Wall clock time and date at job start Tue Mar 31 2020 08:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86799 * 119.99922 * 2 1 4 4 H 1.48497 * 109.47250 * 270.00151 * 3 2 1 5 5 H 1.48501 * 109.47137 * 30.00606 * 3 2 1 6 6 H 1.48503 * 109.47137 * 149.99887 * 3 2 1 7 7 C 1.39940 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99918 * 162.60262 * 7 2 1 9 9 C 1.41434 * 120.00094 * 342.60963 * 7 2 1 10 10 C 1.40783 * 120.18308 * 154.90833 * 9 7 2 11 11 C 1.37705 * 120.04543 * 180.02562 * 10 9 7 12 12 C 1.38377 * 120.40955 * 359.67334 * 11 10 9 13 13 C 1.39886 * 120.35507 * 0.60197 * 12 11 10 14 14 C 1.47882 * 120.02204 * 179.69537 * 13 12 11 15 15 O 1.21546 * 119.99855 * 179.72936 * 14 13 12 16 16 N 1.34783 * 120.00274 * 359.72723 * 14 13 12 17 17 C 1.46501 * 119.99859 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47506 * 325.00635 * 17 16 14 19 19 C 1.53005 * 109.47038 * 85.00530 * 17 16 14 20 20 O 1.42906 * 109.47038 * 64.99428 * 19 17 16 21 21 C 1.53000 * 109.46913 * 205.00312 * 17 16 14 22 22 C 1.54270 * 110.03009 * 177.17043 * 21 17 16 23 23 C 1.54892 * 104.19226 * 217.10315 * 22 21 17 24 24 C 1.54897 * 102.74909 * 37.94602 * 23 22 21 25 25 C 1.53871 * 110.03314 * 60.00133 * 21 17 16 26 26 C 1.39029 * 119.94831 * 359.42755 * 13 12 11 27 27 H 0.96998 * 120.00480 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.97943 * 0.02562 * 10 9 7 29 29 H 1.07995 * 119.80164 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.82139 * 180.30467 * 12 11 10 31 31 H 0.96998 * 119.99619 * 0.02562 * 16 14 13 32 32 H 1.09004 * 109.46566 * 304.99798 * 19 17 16 33 33 H 1.08994 * 109.47143 * 184.99446 * 19 17 16 34 34 H 0.96699 * 113.99651 * 180.02562 * 20 19 17 35 35 H 1.08997 * 110.01815 * 298.60952 * 21 17 16 36 36 H 1.08995 * 110.48417 * 335.78359 * 22 21 17 37 37 H 1.08997 * 110.48235 * 98.43006 * 22 21 17 38 38 H 1.08995 * 110.76014 * 279.62700 * 23 22 21 39 39 H 1.09005 * 110.91363 * 156.33049 * 23 22 21 40 40 H 1.08995 * 110.48078 * 203.37724 * 24 23 22 41 41 H 1.08998 * 110.59725 * 80.78686 * 24 23 22 42 42 H 1.08992 * 110.03362 * 238.56667 * 25 21 17 43 43 H 1.09002 * 110.03434 * 0.02562 * 25 21 17 44 44 H 1.08002 * 120.20072 * 180.25125 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6526 0.7002 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2119 -0.0005 8 1 3.0510 -1.2331 -0.2802 9 6 1.3494 -2.4090 0.3650 10 6 1.8189 -3.6484 -0.1095 11 6 1.1752 -4.8122 0.2477 12 6 0.0694 -4.7742 1.0787 13 6 -0.4150 -3.5515 1.5554 14 6 -1.6014 -3.5190 2.4376 15 8 -2.0190 -2.4568 2.8555 16 7 -2.2197 -4.6672 2.7782 17 6 -3.3947 -4.6349 3.6526 18 1 -3.2803 -3.8365 4.3858 19 6 -4.6484 -4.3805 2.8131 20 8 -4.8633 -5.4844 1.9314 21 6 -3.5290 -5.9764 4.3761 22 6 -4.7214 -5.9323 5.3539 23 6 -4.2405 -6.7528 6.5765 24 6 -2.7476 -6.3554 6.6890 25 6 -2.2741 -6.2454 5.2249 26 6 0.2231 -2.3675 1.2036 27 1 -0.4851 0.8400 0.0004 28 1 2.6846 -3.6867 -0.7542 29 1 1.5385 -5.7608 -0.1189 30 1 -0.4252 -5.6931 1.3568 31 1 -1.8862 -5.5149 2.4449 32 1 -4.5159 -3.4696 2.2293 33 1 -5.5098 -4.2682 3.4714 34 1 -5.6430 -5.3910 1.3671 35 1 -3.6687 -6.7787 3.6516 36 1 -4.9379 -4.9046 5.6454 37 1 -5.5999 -6.3958 4.9052 38 1 -4.3426 -7.8216 6.3888 39 1 -4.7853 -6.4663 7.4761 40 1 -2.1859 -7.1276 7.2146 41 1 -2.6433 -5.3966 7.1968 42 1 -1.8053 -7.1786 4.9130 43 1 -1.5696 -5.4201 5.1218 44 1 -0.1450 -1.4216 1.5726 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291269941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:47 Heat of formation + Delta-G solvation = -91.058888 kcal Electronic energy + Delta-G solvation = -24831.164151 eV Core-core repulsion = 21325.833441 eV Total energy + Delta-G solvation = -3505.330711 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.80241 -38.30007 -36.93231 -36.41297 -34.02813 -33.63813 -30.88502 -29.54276 -29.33226 -28.69671 -26.89630 -25.27840 -23.30789 -21.52846 -20.90404 -20.72966 -19.79789 -19.24632 -17.68276 -17.28725 -16.39612 -15.89729 -15.48933 -15.31121 -14.91514 -14.55958 -14.41877 -14.00405 -13.52781 -13.42704 -13.38610 -13.16197 -12.67978 -12.46601 -12.23183 -11.94658 -11.61872 -11.23953 -11.17254 -11.14610 -11.12395 -11.05824 -10.79880 -10.74389 -10.70014 -10.48659 -10.38954 -10.01180 -9.90620 -9.66386 -9.19489 -8.96292 -8.58312 -7.59960 -7.48986 -6.77984 -4.39372 2.24142 2.83301 3.08583 3.11627 3.17722 3.68872 3.88179 3.93709 4.36323 4.52829 4.54983 4.64099 4.67753 5.06135 5.25243 5.36741 5.38318 5.49307 5.53540 5.57759 5.63202 5.66786 5.69734 5.79417 5.83072 5.88572 5.99380 6.05419 6.12613 6.22631 6.24501 6.31951 6.43629 6.74357 6.94502 7.01465 7.05727 7.23502 7.40821 7.64942 7.73435 7.79833 7.95386 8.15028 8.23135 8.52991 8.82473 8.85875 9.00022 10.16849 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.019978 B = 0.003477 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.226247 B = 8050.732997 C = 8317.545784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.461 4.461 8 H 0.080 0.920 9 C 0.099 3.901 10 C -0.211 4.211 11 C -0.099 4.099 12 C -0.215 4.215 13 C -0.128 4.128 14 C 0.564 3.436 15 O -0.551 6.551 16 N -0.723 5.723 17 C 0.158 3.842 18 H 0.095 0.905 19 C 0.062 3.938 20 O -0.567 6.567 21 C -0.094 4.094 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.093 4.093 27 H 0.284 0.716 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.401 0.599 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.374 0.626 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.042 -10.290 8.492 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.490 4.490 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.117 4.117 12 C -0.235 4.235 13 C -0.131 4.131 14 C 0.355 3.645 15 O -0.430 6.430 16 N -0.375 5.375 17 C 0.052 3.948 18 H 0.113 0.887 19 C -0.017 4.017 20 O -0.371 6.371 21 C -0.113 4.113 22 C -0.152 4.152 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.162 4.162 26 C -0.113 4.113 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.236 0.764 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.220 0.780 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.004 -9.567 9.078 15.969 hybrid contribution -0.096 0.569 -0.616 0.844 sum -9.100 -8.998 8.462 15.342 Atomic orbital electron populations 1.69789 1.07566 1.29683 1.33871 1.25952 0.94758 1.01496 0.92322 0.86297 0.80627 0.80568 0.79185 1.19475 1.19983 1.18395 1.19569 0.98025 0.91017 1.40423 0.90142 1.17592 0.91220 0.92434 0.89130 1.21102 1.03438 0.92849 1.05696 1.20436 0.96154 0.96716 0.98398 1.20367 1.01272 0.94737 1.07104 1.19479 0.96569 0.95274 1.01753 1.18863 0.83153 0.82883 0.79581 1.90679 1.66882 1.30162 1.55285 1.45903 1.30284 1.09830 1.51504 1.21043 0.84245 0.98101 0.91397 0.88684 1.22679 0.97159 0.89326 0.92488 1.86459 1.51137 1.43971 1.55556 1.21944 0.95148 0.97135 0.97028 1.22366 0.97307 1.00354 0.95217 1.22487 0.96032 0.99815 0.97828 1.22363 0.95825 1.01236 0.96815 1.22243 0.97459 1.02132 0.94371 1.21621 0.96461 0.96394 0.96798 0.90517 0.88657 0.88935 0.89199 0.76364 0.92936 0.93320 0.77981 0.89668 0.91527 0.91537 0.91637 0.91794 0.91921 0.91700 0.91789 0.91095 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.95 10.97 55.55 0.61 -20.34 16 2 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 18.90 29.59 -169.99 -5.03 13.87 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.23 9.05 -37.73 -0.34 -12.57 16 8 H 0.08 2.02 7.90 -52.48 -0.41 1.61 16 9 C 0.10 2.64 5.57 -106.87 -0.59 2.04 16 10 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 11 C -0.10 -2.14 10.01 -39.73 -0.40 -2.54 16 12 C -0.21 -4.62 9.55 -38.91 -0.37 -4.99 16 13 C -0.13 -3.06 5.87 -105.04 -0.62 -3.67 16 14 C 0.56 12.44 7.74 -12.31 -0.10 12.34 16 15 O -0.55 -13.74 16.00 5.32 0.09 -13.65 16 16 N -0.72 -12.32 4.33 -54.73 -0.24 -12.56 16 17 C 0.16 2.26 1.61 -67.93 -0.11 2.15 16 18 H 0.10 1.49 7.55 -51.93 -0.39 1.10 16 19 C 0.06 0.83 6.56 37.16 0.24 1.08 16 20 O -0.57 -7.05 12.72 -35.23 -0.45 -7.50 16 21 C -0.09 -1.07 2.37 -89.50 -0.21 -1.29 16 22 C -0.11 -1.10 5.41 -25.07 -0.14 -1.23 16 23 C -0.12 -1.08 6.91 -24.73 -0.17 -1.25 16 24 C -0.12 -1.21 6.83 -25.07 -0.17 -1.38 16 25 C -0.12 -1.41 6.19 -25.61 -0.16 -1.57 16 26 C -0.09 -2.50 8.23 -38.44 -0.32 -2.81 16 27 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 28 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.09 1.64 6.38 -52.49 -0.33 1.30 16 31 H 0.40 6.33 6.62 -40.82 -0.27 6.06 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.53 7.44 -51.93 -0.39 0.14 16 34 H 0.37 3.12 9.12 45.56 0.42 3.53 16 35 H 0.08 1.03 7.54 -51.93 -0.39 0.64 16 36 H 0.07 0.64 7.74 -51.93 -0.40 0.24 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.95 7.38 -51.93 -0.38 0.57 16 44 H 0.13 3.86 5.77 -52.49 -0.30 3.56 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -30.30 356.58 -9.36 -39.67 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -5.80 Total: 14.50 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -3.92 Total: -19.36 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.37 Total: -32.90 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.36 Total: -21.15 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.30 -9.36 -39.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291269941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.393 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds