Wall clock time and date at job start Tue Mar 31 2020 08:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48506 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46930 * 299.99307 * 3 2 1 6 6 H 1.48500 * 109.47254 * 59.99627 * 3 2 1 7 7 C 1.37882 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99358 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00402 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47304 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47013 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00003 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00001 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99991 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.54512 * 325.00695 * 14 13 11 16 16 C 1.53179 * 109.54447 * 85.18417 * 14 13 11 17 17 C 1.53090 * 109.16577 * 176.93569 * 16 14 13 18 18 O 1.42902 * 109.41244 * 302.39131 * 17 16 14 19 19 C 1.42899 * 114.09845 * 61.15908 * 18 17 16 20 20 H 1.08998 * 109.48536 * 58.82688 * 19 18 17 21 21 C 1.50700 * 109.48110 * 178.84666 * 19 18 17 22 22 C 1.38237 * 120.00132 * 39.72260 * 21 19 18 23 23 C 1.38238 * 120.00184 * 179.74352 * 22 21 19 24 24 C 1.38230 * 119.99957 * 0.55655 * 23 22 21 25 25 C 1.38243 * 119.99838 * 359.69944 * 24 23 22 26 26 C 1.38233 * 120.00038 * 0.02562 * 25 24 23 27 27 C 1.53090 * 109.41602 * 298.83901 * 19 18 17 28 28 H 0.96998 * 119.99982 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46809 * 59.99908 * 9 7 2 30 30 H 1.09001 * 109.46808 * 300.00420 * 9 7 2 31 31 H 1.08999 * 109.46825 * 59.99860 * 10 9 7 32 32 H 1.08994 * 109.46934 * 300.00096 * 10 9 7 33 33 H 0.97005 * 119.99478 * 0.02562 * 13 11 10 34 34 H 1.09000 * 109.51851 * 296.84126 * 16 14 13 35 35 H 1.09004 * 109.51801 * 56.96458 * 16 14 13 36 36 H 1.08993 * 109.48129 * 62.37141 * 17 16 14 37 37 H 1.08994 * 109.48055 * 182.39759 * 17 16 14 38 38 H 1.08004 * 119.99870 * 0.02562 * 22 21 19 39 39 H 1.07999 * 120.00239 * 180.27695 * 23 22 21 40 40 H 1.07994 * 120.00465 * 179.72267 * 24 23 22 41 41 H 1.07999 * 119.99672 * 180.02562 * 25 24 23 42 42 H 1.07999 * 120.00132 * 179.97438 * 26 25 24 43 43 H 1.09003 * 109.52546 * 297.70233 * 27 19 18 44 44 H 1.09000 * 109.52544 * 177.52013 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1656 -6.1344 0.0008 14 6 1.4331 -7.4031 0.0008 15 1 0.5222 -7.2982 0.5902 16 6 1.0714 -7.7861 -1.4376 17 6 0.3743 -9.1490 -1.4346 18 8 1.2321 -10.1199 -0.8316 19 6 1.5656 -9.8388 0.5292 20 1 0.6532 -9.7803 1.1225 21 6 2.4458 -10.9370 1.0681 22 6 3.4320 -11.4865 0.2703 23 6 4.2429 -12.4902 0.7664 24 6 4.0601 -12.9523 2.0563 25 6 3.0704 -12.4064 2.8523 26 6 2.2632 -11.3988 2.3581 27 6 2.3106 -8.5036 0.6052 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.8719 -3.6043 0.8905 32 1 2.8719 -3.6044 -0.8894 33 1 3.1356 -6.1344 0.0004 34 1 0.4017 -7.0353 -1.8569 35 1 1.9789 -7.8413 -2.0389 36 1 -0.5537 -9.0814 -0.8670 37 1 0.1527 -9.4462 -2.4596 38 1 3.5720 -11.1286 -0.7390 39 1 5.0163 -12.9164 0.1447 40 1 4.6906 -13.7395 2.4424 41 1 2.9278 -12.7672 3.8602 42 1 1.4898 -10.9727 2.9798 43 1 3.2432 -8.5744 0.0454 44 1 2.5272 -8.2660 1.6467 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291897997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:14 Heat of formation + Delta-G solvation = -78.013351 kcal Electronic energy + Delta-G solvation = -23887.481469 eV Core-core repulsion = 20382.716455 eV Total energy + Delta-G solvation = -3504.765014 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.45379 -39.27833 -38.37214 -35.12511 -33.45332 -33.08912 -31.74388 -31.17179 -30.59522 -29.53696 -26.03768 -24.63244 -23.96265 -22.87007 -21.97674 -21.11632 -20.48434 -19.54801 -17.48319 -16.91657 -16.47413 -16.30782 -15.72778 -15.56232 -15.31454 -14.99380 -14.63560 -14.44200 -14.43230 -13.91756 -13.79877 -13.62931 -13.12564 -12.99538 -12.74333 -12.27502 -12.17655 -11.83692 -11.65685 -11.47584 -11.25914 -11.16441 -11.02701 -10.94280 -10.64032 -10.55501 -9.98570 -9.96924 -9.67156 -9.20759 -9.18621 -9.08327 -8.91165 -8.81157 -8.32984 -5.96939 -4.01219 1.01280 1.13438 3.22417 3.31835 3.31988 3.38874 3.41969 3.47830 3.64653 4.36175 4.46833 4.57805 4.63638 4.70261 4.76411 4.82370 4.89484 4.96156 5.01472 5.20459 5.23710 5.30673 5.36140 5.38096 5.49197 5.63652 5.63864 5.67685 5.76735 5.81079 5.96433 6.12486 6.16993 6.22251 6.23697 6.23945 6.30679 6.69671 6.72571 6.88727 6.98188 7.73906 7.85393 7.87473 8.06341 8.38085 8.76603 9.07599 9.62385 11.14052 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.028386 B = 0.002353 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.163540 B =11895.529656 C =12359.013287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.511 3.489 12 O -0.534 6.534 13 N -0.739 5.739 14 C 0.145 3.855 15 H 0.087 0.913 16 C -0.168 4.168 17 C 0.065 3.935 18 O -0.375 6.375 19 C 0.136 3.864 20 H 0.070 0.930 21 C -0.080 4.080 22 C -0.091 4.091 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.109 4.109 27 C -0.150 4.150 28 H 0.260 0.740 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.397 0.603 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.078 0.922 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.642 -27.101 1.889 28.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.299 3.701 12 O -0.410 6.410 13 N -0.392 5.392 14 C 0.039 3.961 15 H 0.105 0.895 16 C -0.207 4.207 17 C -0.012 4.012 18 O -0.294 6.294 19 C 0.078 3.922 20 H 0.088 0.912 21 C -0.080 4.080 22 C -0.109 4.109 23 C -0.142 4.142 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.127 4.127 27 C -0.188 4.188 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.231 0.769 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.097 0.903 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.652 -27.109 1.799 27.971 hybrid contribution 0.846 1.193 0.102 1.466 sum 7.498 -25.916 1.900 27.046 Atomic orbital electron populations 1.70009 1.06053 1.26471 1.50311 1.25036 0.94837 0.99262 0.95326 0.86532 0.80000 0.83821 0.77587 1.19755 1.21013 1.21014 1.21264 0.92962 0.91011 1.51223 0.92566 1.18898 0.93173 0.89402 0.98589 1.21870 1.00728 0.91956 1.02481 1.21588 0.88685 0.85658 0.74120 1.90661 1.14454 1.87613 1.48225 1.46259 1.09941 1.05201 1.77848 1.20831 0.95996 0.83290 0.95962 0.89521 1.22637 1.02285 0.97889 0.97864 1.22579 0.92239 0.87602 0.98742 1.87931 1.68461 1.47985 1.25068 1.20770 0.95981 0.91455 0.83974 0.91244 1.19571 0.96824 0.97265 0.94319 1.21029 0.94237 0.95893 0.99787 1.21190 0.99633 0.97484 0.95904 1.21190 0.98190 0.99930 0.94465 1.21103 0.96037 0.96946 0.99915 1.20995 0.99735 0.96949 0.95035 1.22483 0.99807 0.93896 1.02643 0.93007 0.95853 0.95845 0.90267 0.90250 0.76916 0.89876 0.90867 0.92742 0.88368 0.85507 0.86016 0.86150 0.85930 0.85881 0.90314 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.48 13.29 55.43 0.74 -26.75 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.04 0.99 4.26 -27.89 -0.12 0.88 16 10 C -0.13 -2.63 5.64 -27.88 -0.16 -2.79 16 11 C 0.51 9.67 7.80 -10.98 -0.09 9.59 16 12 O -0.53 -12.37 15.65 5.56 0.09 -12.28 16 13 N -0.74 -10.18 5.09 -53.63 -0.27 -10.45 16 14 C 0.14 1.78 2.54 -67.75 -0.17 1.61 16 15 H 0.09 1.24 7.58 -51.93 -0.39 0.84 16 16 C -0.17 -1.95 5.72 -26.59 -0.15 -2.10 16 17 C 0.07 0.66 6.84 37.20 0.25 0.91 16 18 O -0.38 -4.04 9.72 -35.23 -0.34 -4.38 16 19 C 0.14 1.33 2.85 -27.84 -0.08 1.25 16 20 H 0.07 0.65 8.00 -51.93 -0.42 0.24 16 21 C -0.08 -0.76 4.98 -104.62 -0.52 -1.28 16 22 C -0.09 -0.84 9.36 -39.58 -0.37 -1.21 16 23 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 24 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 25 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 26 C -0.11 -0.93 9.67 -39.58 -0.38 -1.31 16 27 C -0.15 -1.46 4.88 -26.59 -0.13 -1.59 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 29 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.40 4.35 8.61 -40.82 -0.35 4.00 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.13 1.13 7.77 -52.48 -0.41 0.73 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.12 0.87 8.04 -52.49 -0.42 0.45 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -34.26 365.39 -9.85 -44.11 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.02 Total: 1.35 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -3.52 Total: -13.78 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.46 Total: -37.20 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.26 Total: -16.67 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.26 -9.85 -44.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291897997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.904 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds