Wall clock time and date at job start Tue Mar 31 2020 08:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86799 * 120.00006 * 2 1 4 4 H 1.48504 * 109.47116 * 275.41083 * 3 2 1 5 5 H 1.48504 * 109.47403 * 35.41022 * 3 2 1 6 6 H 1.48500 * 109.47191 * 155.41232 * 3 2 1 7 7 C 1.39935 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99569 * 341.73674 * 7 2 1 9 9 C 1.41434 * 120.00192 * 161.73164 * 7 2 1 10 10 C 1.40781 * 120.17574 * 330.18425 * 9 7 2 11 11 C 1.37719 * 120.03649 * 180.02562 * 10 9 7 12 12 C 1.38364 * 120.41340 * 359.66768 * 11 10 9 13 13 C 1.39880 * 120.35775 * 0.61249 * 12 11 10 14 14 C 1.47886 * 120.02666 * 179.69383 * 13 12 11 15 15 O 1.21546 * 119.99970 * 179.72613 * 14 13 12 16 16 N 1.34779 * 119.99753 * 359.97438 * 14 13 12 17 17 C 1.46501 * 119.99857 * 179.72548 * 16 14 13 18 18 H 1.09001 * 109.47050 * 35.00134 * 17 16 14 19 19 C 1.52997 * 109.47308 * 275.00296 * 17 16 14 20 20 O 1.42899 * 109.47182 * 295.00023 * 19 17 16 21 21 C 1.53001 * 109.47245 * 154.99762 * 17 16 14 22 22 C 1.54276 * 110.02682 * 57.16958 * 21 17 16 23 23 C 1.54889 * 104.19229 * 217.10573 * 22 21 17 24 24 C 1.54882 * 102.75135 * 37.94234 * 23 22 21 25 25 C 1.53872 * 110.03526 * 300.00652 * 21 17 16 26 26 C 1.39034 * 119.94853 * 359.41112 * 13 12 11 27 27 H 0.97005 * 119.99822 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.98617 * 0.02562 * 10 9 7 29 29 H 1.08009 * 119.78843 * 179.97438 * 11 10 9 30 30 H 1.08006 * 119.82026 * 180.32135 * 12 11 10 31 31 H 0.97002 * 120.00157 * 359.72987 * 16 14 13 32 32 H 1.09005 * 109.47322 * 54.99998 * 19 17 16 33 33 H 1.09006 * 109.46995 * 174.99966 * 19 17 16 34 34 H 0.96696 * 114.00137 * 180.02562 * 20 19 17 35 35 H 1.08995 * 110.02144 * 178.60719 * 21 17 16 36 36 H 1.09000 * 110.48500 * 335.78082 * 22 21 17 37 37 H 1.08998 * 110.48296 * 98.42760 * 22 21 17 38 38 H 1.09004 * 110.75279 * 279.62488 * 23 22 21 39 39 H 1.09003 * 110.75690 * 156.25824 * 23 22 21 40 40 H 1.09001 * 110.49207 * 203.37853 * 24 23 22 41 41 H 1.09003 * 110.59848 * 80.79122 * 24 23 22 42 42 H 1.09005 * 110.03019 * 238.56643 * 25 21 17 43 43 H 1.08997 * 110.03255 * 359.94469 * 25 21 17 44 44 H 1.08000 * 120.20044 * 180.25560 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3939 5 1 1.5016 2.6170 0.8112 6 1 3.5924 1.4099 0.5825 7 6 2.0080 -1.2119 0.0005 8 1 1.5087 -2.1234 0.2941 9 6 3.3689 -1.2430 -0.3834 10 6 3.8625 -0.3111 -1.3160 11 6 5.1880 -0.3443 -1.6882 12 6 6.0445 -1.2859 -1.1457 13 6 5.5708 -2.2235 -0.2221 14 6 6.4911 -3.2309 0.3480 15 8 6.0801 -4.0422 1.1544 16 7 7.7868 -3.2461 -0.0227 17 6 8.7000 -4.2403 0.5466 18 1 8.1648 -5.1766 0.7048 19 6 9.2405 -3.7296 1.8838 20 8 10.0395 -2.5660 1.6614 21 6 9.8642 -4.4750 -0.4180 22 6 10.5878 -3.1434 -0.7067 23 6 10.9787 -3.2401 -2.2023 24 6 9.7549 -3.9522 -2.8301 25 6 9.3346 -4.9891 -1.7681 26 6 4.2352 -2.2038 0.1640 27 1 -0.4850 0.8401 -0.0004 28 1 3.2014 0.4303 -1.7399 29 1 5.5623 0.3723 -2.4044 30 1 7.0834 -1.2999 -1.4406 31 1 8.1148 -2.5988 -0.6664 32 1 8.4075 -3.4783 2.5403 33 1 9.8491 -4.5048 2.3495 34 1 10.4162 -2.1876 2.4676 35 1 10.5624 -5.1954 0.0081 36 1 9.9164 -2.3008 -0.5416 37 1 11.4782 -3.0505 -0.0849 38 1 11.8806 -3.8392 -2.3278 39 1 11.1103 -2.2471 -2.6322 40 1 10.0374 -4.4495 -3.7580 41 1 8.9481 -3.2415 -3.0096 42 1 9.7764 -5.9588 -1.9977 43 1 8.2483 -5.0724 -1.7359 44 1 3.8661 -2.9232 0.8799 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291269944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:51 Heat of formation + Delta-G solvation = -84.248823 kcal Electronic energy + Delta-G solvation = -25132.102727 eV Core-core repulsion = 21627.067322 eV Total energy + Delta-G solvation = -3505.035404 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.13257 -38.45148 -37.16086 -36.45918 -34.01475 -33.64045 -31.20900 -30.16187 -29.57188 -28.70126 -27.11231 -25.21712 -23.51545 -21.92087 -20.90917 -20.67781 -19.96358 -19.29333 -17.99159 -17.37699 -16.45738 -16.22028 -15.80879 -15.39943 -14.84938 -14.65308 -14.40966 -14.11745 -13.72148 -13.64188 -13.22991 -13.02875 -12.98019 -12.72513 -12.70717 -12.34516 -12.00266 -11.61688 -11.16163 -11.05578 -10.98768 -10.91300 -10.78214 -10.74486 -10.60978 -10.51117 -10.50518 -10.01159 -9.96705 -9.70791 -9.40246 -9.12037 -8.76265 -7.85441 -7.74578 -6.99921 -4.54603 1.93369 2.52716 3.05902 3.17759 3.26493 3.53732 3.63179 3.93757 4.24608 4.45957 4.49344 4.54776 4.65638 5.05990 5.19427 5.30697 5.32592 5.36386 5.41294 5.50514 5.56806 5.62664 5.67591 5.75447 5.83457 5.87521 5.91070 5.96294 6.05393 6.08899 6.24436 6.32090 6.38502 6.42304 6.67595 6.68996 6.80798 6.99403 7.22524 7.42387 7.51279 7.55335 7.76187 7.84635 8.05329 8.28917 8.54191 8.70789 8.75781 10.02350 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.003701 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.214775 B = 7563.734742 C = 7855.385658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.084 3.916 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.444 4.444 8 H 0.093 0.907 9 C 0.082 3.918 10 C -0.221 4.221 11 C -0.084 4.084 12 C -0.213 4.213 13 C -0.108 4.108 14 C 0.563 3.437 15 O -0.553 6.553 16 N -0.717 5.717 17 C 0.154 3.846 18 H 0.097 0.903 19 C 0.063 3.937 20 O -0.560 6.560 21 C -0.095 4.095 22 C -0.101 4.101 23 C -0.132 4.132 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.137 4.137 27 H 0.286 0.714 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.402 0.598 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.370 0.630 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.034 -3.973 -1.476 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.167 1.167 7 C -0.472 4.472 8 H 0.111 0.889 9 C 0.079 3.921 10 C -0.241 4.241 11 C -0.102 4.102 12 C -0.233 4.233 13 C -0.111 4.111 14 C 0.353 3.647 15 O -0.432 6.432 16 N -0.372 5.372 17 C 0.048 3.952 18 H 0.115 0.885 19 C -0.016 4.016 20 O -0.365 6.365 21 C -0.114 4.114 22 C -0.139 4.139 23 C -0.169 4.169 24 C -0.163 4.163 25 C -0.162 4.162 26 C -0.157 4.157 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.240 0.760 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.216 0.784 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 19.279 -4.606 -1.499 19.878 hybrid contribution 0.461 1.134 0.295 1.259 sum 19.740 -3.471 -1.204 20.079 Atomic orbital electron populations 1.69696 1.08093 1.30350 1.34701 1.26157 0.94738 1.01721 0.90917 0.86320 0.81380 0.79764 0.78869 1.19547 1.21666 1.16712 1.19514 0.92956 0.96323 1.38393 0.88875 1.17693 0.93139 0.91070 0.90187 1.21177 0.95687 1.04261 1.02930 1.20513 0.93735 0.97386 0.98555 1.20388 0.97895 1.00626 1.04440 1.19435 0.94254 0.96988 1.00402 1.18811 0.81554 0.83817 0.80489 1.90682 1.77084 1.40791 1.34672 1.45980 1.08687 1.35532 1.46954 1.21013 0.90049 0.92656 0.91461 0.88516 1.22624 0.93895 0.87580 0.97492 1.86636 1.69262 1.44864 1.35757 1.22006 0.95835 0.98407 0.95120 1.22325 1.00393 0.96808 0.94365 1.22612 0.97683 1.00127 0.96517 1.22363 0.98002 0.98111 0.97813 1.22225 1.01500 0.98473 0.93973 1.21267 0.91107 1.01963 1.01374 0.90343 0.87915 0.88314 0.88699 0.75985 0.92960 0.93342 0.78372 0.90290 0.90527 0.91277 0.92001 0.91812 0.92031 0.91474 0.92026 0.91225 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.30 13.93 55.55 0.77 -20.52 16 2 C 0.08 2.18 5.40 -17.34 -0.09 2.09 16 3 Si 0.91 20.48 24.52 -169.99 -4.17 16.31 16 4 H -0.27 -5.81 6.71 56.52 0.38 -5.43 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.24 -5.64 6.86 56.52 0.39 -5.25 16 7 C -0.44 -12.00 9.57 -37.73 -0.36 -12.36 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 C 0.08 2.08 5.10 -106.87 -0.55 1.54 16 10 C -0.22 -5.19 7.17 -38.81 -0.28 -5.47 16 11 C -0.08 -1.72 10.01 -39.72 -0.40 -2.12 16 12 C -0.21 -4.20 9.55 -38.92 -0.37 -4.57 16 13 C -0.11 -2.32 5.87 -105.04 -0.62 -2.94 16 14 C 0.56 11.04 7.74 -12.31 -0.10 10.95 16 15 O -0.55 -12.27 16.00 5.33 0.09 -12.19 16 16 N -0.72 -10.82 4.14 -54.74 -0.23 -11.04 16 17 C 0.15 1.93 2.06 -67.93 -0.14 1.79 16 18 H 0.10 1.33 7.58 -51.93 -0.39 0.94 16 19 C 0.06 0.72 6.85 37.16 0.25 0.97 16 20 O -0.56 -5.75 9.88 -35.23 -0.35 -6.09 16 21 C -0.09 -0.96 2.80 -89.50 -0.25 -1.21 16 22 C -0.10 -1.01 4.27 -25.07 -0.11 -1.12 16 23 C -0.13 -1.20 6.91 -24.74 -0.17 -1.37 16 24 C -0.13 -1.22 6.83 -25.08 -0.17 -1.40 16 25 C -0.12 -1.28 6.19 -25.61 -0.16 -1.44 16 26 C -0.14 -3.32 9.34 -38.44 -0.36 -3.68 16 27 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 28 H 0.10 2.39 4.72 -52.49 -0.25 2.14 16 29 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.09 1.56 6.38 -52.48 -0.33 1.22 16 31 H 0.40 5.67 4.85 -40.82 -0.20 5.47 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.37 2.41 9.12 45.56 0.42 2.83 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.89 5.30 -51.93 -0.28 0.61 16 37 H 0.07 0.67 7.55 -51.93 -0.39 0.28 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.85 7.38 -51.93 -0.38 0.47 16 44 H 0.11 2.84 7.64 -52.49 -0.40 2.44 16 LS Contribution 344.84 15.07 5.20 5.20 Total: -1.00 -29.28 344.84 -8.16 -37.44 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -5.61 Total: 11.25 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -3.86 Total: -20.35 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.55 Total: -31.57 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.26 Total: -18.28 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.17 Total: 16.31 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.28 -8.16 -37.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291269944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.811 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds