Wall clock time and date at job start Tue Mar 31 2020 08:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00005 * 2 1 4 4 H 1.48497 * 109.47210 * 239.99859 * 3 2 1 5 5 H 1.48499 * 109.47089 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47025 * 119.99901 * 3 2 1 7 7 C 1.37878 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99866 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99624 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46903 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46903 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00202 * 354.80013 * 11 10 9 13 13 N 1.34782 * 120.00091 * 174.80010 * 11 10 9 14 14 C 1.46495 * 120.00230 * 184.69869 * 13 11 10 15 15 C 1.52999 * 109.47483 * 184.95461 * 14 13 11 16 16 C 1.53001 * 115.54715 * 270.84660 * 15 14 13 17 17 H 1.09001 * 109.46753 * 174.49112 * 16 15 14 18 18 O 1.42898 * 109.47545 * 54.49353 * 16 15 14 19 19 C 1.50701 * 109.47171 * 294.48870 * 16 15 14 20 20 C 1.38238 * 119.99643 * 87.90148 * 19 16 15 21 21 C 1.38233 * 119.99539 * 179.76999 * 20 19 16 22 22 C 1.38229 * 120.00358 * 0.50440 * 21 20 19 23 23 C 1.38235 * 119.99630 * 359.74639 * 22 21 20 24 24 C 1.38230 * 120.00443 * 359.97438 * 23 22 21 25 25 C 1.52995 * 117.50395 * 125.13545 * 15 14 13 26 26 C 1.52998 * 117.49778 * 56.51007 * 15 14 13 27 27 H 0.97004 * 120.00110 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47407 * 60.00317 * 9 7 2 29 29 H 1.09005 * 109.46936 * 300.00206 * 9 7 2 30 30 H 1.08998 * 109.47460 * 60.00152 * 10 9 7 31 31 H 1.09005 * 109.47027 * 299.99580 * 10 9 7 32 32 H 0.96994 * 119.99907 * 4.70211 * 13 11 10 33 33 H 1.09008 * 109.47395 * 304.95218 * 14 13 11 34 34 H 1.08996 * 109.47361 * 64.95018 * 14 13 11 35 35 H 0.96700 * 113.99825 * 299.99977 * 18 16 15 36 36 H 1.08005 * 120.00097 * 359.97438 * 20 19 16 37 37 H 1.08007 * 119.99579 * 180.23151 * 21 20 19 38 38 H 1.08001 * 119.99988 * 179.72936 * 22 21 20 39 39 H 1.08010 * 119.99562 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.00386 * 179.97438 * 24 23 22 41 41 H 1.09004 * 117.49814 * 359.97438 * 25 15 14 42 42 H 1.09000 * 117.50620 * 145.02597 * 25 15 14 43 43 H 1.08997 * 117.50231 * 214.98080 * 26 15 14 44 44 H 1.09001 * 117.50324 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 8 0.2827 -4.9693 0.0936 13 7 2.1616 -6.1319 -0.1071 14 6 1.4247 -7.3937 -0.2114 15 6 2.4110 -8.5633 -0.1949 16 6 2.9452 -8.9953 -1.5620 17 1 3.7072 -9.7631 -1.4282 18 8 3.5170 -7.8677 -2.2281 19 6 1.8148 -9.5485 -2.3910 20 6 1.0494 -8.7005 -3.1696 21 6 0.0156 -9.2086 -3.9337 22 6 -0.2595 -10.5631 -3.9113 23 6 0.5026 -11.4102 -3.1287 24 6 1.5401 -10.9030 -2.3690 25 6 2.1968 -9.6534 0.8570 26 6 3.3602 -8.6701 1.0003 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5567 -0.8902 29 1 0.6247 -2.5570 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8906 32 1 3.1315 -6.1347 -0.1142 33 1 0.7391 -7.4849 0.6311 34 1 0.8593 -7.4084 -1.1431 35 1 2.8943 -7.1438 -2.3808 36 1 1.2613 -7.6415 -3.1834 37 1 -0.5800 -8.5466 -4.5449 38 1 -1.0700 -10.9594 -4.5050 39 1 0.2874 -12.4685 -3.1109 40 1 2.1353 -11.5649 -1.7573 41 1 1.3533 -9.5372 1.5376 42 1 2.4362 -10.6788 0.5753 43 1 4.3650 -9.0486 0.8129 44 1 3.2817 -7.9075 1.7752 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292020749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:00 Heat of formation + Delta-G solvation = -51.077618 kcal Electronic energy + Delta-G solvation = -24390.779997 eV Core-core repulsion = 20887.183004 eV Total energy + Delta-G solvation = -3503.596993 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.55108 -39.08987 -38.09244 -36.03996 -33.80104 -33.42501 -31.67554 -31.13755 -30.95750 -27.63137 -26.51036 -25.10496 -22.87446 -22.74229 -21.92991 -21.41297 -20.02798 -19.34334 -17.97200 -16.99126 -16.57559 -16.06617 -15.86365 -15.55945 -15.38499 -14.88085 -14.63156 -14.45400 -14.39835 -13.79038 -13.53853 -13.25700 -13.12193 -12.96953 -12.80090 -12.17933 -12.04175 -11.90213 -11.78669 -11.61664 -11.27070 -11.14730 -10.92889 -10.89331 -10.60613 -10.35548 -10.13329 -9.93756 -9.65193 -9.17970 -9.16154 -9.00490 -8.96064 -8.75251 -8.30504 -5.94814 -3.99194 1.06794 1.15790 3.13241 3.25886 3.35524 3.40104 3.41848 3.51013 3.79289 4.10677 4.29274 4.36073 4.48818 4.49909 4.60499 4.66826 4.76137 4.80865 4.90298 5.12447 5.24233 5.35828 5.39400 5.40039 5.48204 5.61454 5.64424 5.68646 5.76641 5.78577 5.84342 5.91289 6.20205 6.24024 6.27639 6.27988 6.30815 6.71660 6.73355 6.91527 7.31102 7.75328 7.87305 7.91467 8.08458 8.40158 8.78860 9.09327 9.64281 11.16083 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020623 B = 0.002916 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.376492 B = 9601.117655 C =10209.026646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.535 6.535 13 N -0.743 5.743 14 C 0.150 3.850 15 C -0.173 4.173 16 C 0.187 3.813 17 H 0.109 0.891 18 O -0.549 6.549 19 C -0.110 4.110 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.109 4.109 25 C -0.156 4.156 26 C -0.158 4.158 27 H 0.261 0.739 28 H 0.022 0.978 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.401 0.599 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.378 0.622 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.495 -25.699 -4.042 26.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.410 6.410 13 N -0.399 5.399 14 C 0.027 3.973 15 C -0.174 4.174 16 C 0.128 3.872 17 H 0.126 0.874 18 O -0.356 6.356 19 C -0.110 4.110 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.139 4.139 23 C -0.138 4.138 24 C -0.127 4.127 25 C -0.193 4.193 26 C -0.195 4.195 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.235 0.765 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.227 0.773 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.957 -25.927 -3.974 26.694 hybrid contribution 0.269 1.160 -0.004 1.191 sum 5.226 -24.767 -3.978 25.623 Atomic orbital electron populations 1.69986 1.06057 1.26680 1.50162 1.25023 0.94821 0.99210 0.95313 0.86655 0.79547 0.83185 0.78557 1.20234 1.21304 1.20258 1.21194 0.92907 0.91038 1.51443 0.92647 1.18886 0.93159 0.89384 0.98550 1.21869 1.00693 0.91906 1.02536 1.21604 0.88595 0.85664 0.74450 1.90675 1.14813 1.87613 1.47927 1.46329 1.10303 1.05697 1.77563 1.20746 0.92721 0.81271 1.02608 1.22387 1.02994 1.00000 0.92028 1.20272 0.92147 0.88091 0.86724 0.87354 1.86586 1.41115 1.28206 1.79662 1.20467 0.97996 0.94287 0.98288 1.20948 0.95478 0.99579 0.96689 1.21174 0.97428 0.95585 0.98972 1.21181 0.99658 0.93732 0.99324 1.21119 0.95832 0.99722 0.97098 1.20890 0.98129 0.94349 0.99349 1.22998 1.00988 0.94889 1.00454 1.23034 0.95160 1.02418 0.98883 0.92908 0.95994 0.95774 0.90196 0.90282 0.76473 0.91193 0.91334 0.77281 0.86122 0.85775 0.86083 0.86070 0.86165 0.88203 0.88413 0.88231 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.54 13.29 55.43 0.74 -26.81 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.02 4.28 -27.88 -0.12 0.90 16 10 C -0.13 -2.62 5.64 -27.88 -0.16 -2.78 16 11 C 0.51 9.57 7.82 -10.98 -0.09 9.49 16 12 O -0.54 -12.50 15.96 5.56 0.09 -12.41 16 13 N -0.74 -10.04 4.89 -60.30 -0.30 -10.34 16 14 C 0.15 1.85 4.93 -4.05 -0.02 1.83 16 15 C -0.17 -1.58 1.34 -154.51 -0.21 -1.79 16 16 C 0.19 1.71 3.13 -27.88 -0.09 1.62 16 17 H 0.11 0.87 8.02 -51.93 -0.42 0.46 16 18 O -0.55 -5.87 13.04 -35.23 -0.46 -6.33 16 19 C -0.11 -1.06 4.82 -104.62 -0.50 -1.56 16 20 C -0.11 -1.14 7.78 -39.58 -0.31 -1.44 16 21 C -0.11 -1.11 10.05 -39.59 -0.40 -1.51 16 22 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 23 C -0.12 -0.98 10.05 -39.59 -0.40 -1.38 16 24 C -0.11 -0.92 9.69 -39.59 -0.38 -1.31 16 25 C -0.16 -1.20 9.90 -26.73 -0.26 -1.47 16 26 C -0.16 -1.28 9.54 -26.73 -0.26 -1.53 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.02 0.71 8.04 -51.93 -0.42 0.29 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.40 4.55 8.26 -40.82 -0.34 4.22 16 33 H 0.07 0.97 7.84 -51.92 -0.41 0.57 16 34 H 0.07 0.89 5.61 -51.93 -0.29 0.60 16 35 H 0.38 3.85 6.17 45.56 0.28 4.13 16 36 H 0.12 1.24 6.04 -52.48 -0.32 0.92 16 37 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 40 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.10 0.81 8.04 -51.93 -0.42 0.39 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -34.31 366.77 -9.51 -43.82 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.09 Total: 5.90 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -4.00 Total: -16.11 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.44 Total: -37.14 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.37 Total: -18.74 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.31 -9.51 -43.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292020749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.254 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds