Wall clock time and date at job start Tue Mar 31 2020 08:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47500 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99625 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00325 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99899 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.54074 * 34.82803 * 14 13 11 16 16 C 1.53179 * 109.54621 * 274.55468 * 14 13 11 17 17 C 1.53092 * 109.16348 * 297.11731 * 16 14 13 18 18 O 1.42900 * 109.41475 * 302.38750 * 17 16 14 19 19 C 1.42902 * 114.09840 * 61.16167 * 18 17 16 20 20 H 1.09001 * 109.48264 * 58.82224 * 19 18 17 21 21 C 1.50698 * 109.48442 * 178.85967 * 19 18 17 22 22 C 1.38234 * 119.99676 * 39.66443 * 21 19 18 23 23 C 1.38243 * 119.99386 * 179.79289 * 22 21 19 24 24 C 1.38229 * 120.00130 * 0.45974 * 23 22 21 25 25 C 1.38240 * 120.00343 * 359.77438 * 24 23 22 26 26 C 1.38233 * 119.99400 * 0.02562 * 25 24 23 27 27 C 1.53098 * 109.41396 * 298.84297 * 19 18 17 28 28 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 29 29 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 30 30 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 31 31 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 32 32 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 33 33 H 0.97005 * 119.99841 * 359.97438 * 13 11 10 34 34 H 1.09003 * 109.51875 * 57.02449 * 16 14 13 35 35 H 1.08998 * 109.51979 * 177.20934 * 16 14 13 36 36 H 1.09003 * 109.47440 * 182.40541 * 17 16 14 37 37 H 1.08998 * 109.48933 * 62.38012 * 17 16 14 38 38 H 1.07993 * 120.00497 * 0.02562 * 22 21 19 39 39 H 1.08001 * 119.99688 * 180.25647 * 23 22 21 40 40 H 1.08000 * 120.00034 * 179.78874 * 24 23 22 41 41 H 1.07996 * 120.00190 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.99593 * 179.97438 * 26 25 24 43 43 H 1.09005 * 109.51666 * 297.70028 * 27 19 18 44 44 H 1.09004 * 109.57465 * 177.54458 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 6 1.4918 -4.9672 0.0217 12 8 0.2789 -4.9671 0.0208 13 7 2.1656 -6.1344 0.0272 14 6 1.4331 -7.4030 0.0328 15 1 0.5208 -7.2998 -0.5547 16 6 1.0771 -7.7830 1.4733 17 6 2.3667 -8.0011 2.2689 18 8 3.1497 -9.0150 1.6357 19 6 3.5522 -8.6940 0.3026 20 1 4.1355 -7.7733 0.3107 21 6 4.3910 -9.8159 -0.2531 22 6 4.0518 -11.1294 0.0125 23 6 4.8189 -12.1586 -0.5008 24 6 5.9304 -11.8740 -1.2717 25 6 6.2723 -10.5604 -1.5333 26 6 5.5029 -9.5314 -1.0234 27 6 2.3101 -8.5037 -0.5720 28 1 -0.4850 0.8401 -0.0041 29 1 0.6241 -2.5528 0.9015 30 1 0.6247 -2.5609 -0.8785 31 1 2.8719 -3.6083 -0.8736 32 1 2.8719 -3.6004 0.9064 33 1 3.1357 -6.1344 0.0276 34 1 0.4990 -6.9794 1.9297 35 1 0.4894 -8.7010 1.4732 36 1 2.1194 -8.3133 3.2835 37 1 2.9346 -7.0714 2.3029 38 1 3.1856 -11.3517 0.6179 39 1 4.5516 -13.1849 -0.2968 40 1 6.5316 -12.6780 -1.6699 41 1 7.1410 -10.3381 -2.1353 42 1 5.7703 -8.5050 -1.2274 43 1 1.7474 -9.4364 -0.6133 44 1 2.6130 -8.2161 -1.5788 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291897995.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:10 Heat of formation + Delta-G solvation = -75.537790 kcal Electronic energy + Delta-G solvation = -24259.926323 eV Core-core repulsion = 20755.268657 eV Total energy + Delta-G solvation = -3504.657665 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.61456 -39.27806 -38.27306 -35.01042 -33.46082 -33.07251 -31.70687 -31.15875 -30.54515 -29.54125 -25.95659 -24.91538 -24.02177 -22.85534 -22.06825 -21.47852 -20.01077 -19.35657 -17.50052 -16.90250 -16.44215 -16.17502 -15.95804 -15.59998 -15.37961 -15.10837 -14.62509 -14.45004 -14.34434 -13.88576 -13.61818 -13.34212 -13.10930 -12.94267 -12.67499 -12.38070 -12.17577 -12.12235 -11.78990 -11.53885 -11.29547 -11.17232 -10.99914 -10.93252 -10.62352 -10.54844 -9.97458 -9.78681 -9.68020 -9.19677 -9.17661 -9.02971 -8.97548 -8.82489 -8.33099 -5.97214 -4.01649 1.03119 1.14903 3.21558 3.32436 3.36510 3.38298 3.40674 3.48473 3.64662 4.35652 4.46548 4.59879 4.59978 4.72380 4.78094 4.83175 4.88636 4.89845 5.00037 5.22449 5.30078 5.31599 5.37746 5.39327 5.53549 5.64087 5.68533 5.74261 5.81060 5.83698 5.95817 6.01769 6.18685 6.20282 6.22122 6.25048 6.31674 6.70841 6.71582 6.87175 7.01080 7.72989 7.83336 7.84737 8.05843 8.37441 8.75081 9.06919 9.61941 11.13696 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023664 B = 0.002662 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.927945 B =10516.084882 C =11220.613866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.131 4.131 11 C 0.511 3.489 12 O -0.532 6.532 13 N -0.742 5.742 14 C 0.143 3.857 15 H 0.093 0.907 16 C -0.167 4.167 17 C 0.063 3.937 18 O -0.375 6.375 19 C 0.132 3.868 20 H 0.066 0.934 21 C -0.080 4.080 22 C -0.092 4.092 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.109 4.109 27 C -0.150 4.150 28 H 0.261 0.739 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.393 0.607 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.086 0.914 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.100 -24.988 -0.393 27.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.171 4.171 11 C 0.300 3.700 12 O -0.407 6.407 13 N -0.396 5.396 14 C 0.038 3.962 15 H 0.111 0.889 16 C -0.206 4.206 17 C -0.013 4.013 18 O -0.294 6.294 19 C 0.074 3.926 20 H 0.084 0.916 21 C -0.080 4.080 22 C -0.110 4.110 23 C -0.142 4.142 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.127 4.127 27 C -0.188 4.188 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.228 0.772 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.104 0.896 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.079 -25.019 -0.300 26.975 hybrid contribution 0.828 1.157 -0.130 1.429 sum 10.907 -23.863 -0.430 26.241 Atomic orbital electron populations 1.69999 1.06054 1.26590 1.50175 1.25032 0.94831 0.99238 0.95304 0.86592 0.79770 0.83510 0.78076 1.20668 1.21210 1.19893 1.21220 0.92911 0.91026 1.51406 0.92634 1.18889 0.93149 0.89363 0.98592 1.21876 1.00745 0.92025 1.02428 1.21575 0.88692 0.85628 0.74144 1.90670 1.14415 1.87582 1.48053 1.46373 1.09779 1.05474 1.78019 1.20866 0.96143 0.83076 0.96110 0.88919 1.22573 0.98550 1.02864 0.96597 1.22577 0.91079 0.91428 0.96240 1.87933 1.71194 1.43738 1.26515 1.20806 0.93563 0.95154 0.83069 0.91625 1.19589 0.95730 0.94156 0.98523 1.21018 0.99766 0.91853 0.98384 1.21185 0.95641 0.99208 0.98211 1.21186 0.97263 0.96666 0.98713 1.21108 0.99820 0.92762 1.00266 1.21004 0.94249 0.99651 0.97829 1.22480 0.96814 0.99659 0.99876 0.92944 0.95843 0.95853 0.90288 0.90311 0.77227 0.89849 0.90413 0.88658 0.92735 0.85537 0.86059 0.86174 0.85908 0.85824 0.89563 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.40 13.29 55.43 0.74 -26.67 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 10 C -0.13 -2.61 5.64 -27.88 -0.16 -2.76 16 11 C 0.51 9.50 7.80 -10.99 -0.09 9.42 16 12 O -0.53 -12.20 15.64 5.55 0.09 -12.11 16 13 N -0.74 -9.95 4.40 -53.63 -0.24 -10.18 16 14 C 0.14 1.73 2.82 -67.75 -0.19 1.54 16 15 H 0.09 1.30 7.57 -51.93 -0.39 0.91 16 16 C -0.17 -1.91 5.81 -26.59 -0.15 -2.06 16 17 C 0.06 0.66 6.68 37.20 0.25 0.91 16 18 O -0.37 -4.08 9.72 -35.23 -0.34 -4.42 16 19 C 0.13 1.27 2.67 -27.83 -0.07 1.20 16 20 H 0.07 0.60 6.58 -51.93 -0.34 0.26 16 21 C -0.08 -0.76 4.97 -104.63 -0.52 -1.28 16 22 C -0.09 -0.85 9.36 -39.58 -0.37 -1.22 16 23 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 24 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 25 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 26 C -0.11 -0.95 9.67 -39.58 -0.38 -1.33 16 27 C -0.15 -1.45 5.05 -26.59 -0.13 -1.58 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.39 4.28 7.07 -40.82 -0.29 3.99 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.59 7.75 -51.93 -0.40 0.18 16 38 H 0.13 1.13 7.77 -52.49 -0.41 0.72 16 39 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.12 0.89 8.04 -52.49 -0.42 0.47 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -33.95 361.54 -9.74 -43.69 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.87 Total: 1.63 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -3.54 Total: -14.00 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.50 Total: -36.85 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.26 Total: -16.53 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.95 -9.74 -43.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291897995.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.848 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds