Wall clock time and date at job start Tue Mar 31 2020 08:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86796 * 120.00080 * 2 1 4 4 H 1.48498 * 109.47017 * 239.99661 * 3 2 1 5 5 H 1.48502 * 109.47181 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47002 * 119.99619 * 3 2 1 7 7 C 1.37878 * 119.99486 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99174 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46944 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47324 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99763 * 5.21430 * 11 10 9 13 13 N 1.34774 * 119.99918 * 185.21794 * 11 10 9 14 14 C 1.46503 * 119.99384 * 184.99714 * 13 11 10 15 15 C 1.53007 * 109.46949 * 174.46718 * 14 13 11 16 16 C 1.52993 * 115.55104 * 182.42352 * 15 14 13 17 17 H 1.09002 * 109.47250 * 151.23158 * 16 15 14 18 18 O 1.42901 * 109.47058 * 271.22722 * 16 15 14 19 19 C 1.50692 * 109.47306 * 31.22736 * 16 15 14 20 20 C 1.38230 * 120.00384 * 272.67944 * 19 16 15 21 21 C 1.38238 * 120.00448 * 179.76906 * 20 19 16 22 22 C 1.38239 * 119.99717 * 0.50184 * 21 20 19 23 23 C 1.38235 * 119.99983 * 359.75132 * 22 21 20 24 24 C 1.38237 * 119.99865 * 359.97438 * 23 22 21 25 25 C 1.53003 * 117.51287 * 328.12380 * 15 14 13 26 26 C 1.52999 * 117.49654 * 36.75082 * 15 14 13 27 27 H 0.97003 * 119.99472 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47234 * 60.00052 * 9 7 2 29 29 H 1.08998 * 109.47293 * 299.99126 * 9 7 2 30 30 H 1.08998 * 109.47239 * 59.99212 * 10 9 7 31 31 H 1.09004 * 109.47054 * 299.99936 * 10 9 7 32 32 H 0.96991 * 120.00439 * 4.99066 * 13 11 10 33 33 H 1.08999 * 109.47780 * 54.46895 * 14 13 11 34 34 H 1.09004 * 109.47285 * 294.46014 * 14 13 11 35 35 H 0.96706 * 113.99539 * 60.00153 * 18 16 15 36 36 H 1.08010 * 120.00107 * 359.97438 * 20 19 16 37 37 H 1.08004 * 120.00277 * 180.23184 * 21 20 19 38 38 H 1.07994 * 119.99974 * 179.72893 * 22 21 20 39 39 H 1.07993 * 120.00206 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.99926 * 179.97438 * 24 23 22 41 41 H 1.09006 * 117.49301 * 214.97092 * 25 15 14 42 42 H 1.08992 * 117.50496 * 359.97438 * 25 15 14 43 43 H 1.08999 * 117.50159 * 359.97235 * 26 15 14 44 44 H 1.08994 * 117.50063 * 145.00266 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 -0.0001 12 8 0.2827 -4.9693 -0.0960 13 7 2.1614 -6.1320 0.1059 14 6 1.4417 -7.4033 -0.0045 15 6 2.4435 -8.5596 0.0125 16 6 1.8419 -9.9564 -0.1540 17 1 2.5728 -10.6129 -0.6262 18 8 1.4903 -10.4796 1.1284 19 6 0.6098 -9.8730 -1.0176 20 6 -0.6194 -9.6066 -0.4442 21 6 -1.7490 -9.5253 -1.2369 22 6 -1.6509 -9.7208 -2.6019 23 6 -0.4225 -9.9925 -3.1747 24 6 0.7079 -10.0681 -2.3826 25 6 3.8241 -8.3077 -0.5969 26 6 3.6669 -8.4210 0.9208 27 1 -0.4849 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5568 0.8903 30 1 2.8720 -3.6044 0.8904 31 1 2.8719 -3.6044 -0.8895 32 1 3.1198 -6.1286 0.2553 33 1 0.8800 -7.4230 -0.9385 34 1 0.7543 -7.5058 0.8352 35 1 0.8420 -9.9449 1.6070 36 1 -0.6969 -9.4585 0.6229 37 1 -2.7088 -9.3134 -0.7894 38 1 -2.5340 -9.6617 -3.2207 39 1 -0.3459 -10.1456 -4.2410 40 1 1.6676 -10.2807 -2.8301 41 1 4.3038 -9.1373 -1.1165 42 1 4.0189 -7.3183 -1.0105 43 1 3.7584 -7.5059 1.5058 44 1 4.0433 -9.3249 1.3996 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292020747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:56 Heat of formation + Delta-G solvation = -45.968906 kcal Electronic energy + Delta-G solvation = -24376.224219 eV Core-core repulsion = 20872.848757 eV Total energy + Delta-G solvation = -3503.375462 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.58889 -39.15096 -38.10150 -36.17002 -33.50282 -33.36613 -31.79380 -31.09773 -30.94299 -27.77783 -26.49333 -25.07660 -22.82049 -22.61103 -22.00016 -21.47035 -19.85492 -19.51914 -17.88380 -17.16972 -16.28380 -16.18972 -15.83199 -15.48773 -15.28562 -15.10948 -14.59887 -14.42612 -14.17669 -13.90119 -13.55037 -13.49688 -13.05469 -12.98375 -12.72052 -12.18251 -12.07786 -11.98828 -11.73606 -11.42932 -11.22305 -11.15888 -10.91148 -10.86707 -10.61390 -10.25485 -10.22277 -9.95179 -9.66328 -9.19008 -9.09350 -9.01615 -8.92483 -8.72767 -8.31351 -5.95680 -4.00197 1.12330 1.22744 3.25049 3.32618 3.34511 3.38915 3.40465 3.51031 3.59160 4.13154 4.18286 4.42136 4.47843 4.59067 4.62027 4.70104 4.81117 4.83313 4.95685 5.16354 5.30213 5.39079 5.39142 5.45000 5.48685 5.65444 5.68103 5.70590 5.76145 5.83670 5.86157 5.93185 6.21207 6.24919 6.26495 6.32825 6.35209 6.72167 6.79234 6.89134 7.25909 7.74151 7.86019 7.87383 8.07567 8.39004 8.78173 9.08176 9.63212 11.15236 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018530 B = 0.003020 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.726573 B = 9267.946803 C =10161.437114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.533 6.533 13 N -0.746 5.746 14 C 0.159 3.841 15 C -0.174 4.174 16 C 0.192 3.808 17 H 0.110 0.890 18 O -0.551 6.551 19 C -0.114 4.114 20 C -0.108 4.108 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.109 4.109 25 C -0.167 4.167 26 C -0.160 4.160 27 H 0.261 0.739 28 H 0.024 0.976 29 H 0.022 0.978 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.395 0.605 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.377 0.623 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.540 -24.410 -2.189 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.408 6.408 13 N -0.402 5.402 14 C 0.035 3.965 15 C -0.175 4.175 16 C 0.133 3.867 17 H 0.128 0.872 18 O -0.357 6.357 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.136 4.136 24 C -0.127 4.127 25 C -0.204 4.204 26 C -0.197 4.197 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.231 0.769 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.225 0.775 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.898 -24.737 -2.444 25.162 hybrid contribution 0.472 1.428 0.107 1.508 sum 4.369 -23.309 -2.338 23.830 Atomic orbital electron populations 1.69995 1.06055 1.26686 1.50100 1.25027 0.94828 0.99212 0.95291 0.86648 0.79545 0.83167 0.78541 1.20252 1.21274 1.20248 1.21187 0.92882 0.91038 1.51529 0.92675 1.18889 0.93159 0.89347 0.98598 1.21869 1.00722 0.92020 1.02397 1.21556 0.88578 0.85592 0.74519 1.90671 1.14590 1.87578 1.47928 1.46329 1.11706 1.05578 1.76624 1.20659 0.92805 0.80932 1.02059 1.22457 0.90612 0.96456 1.07962 1.20188 0.92580 0.91090 0.82866 0.87215 1.86594 1.65130 1.53625 1.30319 1.20397 0.95396 1.00763 0.94894 1.20867 0.92270 0.99600 0.99852 1.21149 0.98638 0.99261 0.93996 1.21201 0.97815 0.99472 0.95172 1.21136 0.92732 0.99957 0.99806 1.20908 0.98678 1.00244 0.92878 1.23123 0.97239 1.03742 0.96260 1.23028 0.99618 1.03939 0.93065 0.92897 0.95710 0.95969 0.90501 0.90147 0.76905 0.90798 0.91990 0.77478 0.86232 0.85819 0.86023 0.85997 0.86071 0.88288 0.88000 0.88213 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.57 13.29 55.43 0.74 -26.84 16 2 C 0.06 1.70 5.46 -17.81 -0.10 1.60 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.04 1.02 4.28 -27.88 -0.12 0.90 16 10 C -0.13 -2.67 5.64 -27.88 -0.16 -2.82 16 11 C 0.51 9.92 7.82 -10.99 -0.09 9.84 16 12 O -0.53 -12.74 15.99 5.55 0.09 -12.65 16 13 N -0.75 -10.58 4.98 -60.29 -0.30 -10.88 16 14 C 0.16 2.02 4.45 -4.04 -0.02 2.01 16 15 C -0.17 -1.61 2.17 -154.51 -0.33 -1.95 16 16 C 0.19 1.70 3.37 -27.89 -0.09 1.61 16 17 H 0.11 0.88 7.81 -51.93 -0.41 0.47 16 18 O -0.55 -5.07 12.96 -35.23 -0.46 -5.53 16 19 C -0.11 -1.12 3.74 -104.63 -0.39 -1.52 16 20 C -0.11 -1.10 8.07 -39.58 -0.32 -1.42 16 21 C -0.11 -1.16 10.05 -39.58 -0.40 -1.56 16 22 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 23 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 24 C -0.11 -1.04 9.69 -39.58 -0.38 -1.42 16 25 C -0.17 -1.35 9.39 -26.73 -0.25 -1.60 16 26 C -0.16 -1.32 9.33 -26.73 -0.25 -1.57 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 28 H 0.02 0.74 8.04 -51.93 -0.42 0.32 16 29 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.40 4.53 5.61 -40.82 -0.23 4.30 16 33 H 0.07 1.10 6.97 -51.93 -0.36 0.73 16 34 H 0.06 0.82 8.02 -51.93 -0.42 0.41 16 35 H 0.38 2.70 7.36 45.56 0.34 3.03 16 36 H 0.12 1.03 6.55 -52.48 -0.34 0.68 16 37 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.10 0.66 8.04 -51.93 -0.42 0.24 16 42 H 0.10 0.88 6.96 -51.93 -0.36 0.51 16 43 H 0.10 0.85 7.06 -51.93 -0.37 0.48 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -35.12 363.98 -9.38 -44.50 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.91 Total: 5.57 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -4.01 Total: -16.39 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.44 Total: -37.72 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.37 Total: -18.17 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.12 -9.38 -44.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292020747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.466 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds