Wall clock time and date at job start Tue Mar 31 2020 08:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00018 * 2 1 4 4 H 1.48507 * 109.46802 * 240.00095 * 3 2 1 5 5 H 1.48497 * 109.47084 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47146 * 120.00153 * 3 2 1 7 7 C 1.37883 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99551 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46993 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47341 * 179.97438 * 10 9 7 12 12 O 1.21295 * 119.99376 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00029 * 180.02562 * 11 10 9 14 14 C 1.40129 * 119.99524 * 175.90958 * 13 11 10 15 15 C 1.38727 * 120.09188 * 28.40937 * 14 13 11 16 16 C 1.38195 * 119.98182 * 180.26962 * 15 14 13 17 17 C 1.38271 * 120.16574 * 359.74928 * 16 15 14 18 18 C 1.38242 * 120.18256 * 359.97438 * 17 16 15 19 19 C 1.38555 * 120.01089 * 0.02562 * 18 17 16 20 20 O 1.35978 * 120.08027 * 179.97438 * 19 18 17 21 21 C 1.42897 * 117.00020 * 5.35297 * 20 19 18 22 22 C 1.54896 * 110.75493 * 156.21849 * 21 20 19 23 23 C 1.54266 * 104.31299 * 156.32350 * 22 21 20 24 24 C 1.53871 * 106.59619 * 336.32341 * 23 22 21 25 25 C 1.54263 * 106.60299 * 0.02562 * 24 23 22 26 26 H 0.96998 * 120.00184 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47123 * 60.00014 * 9 7 2 28 28 H 1.08995 * 109.46974 * 299.99990 * 9 7 2 29 29 H 1.08998 * 109.47282 * 59.99979 * 10 9 7 30 30 H 1.08999 * 109.47288 * 300.00504 * 10 9 7 31 31 H 0.96998 * 119.99983 * 355.91177 * 13 11 10 32 32 H 1.08005 * 120.00513 * 0.02562 * 15 14 13 33 33 H 1.08004 * 119.91321 * 179.76851 * 16 15 14 34 34 H 1.08007 * 119.91269 * 180.02562 * 17 16 15 35 35 H 1.08000 * 119.99623 * 180.02562 * 18 17 16 36 36 H 1.09003 * 110.81784 * 32.88440 * 21 20 19 37 37 H 1.09000 * 110.48715 * 37.57605 * 22 21 20 38 38 H 1.08997 * 110.48378 * 275.06720 * 22 21 20 39 39 H 1.08996 * 110.03050 * 95.60522 * 23 22 21 40 40 H 1.08997 * 110.02850 * 217.03919 * 23 22 21 41 41 H 1.09003 * 110.03285 * 119.28640 * 24 23 22 42 42 H 1.09004 * 110.02971 * 240.66663 * 24 23 22 43 43 H 1.08998 * 110.48712 * 142.28981 * 25 24 23 44 44 H 1.09002 * 110.48490 * 264.79831 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9673 0.0001 12 8 0.2788 -4.9672 0.0000 13 7 2.1656 -6.1344 0.0007 14 6 1.4676 -7.3463 0.0879 15 6 0.1727 -7.4400 -0.4011 16 6 -0.5156 -8.6347 -0.3089 17 6 0.0849 -9.7400 0.2652 18 6 1.3769 -9.6560 0.7495 19 6 2.0739 -8.4618 0.6610 20 8 3.3447 -8.3774 1.1374 21 6 3.9423 -9.5866 1.6093 22 6 5.4874 -9.4935 1.5534 23 6 5.9694 -10.5194 2.5998 24 6 4.8139 -10.7041 3.5989 25 6 3.6697 -9.7846 3.1244 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5568 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8718 -3.6044 0.8894 30 1 2.8719 -3.6044 -0.8905 31 1 3.1337 -6.1355 -0.0591 32 1 -0.2987 -6.5782 -0.8502 33 1 -1.5250 -8.7054 -0.6866 34 1 -0.4567 -10.6719 0.3348 35 1 1.8432 -10.5213 1.1970 36 1 3.5860 -10.4435 1.0377 37 1 5.8191 -8.4904 1.8215 38 1 5.8500 -9.7617 0.5611 39 1 6.1987 -11.4681 2.1145 40 1 6.8518 -10.1403 3.1153 41 1 4.4824 -11.7425 3.5986 42 1 5.1358 -10.4155 4.5995 43 1 2.7042 -10.2663 3.2787 44 1 3.7063 -8.8291 3.6478 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291557838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:42 Heat of formation + Delta-G solvation = -85.450746 kcal Electronic energy + Delta-G solvation = -24129.533832 eV Core-core repulsion = 20624.446309 eV Total energy + Delta-G solvation = -3505.087524 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.86399 -40.64729 -38.93616 -37.12076 -35.83661 -35.54748 -33.13956 -31.19976 -30.58884 -29.64786 -28.71558 -27.64517 -24.69225 -23.79404 -22.82505 -21.61393 -21.19208 -21.02368 -19.53590 -18.81984 -18.25129 -17.64884 -16.97328 -16.69147 -16.49195 -16.34078 -15.87734 -15.78214 -15.27695 -15.19472 -14.80277 -14.35239 -14.21555 -14.18745 -13.78806 -13.42307 -13.26516 -13.15040 -12.78793 -12.64423 -12.52103 -12.49664 -12.12528 -12.07963 -11.94224 -11.65869 -11.58975 -11.51367 -11.45396 -11.32308 -11.27423 -10.62239 -10.56369 -9.57190 -8.79136 -8.18627 -6.32807 0.27368 0.41554 1.41727 1.46380 1.54066 1.62158 2.02021 2.20915 2.43651 2.81983 3.14334 3.53372 3.65229 3.82449 3.88059 3.94226 4.03686 4.19032 4.35998 4.42521 4.44111 4.47970 4.49250 4.52251 4.56092 4.63243 4.72648 4.83202 4.89287 5.01989 5.06319 5.09477 5.19938 5.25006 5.26177 5.32563 5.44979 5.46953 5.51682 5.60497 5.60803 5.83421 5.87863 6.16172 6.44425 6.47541 6.84748 7.18663 7.37273 8.93881 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016439 B = 0.003002 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.843632 B = 9324.735583 C =10707.191784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.044 3.956 10 C -0.116 4.116 11 C 0.510 3.490 12 O -0.562 6.562 13 N -0.656 5.656 14 C 0.095 3.905 15 C -0.123 4.123 16 C -0.144 4.144 17 C -0.094 4.094 18 C -0.188 4.188 19 C 0.098 3.902 20 O -0.318 6.318 21 C 0.070 3.930 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.148 4.148 26 H 0.263 0.737 27 H -0.014 1.014 28 H -0.017 1.017 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.424 0.576 32 H 0.124 0.876 33 H 0.141 0.859 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.888 -27.880 3.807 30.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.094 0.906 9 C 0.006 3.994 10 C -0.156 4.156 11 C 0.301 3.699 12 O -0.440 6.440 13 N -0.301 5.301 14 C 0.000 4.000 15 C -0.143 4.143 16 C -0.162 4.162 17 C -0.113 4.113 18 C -0.207 4.207 19 C 0.050 3.950 20 O -0.233 6.233 21 C 0.014 3.986 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.186 4.186 26 H 0.072 0.928 27 H 0.005 0.995 28 H 0.001 0.999 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.262 0.738 32 H 0.142 0.858 33 H 0.158 0.842 34 H 0.177 0.823 35 H 0.177 0.823 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.067 -27.541 3.844 29.929 hybrid contribution 0.079 1.168 -0.028 1.171 sum 11.146 -26.373 3.817 28.885 Atomic orbital electron populations 1.70166 1.08291 1.27917 1.51312 1.26134 0.95733 1.03930 0.94566 0.85370 0.78063 0.77314 0.79480 1.18644 1.21272 1.18740 1.21674 0.94014 0.91578 1.51060 0.90610 1.18676 0.93598 0.92163 0.94915 1.21656 0.99436 0.89391 1.05090 1.21580 0.88100 0.86302 0.73960 1.90606 1.16152 1.87748 1.49463 1.43365 1.11262 1.03215 1.72259 1.17473 0.94125 0.85237 1.03131 1.21431 0.93643 0.99559 0.99703 1.21248 1.01043 0.92096 1.01863 1.21292 0.94257 0.99204 0.96504 1.21382 0.96491 0.96758 1.06034 1.18736 0.85854 0.93904 0.96474 1.86053 1.24739 1.36137 1.76331 1.23849 0.94289 0.85586 0.94871 1.22433 0.91428 1.00931 1.00901 1.22078 0.98377 0.99183 0.95961 1.22048 0.94362 0.99877 0.99428 1.22929 1.00111 1.00665 0.94917 0.92811 0.99548 0.99852 0.87709 0.87324 0.73831 0.85797 0.84152 0.82296 0.82345 0.88555 0.91244 0.89996 0.89987 0.90629 0.90135 0.91108 0.90746 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.99 13.29 21.45 0.28 -59.71 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.11 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.55 -31.45 9.11 25.60 0.23 -31.21 16 8 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 9 C 0.04 2.50 4.26 29.85 0.13 2.62 16 10 C -0.12 -4.83 5.64 29.85 0.17 -4.66 16 11 C 0.51 21.06 7.71 87.66 0.68 21.74 16 12 O -0.56 -28.01 13.05 -3.08 -0.04 -28.05 16 13 N -0.66 -21.42 5.26 -303.13 -1.59 -23.01 16 14 C 0.10 3.05 6.43 38.18 0.25 3.29 16 15 C -0.12 -4.12 8.76 22.38 0.20 -3.92 16 16 C -0.14 -3.67 10.04 22.27 0.22 -3.45 16 17 C -0.09 -1.85 10.04 22.28 0.22 -1.63 16 18 C -0.19 -3.77 8.92 22.35 0.20 -3.57 16 19 C 0.10 2.51 6.69 22.60 0.15 2.66 16 20 O -0.32 -7.32 9.39 -93.31 -0.88 -8.19 16 21 C 0.07 1.08 2.69 32.00 0.09 1.17 16 22 C -0.12 -1.52 6.54 31.67 0.21 -1.31 16 23 C -0.12 -1.07 6.80 31.32 0.21 -0.85 16 24 C -0.12 -1.17 6.80 31.32 0.21 -0.96 16 25 C -0.15 -2.14 6.42 31.78 0.20 -1.94 16 26 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 27 H -0.01 -0.88 8.10 -2.39 -0.02 -0.90 16 28 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 29 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 30 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 31 H 0.42 11.18 8.42 -92.71 -0.78 10.40 16 32 H 0.12 4.96 5.73 -2.91 -0.02 4.94 16 33 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.16 2.15 5.59 -2.91 -0.02 2.14 16 36 H 0.10 1.20 6.25 -2.39 -0.01 1.19 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.52 8.14 -2.39 -0.02 0.51 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.07 1.00 7.75 -2.39 -0.02 0.98 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -77.02 359.54 3.85 -73.17 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.22 Total: 20.98 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 3.83 Total: -21.92 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -1.31 Total: -82.72 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.92 Total: -36.25 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -77.02 3.85 -73.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291557838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.284 kcal (2) G-P(sol) polarization free energy of solvation -77.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds