Wall clock time and date at job start Tue Mar 31 2020 08:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00018 * 2 1 4 4 H 1.48507 * 109.46802 * 240.00095 * 3 2 1 5 5 H 1.48497 * 109.47084 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47146 * 120.00153 * 3 2 1 7 7 C 1.37883 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99551 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46993 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47341 * 179.97438 * 10 9 7 12 12 O 1.21295 * 119.99376 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00029 * 180.02562 * 11 10 9 14 14 C 1.40129 * 119.99524 * 175.90958 * 13 11 10 15 15 C 1.38727 * 120.09188 * 28.40937 * 14 13 11 16 16 C 1.38195 * 119.98182 * 180.26962 * 15 14 13 17 17 C 1.38271 * 120.16574 * 359.74928 * 16 15 14 18 18 C 1.38242 * 120.18256 * 359.97438 * 17 16 15 19 19 C 1.38555 * 120.01089 * 0.02562 * 18 17 16 20 20 O 1.35978 * 120.08027 * 179.97438 * 19 18 17 21 21 C 1.42897 * 117.00020 * 5.35297 * 20 19 18 22 22 C 1.54896 * 110.75493 * 156.21849 * 21 20 19 23 23 C 1.54266 * 104.31299 * 156.32350 * 22 21 20 24 24 C 1.53871 * 106.59619 * 336.32341 * 23 22 21 25 25 C 1.54263 * 106.60299 * 0.02562 * 24 23 22 26 26 H 0.96998 * 120.00184 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47123 * 60.00014 * 9 7 2 28 28 H 1.08995 * 109.46974 * 299.99990 * 9 7 2 29 29 H 1.08998 * 109.47282 * 59.99979 * 10 9 7 30 30 H 1.08999 * 109.47288 * 300.00504 * 10 9 7 31 31 H 0.96998 * 119.99983 * 355.91177 * 13 11 10 32 32 H 1.08005 * 120.00513 * 0.02562 * 15 14 13 33 33 H 1.08004 * 119.91321 * 179.76851 * 16 15 14 34 34 H 1.08007 * 119.91269 * 180.02562 * 17 16 15 35 35 H 1.08000 * 119.99623 * 180.02562 * 18 17 16 36 36 H 1.09003 * 110.81784 * 32.88440 * 21 20 19 37 37 H 1.09000 * 110.48715 * 37.57605 * 22 21 20 38 38 H 1.08997 * 110.48378 * 275.06720 * 22 21 20 39 39 H 1.08996 * 110.03050 * 95.60522 * 23 22 21 40 40 H 1.08997 * 110.02850 * 217.03919 * 23 22 21 41 41 H 1.09003 * 110.03285 * 119.28640 * 24 23 22 42 42 H 1.09004 * 110.02971 * 240.66663 * 24 23 22 43 43 H 1.08998 * 110.48712 * 142.28981 * 25 24 23 44 44 H 1.09002 * 110.48490 * 264.79831 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9673 0.0001 12 8 0.2788 -4.9672 0.0000 13 7 2.1656 -6.1344 0.0007 14 6 1.4676 -7.3463 0.0879 15 6 0.1727 -7.4400 -0.4011 16 6 -0.5156 -8.6347 -0.3089 17 6 0.0849 -9.7400 0.2652 18 6 1.3769 -9.6560 0.7495 19 6 2.0739 -8.4618 0.6610 20 8 3.3447 -8.3774 1.1374 21 6 3.9423 -9.5866 1.6093 22 6 5.4874 -9.4935 1.5534 23 6 5.9694 -10.5194 2.5998 24 6 4.8139 -10.7041 3.5989 25 6 3.6697 -9.7846 3.1244 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5568 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8718 -3.6044 0.8894 30 1 2.8719 -3.6044 -0.8905 31 1 3.1337 -6.1355 -0.0591 32 1 -0.2987 -6.5782 -0.8502 33 1 -1.5250 -8.7054 -0.6866 34 1 -0.4567 -10.6719 0.3348 35 1 1.8432 -10.5213 1.1970 36 1 3.5860 -10.4435 1.0377 37 1 5.8191 -8.4904 1.8215 38 1 5.8500 -9.7617 0.5611 39 1 6.1987 -11.4681 2.1145 40 1 6.8518 -10.1403 3.1153 41 1 4.4824 -11.7425 3.5986 42 1 5.1358 -10.4155 4.5995 43 1 2.7042 -10.2663 3.2787 44 1 3.7063 -8.8291 3.6478 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291557838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:42 Heat of formation + Delta-G solvation = -65.572425 kcal Electronic energy + Delta-G solvation = -24128.671844 eV Core-core repulsion = 20624.446309 eV Total energy + Delta-G solvation = -3504.225535 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.74906 -39.44895 -37.95256 -36.33285 -34.43340 -33.48734 -31.21163 -30.15429 -29.43189 -29.07009 -27.96486 -25.71435 -23.38885 -22.52917 -21.40306 -20.77031 -20.54707 -19.59400 -18.54502 -17.22925 -16.92210 -16.17257 -15.99007 -15.59095 -15.11810 -14.92131 -14.82894 -14.43348 -14.21156 -14.11244 -13.61012 -13.25251 -12.93742 -12.83047 -12.53918 -12.17879 -12.07406 -11.72531 -11.62900 -11.57017 -11.50208 -11.16065 -10.91619 -10.87489 -10.80472 -10.74910 -10.62293 -10.21475 -9.96912 -9.65315 -9.16979 -9.01673 -8.50280 -8.32175 -7.67163 -5.96091 -4.00608 1.36561 1.44736 2.97905 3.11666 3.35013 3.38929 3.40491 3.45747 3.88118 4.13501 4.22376 4.47659 4.48378 4.71650 4.83121 4.98467 5.02767 5.08486 5.11264 5.19418 5.23103 5.38892 5.43711 5.45259 5.46568 5.52596 5.64306 5.72056 5.77522 5.83519 5.92837 5.97161 6.15008 6.18707 6.26257 6.32764 6.57183 6.69953 6.85901 6.95722 7.41779 7.73349 7.78066 7.84520 8.06092 8.37311 8.64849 9.07224 9.62905 11.14844 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016439 B = 0.003002 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.843632 B = 9324.735583 C =10707.191784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.510 3.490 12 O -0.516 6.516 13 N -0.674 5.674 14 C 0.132 3.868 15 C -0.099 4.099 16 C -0.135 4.135 17 C -0.109 4.109 18 C -0.192 4.192 19 C 0.093 3.907 20 O -0.306 6.306 21 C 0.079 3.921 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.148 4.148 26 H 0.262 0.738 27 H 0.025 0.975 28 H 0.024 0.976 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.411 0.589 32 H 0.158 0.842 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.390 -25.551 3.250 27.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.168 4.168 11 C 0.300 3.700 12 O -0.391 6.391 13 N -0.319 5.319 14 C 0.036 3.964 15 C -0.119 4.119 16 C -0.154 4.154 17 C -0.128 4.128 18 C -0.212 4.212 19 C 0.046 3.954 20 O -0.220 6.220 21 C 0.022 3.978 22 C -0.157 4.157 23 C -0.160 4.160 24 C -0.161 4.161 25 C -0.185 4.185 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.247 0.753 32 H 0.175 0.825 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.510 -25.158 3.284 26.761 hybrid contribution 0.869 0.599 0.120 1.062 sum 9.379 -24.560 3.404 26.509 Atomic orbital electron populations 1.69982 1.06057 1.26739 1.50038 1.25020 0.94830 0.99227 0.95258 0.86643 0.79544 0.83133 0.78561 1.20230 1.21280 1.20238 1.21173 0.92923 0.90964 1.51618 0.92605 1.18907 0.93124 0.89257 0.98717 1.21901 1.00822 0.91233 1.02862 1.21813 0.88772 0.85410 0.74025 1.90606 1.14368 1.87080 1.47013 1.43750 1.10814 1.03872 1.73508 1.17294 0.93646 0.84815 1.00661 1.21558 0.92856 0.99211 0.98299 1.21017 1.00306 0.92535 1.01564 1.20857 0.94361 0.98641 0.98958 1.20984 0.96520 0.96672 1.06988 1.18700 0.85202 0.94182 0.97302 1.86056 1.25366 1.34053 1.76510 1.23518 0.93534 0.86290 0.94413 1.22397 0.92500 1.00953 0.99845 1.22071 0.98446 0.99009 0.96471 1.22045 0.95078 0.99609 0.99330 1.22931 0.98964 1.01094 0.95539 0.92867 0.95699 0.95729 0.89850 0.89869 0.75333 0.82494 0.85735 0.86133 0.85488 0.90091 0.90050 0.90800 0.91477 0.91091 0.91602 0.91279 0.91132 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.61 5.64 -27.88 -0.16 -2.77 16 11 C 0.51 10.01 7.71 -10.99 -0.08 9.93 16 12 O -0.52 -11.91 13.05 5.54 0.07 -11.84 16 13 N -0.67 -10.75 5.26 -9.74 -0.05 -10.80 16 14 C 0.13 2.07 6.43 -83.49 -0.54 1.54 16 15 C -0.10 -1.58 8.76 -39.42 -0.35 -1.93 16 16 C -0.14 -1.77 10.04 -39.59 -0.40 -2.17 16 17 C -0.11 -1.24 10.04 -39.57 -0.40 -1.63 16 18 C -0.19 -2.21 8.92 -39.46 -0.35 -2.56 16 19 C 0.09 1.25 6.69 -39.07 -0.26 0.99 16 20 O -0.31 -3.73 9.39 -19.67 -0.18 -3.91 16 21 C 0.08 0.71 2.69 -24.56 -0.07 0.64 16 22 C -0.12 -0.89 6.54 -25.07 -0.16 -1.05 16 23 C -0.12 -0.73 6.80 -25.61 -0.17 -0.90 16 24 C -0.12 -0.77 6.80 -25.62 -0.17 -0.95 16 25 C -0.15 -1.22 6.42 -24.90 -0.16 -1.38 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 31 H 0.41 5.46 8.42 -40.82 -0.34 5.11 16 32 H 0.16 2.85 5.73 -52.48 -0.30 2.55 16 33 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 34 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.13 1.15 5.59 -52.49 -0.29 0.85 16 36 H 0.08 0.65 6.25 -51.93 -0.32 0.33 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.57 7.75 -51.93 -0.40 0.17 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -33.32 359.54 -9.53 -42.85 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.70 Total: 3.36 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -3.80 Total: -15.07 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.69 Total: -37.50 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.11 Total: -15.75 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.32 -9.53 -42.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291557838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.724 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds