Wall clock time and date at job start Tue Mar 31 2020 08:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99936 * 2 1 4 4 H 1.48501 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47362 * 299.99620 * 3 2 1 6 6 H 1.48506 * 109.47093 * 59.99529 * 3 2 1 7 7 C 1.37873 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00221 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99717 * 359.73530 * 7 2 1 10 10 C 1.53002 * 109.46968 * 180.27262 * 9 7 2 11 11 C 1.50703 * 109.47005 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00309 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99955 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00042 * 175.12185 * 13 11 10 15 15 H 1.09007 * 109.46894 * 326.69453 * 14 13 11 16 16 C 1.50695 * 109.47063 * 206.69248 * 14 13 11 17 17 C 1.38228 * 120.00151 * 319.72498 * 16 14 13 18 18 C 1.38237 * 120.00229 * 179.78766 * 17 16 14 19 19 C 1.38235 * 119.99639 * 0.44277 * 18 17 16 20 20 C 1.38240 * 120.00029 * 359.81214 * 19 18 17 21 21 C 1.38228 * 119.99956 * 359.97438 * 20 19 18 22 22 C 1.53004 * 109.47000 * 86.68892 * 14 13 11 23 23 H 1.08998 * 109.82487 * 304.86825 * 22 14 13 24 24 C 1.54383 * 109.82712 * 183.88245 * 22 14 13 25 25 C 1.55311 * 102.25208 * 219.13255 * 24 22 14 26 26 C 1.54940 * 100.93875 * 34.13816 * 25 24 22 27 27 O 1.43239 * 109.82330 * 65.75327 * 22 14 13 28 28 H 0.96999 * 120.00157 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47124 * 300.26652 * 9 7 2 30 30 H 1.08996 * 109.47796 * 60.27114 * 9 7 2 31 31 H 1.08999 * 109.47141 * 299.99347 * 10 9 7 32 32 H 1.09004 * 109.47336 * 59.99887 * 10 9 7 33 33 H 0.96994 * 119.99847 * 355.12339 * 13 11 10 34 34 H 1.08005 * 120.00217 * 0.02562 * 17 16 14 35 35 H 1.07998 * 120.00360 * 180.28000 * 18 17 16 36 36 H 1.08002 * 120.00252 * 179.83390 * 19 18 17 37 37 H 1.07999 * 119.99552 * 179.97438 * 20 19 18 38 38 H 1.08006 * 119.99718 * 179.97438 * 21 20 19 39 39 H 1.08998 * 110.85052 * 337.32738 * 24 22 14 40 40 H 1.09001 * 110.84367 * 100.94355 * 24 22 14 41 41 H 1.09002 * 111.12380 * 276.22095 * 25 24 22 42 42 H 1.08999 * 111.12081 * 152.05702 * 25 24 22 43 43 H 1.09005 * 110.30959 * 204.63923 * 26 25 24 44 44 H 1.09002 * 110.39790 * 82.51593 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0071 10 6 2.2453 -3.6620 0.0132 11 6 1.4919 -4.9671 0.0205 12 8 0.2791 -4.9672 0.0212 13 7 2.1658 -6.1343 0.0262 14 6 1.4374 -7.4002 0.1411 15 1 0.5561 -7.2568 0.7664 16 6 2.3323 -8.4398 0.7649 17 6 3.6653 -8.5096 0.4059 18 6 4.4873 -9.4604 0.9814 19 6 3.9740 -10.3475 1.9091 20 6 2.6396 -10.2811 2.2641 21 6 1.8188 -9.3274 1.6919 22 6 1.0049 -7.8678 -1.2501 23 1 0.4285 -7.0837 -1.7410 24 6 0.1530 -9.1498 -1.1302 25 6 0.6445 -9.9866 -2.3428 26 6 2.1379 -9.5773 -2.3965 27 8 2.1591 -8.1869 -2.0359 28 1 -0.4850 0.8400 -0.0004 29 1 0.6244 -2.5523 0.8974 30 1 0.6245 -2.5615 -0.8825 31 1 2.8720 -3.6089 -0.8770 32 1 2.8720 -3.5997 0.9030 33 1 3.1331 -6.1362 -0.0458 34 1 4.0657 -7.8187 -0.3214 35 1 5.5299 -9.5120 0.7043 36 1 4.6155 -11.0921 2.3567 37 1 2.2386 -10.9744 2.9886 38 1 0.7762 -9.2759 1.9691 39 1 0.3595 -9.6665 -0.1930 40 1 -0.9085 -8.9201 -1.2222 41 1 0.1248 -9.6974 -3.2562 42 1 0.5364 -11.0544 -2.1527 43 1 2.5314 -9.7128 -3.4040 44 1 2.7181 -10.1621 -1.6827 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291695683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:51 Heat of formation + Delta-G solvation = -69.608901 kcal Electronic energy + Delta-G solvation = -24864.940059 eV Core-core repulsion = 21360.539489 eV Total energy + Delta-G solvation = -3504.400570 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.66391 -38.72403 -38.67740 -34.89432 -33.40317 -32.41002 -31.59312 -31.03412 -30.61276 -29.48223 -26.26385 -24.91756 -22.94619 -22.45221 -21.89944 -21.54906 -20.22605 -19.54167 -17.56755 -16.72921 -16.64115 -16.26775 -15.83132 -15.61828 -15.14619 -15.00122 -14.64736 -14.38664 -14.03412 -13.62551 -13.58799 -13.38324 -13.12070 -12.68685 -12.50671 -12.23428 -12.15013 -11.86506 -11.50067 -11.47794 -11.27693 -11.15371 -11.10906 -10.91529 -10.84419 -10.54680 -9.91539 -9.82319 -9.62446 -9.16764 -9.07552 -9.03160 -8.87014 -8.57965 -8.28669 -5.92909 -3.96850 1.14585 1.23518 3.27886 3.35015 3.40163 3.42840 3.46252 3.67440 3.87216 4.32036 4.49530 4.51008 4.67506 4.72219 4.75069 4.82429 4.96270 5.06091 5.14178 5.29019 5.32904 5.42157 5.43672 5.49615 5.55431 5.57833 5.65216 5.74622 5.79072 5.82212 5.90700 6.05956 6.27574 6.29231 6.31272 6.33943 6.41438 6.74987 6.81156 6.94825 7.00732 7.78648 7.90909 7.94899 8.11049 8.42846 8.82154 9.12017 9.66527 11.18107 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.019875 B = 0.003195 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.454923 B = 8762.026971 C = 9375.983703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.512 3.488 12 O -0.537 6.537 13 N -0.731 5.731 14 C 0.176 3.824 15 H 0.102 0.898 16 C -0.081 4.081 17 C -0.095 4.095 18 C -0.121 4.121 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.112 4.112 22 C 0.075 3.925 23 H 0.092 0.908 24 C -0.153 4.153 25 C -0.154 4.154 26 C 0.051 3.949 27 O -0.368 6.368 28 H 0.260 0.740 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.398 0.602 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.559 -26.168 -0.049 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.563 4.563 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.301 3.699 12 O -0.412 6.412 13 N -0.385 5.385 14 C 0.071 3.929 15 H 0.119 0.881 16 C -0.082 4.082 17 C -0.113 4.113 18 C -0.139 4.139 19 C -0.141 4.141 20 C -0.139 4.139 21 C -0.131 4.131 22 C 0.016 3.984 23 H 0.110 0.890 24 C -0.191 4.191 25 C -0.191 4.191 26 C -0.026 4.026 27 O -0.287 6.287 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.234 0.766 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.672 -25.861 -0.082 26.476 hybrid contribution 0.751 0.675 0.051 1.011 sum 6.422 -25.186 -0.032 25.992 Atomic orbital electron populations 1.70010 1.06038 1.26404 1.50439 1.25024 0.94824 0.99212 0.95367 0.86543 0.80036 0.83876 0.77546 1.19746 1.21038 1.21052 1.21272 0.92983 0.91028 1.51059 0.92561 1.18898 0.93171 0.89369 0.98588 1.21867 1.00736 0.91866 1.02514 1.21581 0.88653 0.85608 0.74025 1.90652 1.14428 1.87650 1.48509 1.46220 1.10484 1.04760 1.77001 1.20140 0.94808 0.82705 0.95288 0.88065 1.19857 0.94612 0.96891 0.96847 1.21010 0.93067 0.98404 0.98859 1.21157 0.99744 0.95785 0.97243 1.21148 0.95528 0.99267 0.98118 1.21085 0.94000 0.98775 1.00071 1.21032 0.99959 0.95577 0.96492 1.23204 0.86533 0.97281 0.91362 0.88999 1.23216 1.00876 0.95554 0.99434 1.23220 0.96453 1.00596 0.98879 1.23340 0.95886 0.83210 1.00141 1.88444 1.44055 1.25012 1.71173 0.93056 0.95842 0.95813 0.90226 0.90250 0.76637 0.85593 0.86091 0.86313 0.86133 0.85976 0.89979 0.89806 0.90429 0.90203 0.90169 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.72 13.29 55.43 0.74 -26.98 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.53 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.72 5.64 -27.88 -0.16 -2.87 16 11 C 0.51 10.09 7.80 -10.98 -0.09 10.00 16 12 O -0.54 -12.59 15.67 5.56 0.09 -12.50 16 13 N -0.73 -11.01 4.98 -54.93 -0.27 -11.28 16 14 C 0.18 2.34 2.08 -69.08 -0.14 2.20 16 15 H 0.10 1.48 7.46 -51.92 -0.39 1.09 16 16 C -0.08 -0.91 4.22 -104.63 -0.44 -1.35 16 17 C -0.10 -0.99 7.63 -39.59 -0.30 -1.29 16 18 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 19 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 20 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 21 C -0.11 -1.11 8.13 -39.58 -0.32 -1.43 16 22 C 0.08 0.96 3.45 -26.00 -0.09 0.87 16 23 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 24 C -0.15 -1.50 6.36 -24.78 -0.16 -1.66 16 25 C -0.15 -1.30 7.16 -24.48 -0.18 -1.47 16 26 C 0.05 0.48 7.60 38.18 0.29 0.78 16 27 O -0.37 -4.62 9.42 -35.23 -0.33 -4.95 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.02 0.71 8.10 -51.93 -0.42 0.28 16 31 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.40 5.17 6.89 -40.82 -0.28 4.88 16 34 H 0.13 1.31 6.67 -52.48 -0.35 0.96 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.12 1.07 7.92 -52.48 -0.42 0.65 16 39 H 0.08 0.74 5.65 -51.93 -0.29 0.45 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 LS Contribution 359.08 15.07 5.41 5.41 Total: -1.00 -34.21 359.08 -9.44 -43.66 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.74 Total: 3.29 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -3.31 Total: -13.55 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.46 Total: -38.26 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.24 Total: -17.46 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.21 -9.44 -43.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291695683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.952 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds