Wall clock time and date at job start Tue Mar 31 2020 08:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00029 * 2 1 4 4 H 1.48491 * 109.47243 * 270.00173 * 3 2 1 5 5 H 1.48500 * 109.46985 * 30.00345 * 3 2 1 6 6 H 1.48493 * 109.47061 * 149.99896 * 3 2 1 7 7 C 1.37875 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99908 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00226 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47340 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47319 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99551 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00038 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99720 * 184.66971 * 13 11 10 15 15 H 1.09006 * 109.47320 * 327.64775 * 14 13 11 16 16 C 1.50697 * 109.47206 * 87.64583 * 14 13 11 17 17 C 1.38231 * 120.00042 * 39.72785 * 16 14 13 18 18 C 1.38235 * 119.99915 * 179.76701 * 17 16 14 19 19 C 1.38236 * 119.99981 * 0.48170 * 18 17 16 20 20 C 1.38229 * 120.00023 * 359.79278 * 19 18 17 21 21 C 1.38236 * 120.00224 * 359.95227 * 20 19 18 22 22 C 1.53001 * 109.46915 * 207.64935 * 14 13 11 23 23 H 1.09000 * 109.81951 * 299.72444 * 22 14 13 24 24 C 1.54375 * 109.83611 * 60.70614 * 22 14 13 25 25 C 1.55304 * 102.25548 * 140.87155 * 24 22 14 26 26 C 1.54949 * 100.94009 * 325.86794 * 25 24 22 27 27 O 1.43237 * 109.82931 * 178.84563 * 22 14 13 28 28 H 0.96992 * 120.00198 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47280 * 60.00007 * 9 7 2 30 30 H 1.09001 * 109.46752 * 299.99861 * 9 7 2 31 31 H 1.09005 * 109.46895 * 59.99763 * 10 9 7 32 32 H 1.08995 * 109.47200 * 300.00241 * 10 9 7 33 33 H 0.96997 * 120.00310 * 4.66610 * 13 11 10 34 34 H 1.07997 * 119.99980 * 359.97438 * 17 16 14 35 35 H 1.08000 * 119.99985 * 180.25217 * 18 17 16 36 36 H 1.08001 * 119.99841 * 179.77185 * 19 18 17 37 37 H 1.08002 * 119.99924 * 179.97438 * 20 19 18 38 38 H 1.07989 * 120.00268 * 180.02562 * 21 20 19 39 39 H 1.08999 * 110.84724 * 259.06779 * 24 22 14 40 40 H 1.09004 * 110.84453 * 22.47718 * 24 22 14 41 41 H 1.09002 * 111.12661 * 207.95429 * 25 24 22 42 42 H 1.08995 * 111.12357 * 83.78570 * 25 24 22 43 43 H 1.09000 * 110.31484 * 277.52927 * 26 25 24 44 44 H 1.09000 * 110.30841 * 155.35948 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5286 -2.6366 0.0009 12 8 6.1350 -1.5862 0.0015 13 7 6.2024 -3.8038 0.0014 14 6 7.6638 -3.8058 0.1046 15 1 8.0637 -2.9167 -0.3829 16 6 8.0647 -3.8055 1.5572 17 6 7.3600 -4.5690 2.4690 18 6 7.7309 -4.5724 3.8006 19 6 8.8002 -3.8045 4.2223 20 6 9.5013 -3.0366 3.3116 21 6 9.1338 -3.0372 1.9790 22 6 8.2215 -5.0563 -0.5782 23 1 7.8288 -5.9492 -0.0918 24 6 7.8305 -5.0562 -2.0716 25 6 9.1158 -5.6049 -2.7490 26 6 10.2105 -5.0097 -1.8281 27 8 9.6520 -5.0526 -0.5053 28 1 -0.4850 0.8400 0.0004 29 1 3.8746 -0.6801 0.8910 30 1 3.8752 -0.6805 -0.8889 31 1 3.6585 -3.1502 -0.8893 32 1 3.6579 -3.1506 0.8906 33 1 5.7199 -4.6425 -0.0667 34 1 6.5219 -5.1655 2.1403 35 1 7.1828 -5.1721 4.5123 36 1 9.0876 -3.8043 5.2634 37 1 10.3365 -2.4363 3.6411 38 1 9.6819 -2.4376 1.2674 39 1 6.9841 -5.7191 -2.2510 40 1 7.6088 -4.0455 -2.4145 41 1 9.2134 -5.2304 -3.7680 42 1 9.1356 -6.6945 -2.7293 43 1 10.4271 -3.9805 -2.1141 44 1 11.1157 -5.6151 -1.8763 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291695694.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:57 Heat of formation + Delta-G solvation = -68.693328 kcal Electronic energy + Delta-G solvation = -24790.326964 eV Core-core repulsion = 21285.966096 eV Total energy + Delta-G solvation = -3504.360867 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.53059 -39.04061 -38.63675 -35.12359 -33.47589 -32.37993 -31.74249 -30.95197 -30.74512 -29.57078 -26.56922 -25.10372 -22.73524 -22.43708 -21.70721 -21.48239 -20.40785 -19.70000 -17.38639 -17.18524 -16.96160 -16.39685 -15.85204 -15.56698 -15.43632 -14.73844 -14.71514 -14.19868 -14.06401 -13.79906 -13.54035 -13.34970 -13.22291 -12.73384 -12.64273 -12.55208 -12.15662 -12.04691 -11.77247 -11.56867 -11.41456 -11.15822 -11.01420 -10.97433 -10.91170 -10.17164 -10.04710 -9.87480 -9.78188 -9.31443 -9.18214 -8.97908 -8.83203 -8.62845 -8.50392 -6.02870 -4.01559 1.38525 1.47895 3.09808 3.11685 3.38093 3.44811 3.56336 3.78322 3.84604 4.18747 4.44466 4.51362 4.55936 4.80403 4.82296 4.92523 4.96257 5.05244 5.11488 5.18724 5.30504 5.32804 5.38983 5.45787 5.49513 5.52445 5.58677 5.61696 5.74941 5.89407 6.01021 6.06133 6.08995 6.09729 6.44508 6.50835 6.54803 6.65253 6.69122 6.81736 7.04842 7.36498 7.44161 7.72144 7.79657 8.49968 8.64185 9.00128 9.60366 11.09982 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.003905 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.284494 B = 7169.069910 C = 8317.999390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.070 3.930 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.121 4.121 11 C 0.515 3.485 12 O -0.534 6.534 13 N -0.733 5.733 14 C 0.173 3.827 15 H 0.099 0.901 16 C -0.082 4.082 17 C -0.106 4.106 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.093 4.093 22 C 0.083 3.917 23 H 0.085 0.915 24 C -0.151 4.151 25 C -0.156 4.156 26 C 0.047 3.953 27 O -0.365 6.365 28 H 0.263 0.737 29 H 0.023 0.977 30 H 0.018 0.982 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.398 0.602 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.193 -14.845 -0.293 25.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.161 4.161 11 C 0.303 3.697 12 O -0.409 6.409 13 N -0.387 5.387 14 C 0.067 3.933 15 H 0.117 0.883 16 C -0.083 4.083 17 C -0.124 4.124 18 C -0.141 4.141 19 C -0.142 4.142 20 C -0.141 4.141 21 C -0.111 4.111 22 C 0.024 3.976 23 H 0.102 0.898 24 C -0.188 4.188 25 C -0.193 4.193 26 C -0.029 4.029 27 O -0.284 6.284 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.037 0.963 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.232 0.768 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 21.594 -13.940 -0.102 25.703 hybrid contribution -0.028 0.500 -0.174 0.530 sum 21.566 -13.439 -0.276 25.413 Atomic orbital electron populations 1.69909 1.06288 1.26965 1.51102 1.24962 0.94694 0.99203 0.94321 0.86807 0.80668 0.83437 0.78728 1.20253 1.21430 1.18527 1.21109 0.89272 0.94548 1.51322 0.90943 1.19363 0.96398 0.90195 0.97649 1.21669 0.87774 1.03319 1.03326 1.21545 0.91495 0.82670 0.73950 1.90658 1.70702 1.31358 1.48197 1.46055 1.05666 1.09575 1.77428 1.20047 0.81642 0.99367 0.92223 0.88281 1.20051 0.95936 0.97034 0.95300 1.20882 0.99201 0.99111 0.93198 1.21079 0.97468 0.99763 0.95798 1.21099 0.96345 0.97413 0.99326 1.21083 1.00077 0.99525 0.93393 1.20927 0.96465 0.98010 0.95749 1.22870 0.82183 0.96867 0.95670 0.89752 1.23188 0.98618 1.03212 0.93795 1.23266 0.94545 1.01463 1.00075 1.23430 0.96746 1.00517 0.82225 1.88488 1.17797 1.95114 1.26961 0.92723 0.95833 0.96316 0.89650 0.89530 0.76785 0.86447 0.86276 0.86431 0.86324 0.86348 0.89600 0.89823 0.89796 0.90328 0.92091 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.73 27.47 -169.99 -4.67 18.06 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 7 C -0.52 -15.01 9.66 -34.44 -0.33 -15.34 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.05 16 10 C -0.12 -2.31 5.64 -27.88 -0.16 -2.46 16 11 C 0.51 9.17 7.81 -10.98 -0.09 9.08 16 12 O -0.53 -11.77 15.57 5.55 0.09 -11.68 16 13 N -0.73 -9.41 3.90 -54.93 -0.21 -9.62 16 14 C 0.17 2.18 1.89 -69.08 -0.13 2.05 16 15 H 0.10 1.47 7.30 -51.93 -0.38 1.09 16 16 C -0.08 -1.11 4.63 -104.62 -0.48 -1.59 16 17 C -0.11 -1.33 9.33 -39.59 -0.37 -1.70 16 18 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 19 C -0.12 -1.44 10.05 -39.59 -0.40 -1.83 16 20 C -0.12 -1.50 10.05 -39.59 -0.40 -1.89 16 21 C -0.09 -1.26 9.67 -39.58 -0.38 -1.64 16 22 C 0.08 0.82 3.14 -26.01 -0.08 0.74 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 24 C -0.15 -1.26 6.19 -24.79 -0.15 -1.41 16 25 C -0.16 -1.08 7.16 -24.48 -0.18 -1.25 16 26 C 0.05 0.39 7.78 38.19 0.30 0.68 16 27 O -0.37 -4.02 10.68 -35.23 -0.38 -4.39 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 29 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 30 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 31 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.40 3.85 8.63 -40.82 -0.35 3.49 16 34 H 0.12 1.27 7.71 -52.49 -0.40 0.87 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.12 1.51 8.04 -52.49 -0.42 1.09 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -35.06 363.98 -9.32 -44.38 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.96 Total: 1.56 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -3.44 Total: -16.51 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.56 Total: -36.91 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.29 Total: -16.07 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.67 Total: 18.06 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.06 -9.32 -44.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291695694.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.310 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds