Wall clock time and date at job start Tue Mar 31 2020 08:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99883 * 2 1 4 4 H 1.48491 * 109.47416 * 270.00633 * 3 2 1 5 5 H 1.48505 * 109.47087 * 30.00638 * 3 2 1 6 6 H 1.48505 * 109.46927 * 150.00065 * 3 2 1 7 7 C 1.37872 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99509 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00268 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47213 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47330 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99693 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00165 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00283 * 184.64180 * 13 11 10 15 15 H 1.09003 * 109.46904 * 321.97964 * 14 13 11 16 16 C 1.50701 * 109.47045 * 81.97206 * 14 13 11 17 17 C 1.38234 * 120.00302 * 220.00329 * 16 14 13 18 18 C 1.38230 * 119.99907 * 179.73023 * 17 16 14 19 19 C 1.38237 * 120.00352 * 0.24886 * 18 17 16 20 20 C 1.38235 * 119.99896 * 0.02562 * 19 18 17 21 21 C 1.38238 * 120.00000 * 359.97438 * 20 19 18 22 22 C 1.53001 * 109.47392 * 201.97712 * 14 13 11 23 23 H 1.08993 * 110.32935 * 181.53885 * 22 14 13 24 24 C 1.54475 * 110.37346 * 59.28473 * 22 14 13 25 25 C 1.54508 * 104.06230 * 217.19108 * 24 22 14 26 26 C 1.54483 * 104.06303 * 0.02562 * 25 24 22 27 27 O 1.44423 * 110.36757 * 303.90355 * 22 14 13 28 28 H 0.96999 * 120.00189 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47120 * 60.00326 * 9 7 2 30 30 H 1.09002 * 109.47552 * 300.00279 * 9 7 2 31 31 H 1.08994 * 109.47520 * 60.00055 * 10 9 7 32 32 H 1.09003 * 109.46985 * 300.00043 * 10 9 7 33 33 H 0.97003 * 120.00028 * 4.64800 * 13 11 10 34 34 H 1.07997 * 119.99380 * 0.02562 * 17 16 14 35 35 H 1.08004 * 119.99815 * 180.27720 * 18 17 16 36 36 H 1.07992 * 120.00291 * 180.02562 * 19 18 17 37 37 H 1.08000 * 120.00183 * 180.02562 * 20 19 18 38 38 H 1.07993 * 120.00336 * 180.02562 * 21 20 19 39 39 H 1.09001 * 110.51251 * 335.83604 * 24 22 14 40 40 H 1.08997 * 110.51325 * 98.41016 * 24 22 14 41 41 H 1.09005 * 110.51132 * 118.64130 * 25 24 22 42 42 H 1.08997 * 110.51448 * 241.21658 * 25 24 22 43 43 H 1.09005 * 110.37103 * 142.81348 * 26 25 24 44 44 H 1.08999 * 110.36860 * 265.03191 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6364 -0.0010 11 6 5.5286 -2.6365 -0.0009 12 8 6.1349 -1.5861 -0.0005 13 7 6.2025 -3.8036 -0.0003 14 6 7.6639 -3.8057 0.1024 15 1 8.0695 -2.9719 -0.4707 16 6 8.0660 -3.6643 1.5479 17 6 9.1407 -2.8656 1.8914 18 6 9.5060 -2.7316 3.2178 19 6 8.8000 -3.4003 4.2003 20 6 7.7288 -4.2035 3.8562 21 6 7.3634 -4.3376 2.5298 22 6 8.2124 -5.1214 -0.4533 23 1 9.2978 -5.1492 -0.3587 24 6 7.7967 -5.2961 -1.9308 25 6 7.5163 -6.8095 -2.0655 26 6 7.7953 -7.3701 -0.6533 27 8 7.6168 -6.2440 0.2328 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6804 0.8889 30 1 3.8746 -0.6799 -0.8911 31 1 3.6579 -3.1505 -0.8907 32 1 3.6585 -3.1501 0.8893 33 1 5.7199 -4.6423 -0.0680 34 1 9.6918 -2.3425 1.1239 35 1 10.3429 -2.1039 3.4867 36 1 9.0851 -3.2953 5.2366 37 1 7.1769 -4.7257 4.6238 38 1 6.5264 -4.9648 2.2610 39 1 6.8962 -4.7203 -2.1448 40 1 8.6077 -4.9952 -2.5939 41 1 6.4772 -6.9820 -2.3461 42 1 8.1881 -7.2587 -2.7970 43 1 7.0844 -8.1603 -0.4115 44 1 8.8162 -7.7467 -0.5894 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291695688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:54 Heat of formation + Delta-G solvation = -67.641445 kcal Electronic energy + Delta-G solvation = -24953.173084 eV Core-core repulsion = 21448.857830 eV Total energy + Delta-G solvation = -3504.315254 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.53295 -38.95211 -38.59392 -34.97304 -33.43552 -32.32864 -31.76854 -30.96515 -30.69510 -29.53438 -26.48430 -25.19285 -22.69920 -22.53175 -21.65352 -21.36381 -20.31793 -19.66635 -17.33235 -17.09715 -16.61116 -16.38228 -16.04117 -15.48759 -15.29602 -14.99017 -14.65294 -14.13075 -14.04340 -13.98535 -13.48328 -13.30173 -13.14202 -12.76316 -12.54974 -12.46574 -12.13468 -12.01468 -11.78256 -11.53091 -11.38091 -11.01205 -10.96632 -10.92160 -10.86299 -10.14492 -10.07215 -10.00607 -9.75512 -9.25230 -9.14945 -8.91849 -8.81749 -8.61558 -8.47955 -6.00459 -3.98868 1.38204 1.49687 3.14896 3.39770 3.42259 3.46439 3.58148 3.60985 3.84615 4.32049 4.38792 4.53522 4.62750 4.72385 4.90662 4.93830 4.98440 5.06507 5.15316 5.20390 5.31181 5.35237 5.36981 5.44425 5.54318 5.56963 5.60537 5.71039 5.74356 5.83183 6.01210 6.10780 6.12910 6.14542 6.49008 6.50575 6.54762 6.58014 6.74070 6.81189 7.06360 7.40032 7.47768 7.80573 7.86108 8.53336 8.71167 9.02941 9.62897 11.12444 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013281 B = 0.004147 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.800482 B = 6749.634833 C = 8007.266535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.121 4.121 11 C 0.512 3.488 12 O -0.537 6.537 13 N -0.729 5.729 14 C 0.193 3.807 15 H 0.104 0.896 16 C -0.091 4.091 17 C -0.107 4.107 18 C -0.126 4.126 19 C -0.122 4.122 20 C -0.126 4.126 21 C -0.083 4.083 22 C 0.075 3.925 23 H 0.080 0.920 24 C -0.155 4.155 25 C -0.155 4.155 26 C 0.044 3.956 27 O -0.362 6.362 28 H 0.263 0.737 29 H 0.023 0.977 30 H 0.018 0.982 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.403 0.597 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.189 -15.828 0.467 26.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.036 4.036 10 C -0.161 4.161 11 C 0.301 3.699 12 O -0.412 6.412 13 N -0.383 5.383 14 C 0.088 3.912 15 H 0.122 0.878 16 C -0.093 4.093 17 C -0.126 4.126 18 C -0.144 4.144 19 C -0.140 4.140 20 C -0.144 4.144 21 C -0.101 4.101 22 C 0.017 3.983 23 H 0.098 0.902 24 C -0.192 4.192 25 C -0.193 4.193 26 C -0.033 4.033 27 O -0.280 6.280 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.238 0.762 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 21.352 -14.928 0.679 26.062 hybrid contribution 0.246 0.447 -0.199 0.547 sum 21.598 -14.481 0.480 26.007 Atomic orbital electron populations 1.69913 1.06288 1.26923 1.51211 1.24961 0.94687 0.99186 0.94355 0.86808 0.80674 0.83445 0.78709 1.20267 1.21462 1.18520 1.21118 0.89317 0.94535 1.51183 0.90960 1.19357 0.96349 0.90242 0.97603 1.21658 0.88006 1.03198 1.03260 1.21538 0.91518 0.82782 0.74089 1.90648 1.70722 1.31416 1.48453 1.46113 1.05711 1.09641 1.76876 1.19781 0.82462 0.96312 0.92669 0.87842 1.20088 0.96150 0.97608 0.95413 1.20969 0.97034 0.98132 0.96460 1.21044 1.00275 1.00079 0.92970 1.21114 0.96226 0.97572 0.99098 1.21138 0.97473 0.99427 0.96323 1.20942 0.98957 0.97966 0.92226 1.23264 0.97570 0.86632 0.90883 0.90172 1.23026 1.03342 0.96765 0.96108 1.22937 1.03020 0.95428 0.97879 1.23399 1.01137 0.90154 0.88595 1.89171 1.79643 1.17534 1.41690 0.92756 0.95869 0.96330 0.89771 0.89618 0.76173 0.86315 0.86341 0.86462 0.86292 0.85879 0.89625 0.90342 0.90392 0.90636 0.88967 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.90 27.47 -169.99 -4.67 18.23 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.26 -6.83 6.54 56.52 0.37 -6.46 16 7 C -0.52 -15.16 9.66 -34.45 -0.33 -15.50 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.00 0.06 3.33 -27.89 -0.09 -0.03 16 10 C -0.12 -2.39 5.64 -27.88 -0.16 -2.55 16 11 C 0.51 9.39 7.74 -10.99 -0.09 9.31 16 12 O -0.54 -11.91 15.67 5.56 0.09 -11.82 16 13 N -0.73 -9.99 3.39 -54.93 -0.19 -10.17 16 14 C 0.19 2.40 2.06 -69.08 -0.14 2.26 16 15 H 0.10 1.39 7.47 -51.93 -0.39 1.00 16 16 C -0.09 -1.23 4.83 -104.62 -0.51 -1.73 16 17 C -0.11 -1.37 9.67 -39.59 -0.38 -1.75 16 18 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 19 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 20 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 21 C -0.08 -1.11 8.58 -39.58 -0.34 -1.45 16 22 C 0.07 0.71 3.00 -25.96 -0.08 0.64 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 24 C -0.15 -1.27 6.52 -25.17 -0.16 -1.44 16 25 C -0.15 -1.05 7.09 -25.16 -0.18 -1.23 16 26 C 0.04 0.32 7.63 37.94 0.29 0.61 16 27 O -0.36 -3.64 9.65 -35.23 -0.34 -3.98 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 30 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 33 H 0.40 4.75 8.08 -40.82 -0.33 4.42 16 34 H 0.12 1.32 8.04 -52.49 -0.42 0.90 16 35 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.12 1.61 7.51 -52.49 -0.39 1.22 16 39 H 0.09 0.83 7.17 -51.93 -0.37 0.45 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -34.72 360.82 -9.26 -43.98 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.91 Total: 2.41 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -3.46 Total: -16.56 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.59 Total: -37.70 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.25 Total: -15.80 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.67 Total: 18.23 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.72 -9.26 -43.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291695688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.664 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds