Wall clock time and date at job start Tue Mar 31 2020 08:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48506 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46930 * 299.99307 * 3 2 1 6 6 H 1.48500 * 109.47254 * 59.99627 * 3 2 1 7 7 C 1.37882 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99358 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00402 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47304 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47013 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00003 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00001 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99991 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.54512 * 325.00695 * 14 13 11 16 16 C 1.53179 * 109.54447 * 85.18417 * 14 13 11 17 17 C 1.53091 * 109.16282 * 62.97238 * 16 14 13 18 18 O 1.42904 * 109.41727 * 57.61142 * 17 16 14 19 19 C 1.42905 * 114.09348 * 298.84487 * 18 17 16 20 20 H 1.09000 * 109.48167 * 301.15551 * 19 18 17 21 21 C 1.50705 * 109.47803 * 181.14062 * 19 18 17 22 22 C 1.38237 * 119.99982 * 324.72091 * 21 19 18 23 23 C 1.38230 * 120.00345 * 179.76740 * 22 21 19 24 24 C 1.38243 * 119.99737 * 0.48898 * 23 22 21 25 25 C 1.38236 * 119.99617 * 359.78638 * 24 23 22 26 26 C 1.38229 * 120.00177 * 145.00082 * 21 19 18 27 27 C 1.53092 * 109.41879 * 61.15622 * 19 18 17 28 28 H 0.96998 * 119.99982 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46809 * 59.99908 * 9 7 2 30 30 H 1.09001 * 109.46808 * 300.00420 * 9 7 2 31 31 H 1.08999 * 109.46825 * 59.99860 * 10 9 7 32 32 H 1.08994 * 109.46934 * 300.00096 * 10 9 7 33 33 H 0.97005 * 119.99478 * 0.02562 * 13 11 10 34 34 H 1.08998 * 109.52574 * 182.87943 * 16 14 13 35 35 H 1.09000 * 109.51942 * 303.01105 * 16 14 13 36 36 H 1.08998 * 109.48401 * 177.59828 * 17 16 14 37 37 H 1.09003 * 109.48338 * 297.63052 * 17 16 14 38 38 H 1.08007 * 119.99467 * 0.02562 * 22 21 19 39 39 H 1.07996 * 120.00608 * 180.25452 * 23 22 21 40 40 H 1.07991 * 119.99943 * 179.76884 * 24 23 22 41 41 H 1.08007 * 119.99429 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.00225 * 359.97438 * 26 21 19 43 43 H 1.08998 * 109.52177 * 182.48522 * 27 19 18 44 44 H 1.08999 * 109.52045 * 62.29472 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1656 -6.1344 0.0008 14 6 1.4331 -7.4031 0.0008 15 1 0.5222 -7.2982 0.5902 16 6 1.0714 -7.7861 -1.4376 17 6 2.3579 -8.0080 -2.2371 18 8 3.1418 -9.0214 -1.6043 19 6 3.5493 -8.6978 -0.2733 20 1 4.1342 -7.7781 -0.2858 21 6 4.3885 -9.8195 0.2821 22 6 4.1007 -11.1294 -0.0530 23 6 4.8735 -12.1580 0.4525 24 6 5.9279 -11.8775 1.3014 25 6 6.2121 -10.5680 1.6411 26 6 5.4425 -9.5390 1.1313 27 6 2.3106 -8.5036 0.6052 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.8719 -3.6043 0.8905 32 1 2.8719 -3.6044 -0.8894 33 1 3.1356 -6.1344 0.0004 34 1 0.4825 -8.7032 -1.4333 35 1 0.4921 -6.9832 -1.8935 36 1 2.1068 -8.3223 -3.2501 37 1 2.9271 -7.0791 -2.2752 38 1 3.2746 -11.3488 -0.7133 39 1 4.6512 -13.1810 0.1874 40 1 6.5293 -12.6813 1.6994 41 1 7.0357 -10.3489 2.3046 42 1 5.6649 -8.5160 1.3965 43 1 2.6184 -8.2135 1.6097 44 1 1.7467 -9.4353 0.6507 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291897993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:06 Heat of formation + Delta-G solvation = -96.531771 kcal Electronic energy + Delta-G solvation = -24261.681166 eV Core-core repulsion = 20756.113134 eV Total energy + Delta-G solvation = -3505.568033 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58696 -40.32105 -39.24863 -36.19415 -35.52920 -33.79169 -33.31122 -32.13478 -31.73133 -30.29438 -27.79938 -25.93464 -24.86294 -23.94891 -23.34704 -22.19270 -21.50308 -20.48307 -18.88501 -18.13705 -17.48282 -17.20238 -17.05386 -16.86284 -16.49975 -16.42558 -16.10570 -15.34137 -15.23751 -15.05065 -14.67932 -14.30381 -14.18438 -14.13675 -13.80185 -13.68771 -13.41203 -13.25277 -13.22402 -12.85214 -12.54894 -12.43961 -12.33288 -11.93777 -11.91278 -11.80636 -11.64256 -11.37614 -11.28236 -10.72249 -10.65287 -10.57880 -10.07651 -9.77492 -9.59652 -8.18456 -6.32252 0.42223 0.54981 1.42097 1.43303 1.56559 1.71209 2.20415 2.44116 2.66352 2.94905 3.14752 3.54315 3.72707 3.90143 3.93707 3.97542 4.04072 4.14170 4.21604 4.24135 4.34075 4.42144 4.50034 4.55319 4.60535 4.68822 4.73069 4.77623 4.83278 4.96515 5.01336 5.04630 5.10509 5.12470 5.21774 5.47151 5.53609 5.60133 5.63396 5.66420 5.67891 5.85562 6.13470 6.17602 6.22290 6.56575 6.86654 7.33454 7.38248 8.94379 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023734 B = 0.002660 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.442984 B =10524.534780 C =11223.576434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.973 3.027 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.120 4.120 11 C 0.515 3.485 12 O -0.585 6.585 13 N -0.715 5.715 14 C 0.141 3.859 15 H 0.071 0.929 16 C -0.163 4.163 17 C 0.067 3.933 18 O -0.381 6.381 19 C 0.133 3.867 20 H 0.074 0.926 21 C -0.094 4.094 22 C -0.108 4.108 23 C -0.131 4.131 24 C -0.125 4.125 25 C -0.128 4.128 26 C -0.120 4.120 27 C -0.137 4.137 28 H 0.262 0.738 29 H -0.018 1.018 30 H -0.018 1.018 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.411 0.589 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.109 0.891 37 H 0.052 0.948 38 H 0.124 0.876 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.136 0.864 43 H 0.090 0.910 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.262 -25.860 0.787 29.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.176 1.176 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.094 0.906 9 C 0.005 3.995 10 C -0.160 4.160 11 C 0.303 3.697 12 O -0.464 6.464 13 N -0.369 5.369 14 C 0.036 3.964 15 H 0.089 0.911 16 C -0.202 4.202 17 C -0.009 4.009 18 O -0.300 6.300 19 C 0.075 3.925 20 H 0.092 0.908 21 C -0.094 4.094 22 C -0.126 4.126 23 C -0.149 4.149 24 C -0.143 4.143 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.175 4.175 28 H 0.071 0.929 29 H 0.000 1.000 30 H 0.000 1.000 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.248 0.752 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.071 0.929 38 H 0.142 0.858 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.154 0.846 43 H 0.109 0.891 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.311 -25.945 0.703 29.169 hybrid contribution -0.172 1.320 0.035 1.332 sum 13.139 -24.625 0.737 27.921 Atomic orbital electron populations 1.70183 1.08299 1.27719 1.51596 1.26142 0.95727 1.03956 0.94711 0.85279 0.79329 0.78139 0.77531 1.17579 1.20667 1.20665 1.21747 0.93986 0.91611 1.50551 0.90616 1.18681 0.93697 0.92460 0.94678 1.21645 0.99342 0.90228 1.04803 1.21291 0.87830 0.86637 0.73901 1.90659 1.16584 1.88291 1.50854 1.46047 1.10575 1.04572 1.75756 1.20967 0.95815 0.82914 0.96672 0.91124 1.22517 0.99221 1.02472 0.95988 1.22564 0.90216 0.91471 0.96652 1.87935 1.70972 1.43763 1.27353 1.20855 0.93387 0.95798 0.82467 0.90842 1.19643 0.96786 0.94105 0.98914 1.21126 0.99988 0.92286 0.99181 1.21444 0.95837 0.99834 0.97819 1.21516 0.97611 0.97400 0.97763 1.21420 1.00085 0.92767 1.00282 1.21212 0.94551 1.00665 0.97345 1.22388 0.96508 0.98612 1.00016 0.92883 0.99957 0.99974 0.87788 0.87834 0.75189 0.89157 0.92362 0.87311 0.92930 0.85821 0.84456 0.84078 0.84004 0.84591 0.89150 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.56 13.29 21.45 0.28 -59.28 16 2 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 3 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 4 H -0.25 -10.54 7.11 99.48 0.71 -9.84 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.54 -30.67 9.11 25.60 0.23 -30.43 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.04 2.35 4.26 29.85 0.13 2.48 16 10 C -0.12 -4.74 5.64 29.85 0.17 -4.57 16 11 C 0.51 19.32 7.80 87.66 0.68 20.01 16 12 O -0.58 -28.10 15.65 -3.03 -0.05 -28.15 16 13 N -0.72 -18.48 4.41 -441.97 -1.95 -20.43 16 14 C 0.14 3.35 2.81 45.11 0.13 3.47 16 15 H 0.07 2.04 7.58 -2.39 -0.02 2.02 16 16 C -0.16 -3.69 5.80 30.68 0.18 -3.51 16 17 C 0.07 1.32 6.68 72.01 0.48 1.80 16 18 O -0.38 -7.62 9.56 -148.98 -1.42 -9.05 16 19 C 0.13 2.30 2.68 29.88 0.08 2.38 16 20 H 0.07 1.15 6.63 -2.39 -0.02 1.14 16 21 C -0.09 -1.63 5.00 -19.87 -0.10 -1.72 16 22 C -0.11 -1.84 9.35 22.27 0.21 -1.63 16 23 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 24 C -0.13 -1.60 10.05 22.27 0.22 -1.37 16 25 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 26 C -0.12 -1.80 9.68 22.27 0.22 -1.58 16 27 C -0.14 -2.43 5.06 30.68 0.16 -2.28 16 28 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 29 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 30 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 31 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 32 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 33 H 0.41 7.96 7.08 -92.70 -0.66 7.30 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 36 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.04 7.75 -2.39 -0.02 1.03 16 38 H 0.12 2.11 7.64 -2.91 -0.02 2.09 16 39 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 40 H 0.14 1.13 8.06 -2.92 -0.02 1.11 16 41 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 42 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 43 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -76.57 361.39 2.91 -73.66 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.33 Total: 17.05 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 3.69 Total: -20.07 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -1.66 Total: -79.71 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -1.47 Total: -37.19 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -76.57 2.91 -73.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291897993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.869 kcal (2) G-P(sol) polarization free energy of solvation -76.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds