 1.6963 1.2125 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2131 0.0729 9 6 1.3057 -2.4322 -0.0936 10 6 0.0417 -2.5700 0.5131 11 6 -0.6286 -3.7542 0.4226 12 6 -0.0707 -4.8238 -0.2775 13 7 -0.7636 -6.0280 -0.3700 14 6 -0.0903 -7.1955 -0.3585 15 8 1.1225 -7.1960 -0.3461 16 6 -0.8444 -8.5002 -0.3608 17 6 0.1493 -9.6636 -0.3454 18 1 0.8423 -9.5606 -1.1804 19 6 0.9302 -9.6499 0.9702 20 6 1.9234 -10.8136 0.9859 21 6 1.1628 -12.1349 0.8581 22 6 0.3819 -12.1487 -0.4576 23 6 -0.6108 -10.9852 -0.4736 24 1 -1.3038 -11.0882 0.3615 25 8 -1.3402 -10.9981 -1.7023 26 6 1.1805 -4.6951 -0.8804 27 6 1.8650 -3.5188 -0.7942 28 1 -0.4849 0.8401 0.0004 29 1 -0.3934 -1.7413 1.0518 30 1 -1.5957 -3.8628 0.8910 31 1 -1.7308 -6.0266 -0.4428 32 1 -1.4801 -8.5541 0.5229 33 1 -1.4619 -8.5613 -1.2570 34 1 1.4717 -8.7083 1.0615 35 1 0.2372 -9.7529 1.8052 36 1 2.4800 -10.8036 1.9230 37 1 2.6165 -10.7110 0.1509 38 1 0.4697 -12.2375 1.6931 39 1 1.8704 -12.9640 0.8697 40 1 -0.1603 -13.0899 -0.5484 41 1 1.0749 -12.0461 -1.2925 42 1 -1.8467 -11.8083 -1.8505 43 1 1.6081 -5.5290 -1.4173 44 1 2.8339 -3.4207 -1.2612 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280674846.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:14 Heat of formation + Delta-G solvation = -91.656697 kcal Electronic energy + Delta-G solvation = -24320.831499 eV Core-core repulsion = 20815.474865 eV Total energy + Delta-G solvation = -3505.356634 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.10734 -38.88166 -37.18053 -35.68288 -34.38639 -32.95304 -32.56140 -29.83926 -29.54712 -28.97502 -27.04932 -24.68705 -22.82193 -22.05494 -21.28126 -20.57970 -19.95356 -19.42850 -17.42949 -17.31849 -16.75051 -16.29831 -15.34733 -15.19583 -15.02628 -14.59136 -14.36797 -14.00244 -13.86432 -13.26067 -13.13719 -12.98209 -12.70578 -12.61678 -12.20576 -12.09591 -11.83862 -11.57395 -11.49614 -11.34554 -11.11697 -11.06157 -10.94825 -10.78285 -10.49896 -10.48816 -10.31022 -10.01018 -9.92381 -9.77158 -9.21108 -9.07032 -8.64565 -7.51384 -6.83933 -6.59560 -4.31046 2.60831 3.07439 3.09946 3.12768 3.13780 3.40228 3.78473 3.99815 4.00328 4.47991 4.57306 4.72333 4.80872 4.96107 5.03790 5.13003 5.19465 5.26457 5.35018 5.48263 5.56357 5.59700 5.70329 5.77877 5.82863 5.92498 6.04084 6.10104 6.13043 6.22818 6.40320 6.44167 6.51304 6.81312 6.97343 7.10275 7.25560 7.33395 7.44979 7.67566 7.79782 7.92119 8.09834 8.31877 8.35642 8.65828 8.82777 8.95703 9.04353 10.31817 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.036371 B = 0.002629 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.661926 B =10646.046331 C =11037.322854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.070 3.930 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.462 4.462 8 H 0.075 0.925 9 C 0.100 3.900 10 C -0.142 4.142 11 C -0.122 4.122 12 C 0.006 3.994 13 N -0.655 5.655 14 C 0.499 3.501 15 O -0.531 6.531 16 C -0.133 4.133 17 C -0.059 4.059 18 H 0.084 0.916 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.150 4.150 23 C 0.108 3.892 24 H 0.054 0.946 25 O -0.566 6.566 26 C -0.086 4.086 27 C -0.206 4.206 28 H 0.277 0.723 29 H 0.132 0.868 30 H 0.090 0.910 31 H 0.395 0.605 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.374 0.626 43 H 0.108 0.892 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 -19.655 1.051 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.145 4.145 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.097 3.903 10 C -0.162 4.162 11 C -0.142 4.142 12 C -0.086 4.086 13 N -0.297 5.297 14 C 0.287 3.713 15 O -0.409 6.409 16 C -0.173 4.173 17 C -0.078 4.078 18 H 0.103 0.897 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.188 4.188 23 C 0.050 3.950 24 H 0.072 0.928 25 O -0.371 6.371 26 C -0.106 4.106 27 C -0.226 4.226 28 H 0.088 0.912 29 H 0.149 0.851 30 H 0.108 0.892 31 H 0.228 0.772 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.221 0.779 43 H 0.126 0.874 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.689 -18.908 1.021 19.292 hybrid contribution -0.542 0.195 -0.038 0.577 sum -4.231 -18.714 0.982 19.211 Atomic orbital electron populations 1.69756 1.07249 1.28714 1.38453 1.25865 0.94946 1.01099 0.92567 0.86255 0.79791 0.80151 0.79762 1.19123 1.20465 1.19082 1.19461 0.94698 0.90237 1.44931 0.90701 1.17713 0.92167 0.91929 0.88465 1.21196 0.97139 0.95748 1.02070 1.20340 0.99280 0.94169 1.00427 1.17297 0.96442 0.85736 1.09168 1.43072 1.09677 1.04958 1.72038 1.20623 0.88493 0.85272 0.76947 1.90633 1.13899 1.87202 1.49128 1.21654 0.99148 0.92266 1.04243 1.20836 0.96136 0.90899 0.99921 0.89714 1.21733 0.98054 1.00469 0.95517 1.21545 0.98136 0.94023 1.02063 1.21505 0.99001 0.98073 0.96910 1.22237 0.99319 0.98133 0.99086 1.21873 0.92036 0.95137 0.85973 0.92849 1.86548 1.66075 1.43693 1.40790 1.20412 0.94214 0.97018 0.98923 1.20828 1.01155 0.94791 1.05797 0.91161 0.85076 0.89176 0.77154 0.89584 0.88466 0.88752 0.92610 0.91887 0.91729 0.92047 0.91966 0.92017 0.91059 0.77945 0.87434 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.25 10.59 55.55 0.59 -20.66 16 2 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 3 Si 0.92 19.19 29.56 -169.99 -5.03 14.16 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.46 -12.51 9.02 -37.85 -0.34 -12.86 16 8 H 0.07 1.95 7.85 -52.48 -0.41 1.54 16 9 C 0.10 2.71 5.55 -106.80 -0.59 2.12 16 10 C -0.14 -3.69 8.62 -39.25 -0.34 -4.03 16 11 C -0.12 -2.82 9.90 -39.79 -0.39 -3.21 16 12 C 0.01 0.13 6.31 -83.57 -0.53 -0.40 16 13 N -0.65 -11.65 5.30 -9.74 -0.05 -11.70 16 14 C 0.50 8.56 7.38 -10.99 -0.08 8.48 16 15 O -0.53 -10.95 11.39 5.56 0.06 -10.88 16 16 C -0.13 -1.66 5.10 -27.88 -0.14 -1.80 16 17 C -0.06 -0.71 1.58 -90.62 -0.14 -0.86 16 18 H 0.08 1.22 7.95 -51.93 -0.41 0.81 16 19 C -0.12 -1.46 4.95 -26.73 -0.13 -1.59 16 20 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 21 C -0.12 -0.96 5.92 -26.74 -0.16 -1.12 16 22 C -0.15 -1.23 5.54 -26.76 -0.15 -1.38 16 23 C 0.11 1.02 2.90 -26.76 -0.08 0.94 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 O -0.57 -5.37 12.56 -35.23 -0.44 -5.81 16 26 C -0.09 -2.09 8.61 -39.79 -0.34 -2.43 16 27 C -0.21 -5.30 9.74 -39.26 -0.38 -5.69 16 28 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 29 H 0.13 3.52 6.13 -52.49 -0.32 3.20 16 30 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 31 H 0.40 5.63 8.82 -40.82 -0.36 5.27 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.15 7.54 -51.93 -0.39 0.76 16 34 H 0.09 1.46 5.95 -51.93 -0.31 1.15 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.37 1.91 9.08 45.56 0.41 2.32 16 43 H 0.11 2.59 6.22 -52.49 -0.33 2.26 16 44 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 350.42 15.07 5.28 5.28 Total: -1.00 -30.73 350.42 -9.55 -40.28 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -5.90 Total: 12.85 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -4.05 Total: -23.51 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.54 Total: -32.36 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.38 Total: -16.70 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.73 -9.55 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280674846.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.378 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds