Wall clock time and date at job start Tue Mar 31 2020 08:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00005 * 2 1 4 4 H 1.48497 * 109.47210 * 239.99859 * 3 2 1 5 5 H 1.48499 * 109.47089 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47025 * 119.99901 * 3 2 1 7 7 C 1.37878 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99866 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99624 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46903 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46903 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00202 * 354.80013 * 11 10 9 13 13 N 1.34782 * 120.00091 * 174.80010 * 11 10 9 14 14 C 1.46495 * 120.00230 * 184.69869 * 13 11 10 15 15 C 1.52999 * 109.47483 * 184.95461 * 14 13 11 16 16 C 1.53001 * 115.54715 * 270.84660 * 15 14 13 17 17 H 1.09001 * 109.46753 * 174.49112 * 16 15 14 18 18 O 1.42898 * 109.47545 * 54.49353 * 16 15 14 19 19 C 1.50701 * 109.47171 * 294.48870 * 16 15 14 20 20 C 1.38238 * 119.99643 * 87.90148 * 19 16 15 21 21 C 1.38233 * 119.99539 * 179.76999 * 20 19 16 22 22 C 1.38229 * 120.00358 * 0.50440 * 21 20 19 23 23 C 1.38235 * 119.99630 * 359.74639 * 22 21 20 24 24 C 1.38230 * 120.00443 * 359.97438 * 23 22 21 25 25 C 1.52995 * 117.50395 * 125.13545 * 15 14 13 26 26 C 1.52998 * 117.49778 * 56.51007 * 15 14 13 27 27 H 0.97004 * 120.00110 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47407 * 60.00317 * 9 7 2 29 29 H 1.09005 * 109.46936 * 300.00206 * 9 7 2 30 30 H 1.08998 * 109.47460 * 60.00152 * 10 9 7 31 31 H 1.09005 * 109.47027 * 299.99580 * 10 9 7 32 32 H 0.96994 * 119.99907 * 4.70211 * 13 11 10 33 33 H 1.09008 * 109.47395 * 304.95218 * 14 13 11 34 34 H 1.08996 * 109.47361 * 64.95018 * 14 13 11 35 35 H 0.96700 * 113.99825 * 299.99977 * 18 16 15 36 36 H 1.08005 * 120.00097 * 359.97438 * 20 19 16 37 37 H 1.08007 * 119.99579 * 180.23151 * 21 20 19 38 38 H 1.08001 * 119.99988 * 179.72936 * 22 21 20 39 39 H 1.08010 * 119.99562 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.00386 * 179.97438 * 24 23 22 41 41 H 1.09004 * 117.49814 * 359.97438 * 25 15 14 42 42 H 1.09000 * 117.50620 * 145.02597 * 25 15 14 43 43 H 1.08997 * 117.50231 * 214.98080 * 26 15 14 44 44 H 1.09001 * 117.50324 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 8 0.2827 -4.9693 0.0936 13 7 2.1616 -6.1319 -0.1071 14 6 1.4247 -7.3937 -0.2114 15 6 2.4110 -8.5633 -0.1949 16 6 2.9452 -8.9953 -1.5620 17 1 3.7072 -9.7631 -1.4282 18 8 3.5170 -7.8677 -2.2281 19 6 1.8148 -9.5485 -2.3910 20 6 1.0494 -8.7005 -3.1696 21 6 0.0156 -9.2086 -3.9337 22 6 -0.2595 -10.5631 -3.9113 23 6 0.5026 -11.4102 -3.1287 24 6 1.5401 -10.9030 -2.3690 25 6 2.1968 -9.6534 0.8570 26 6 3.3602 -8.6701 1.0003 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5567 -0.8902 29 1 0.6247 -2.5570 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8906 32 1 3.1315 -6.1347 -0.1142 33 1 0.7391 -7.4849 0.6311 34 1 0.8593 -7.4084 -1.1431 35 1 2.8943 -7.1438 -2.3808 36 1 1.2613 -7.6415 -3.1834 37 1 -0.5800 -8.5466 -4.5449 38 1 -1.0700 -10.9594 -4.5050 39 1 0.2874 -12.4685 -3.1109 40 1 2.1353 -11.5649 -1.7573 41 1 1.3533 -9.5372 1.5376 42 1 2.4362 -10.6788 0.5753 43 1 4.3650 -9.0486 0.8129 44 1 3.2817 -7.9075 1.7752 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292020749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:59 Heat of formation + Delta-G solvation = -74.090323 kcal Electronic energy + Delta-G solvation = -24391.777903 eV Core-core repulsion = 20887.183004 eV Total energy + Delta-G solvation = -3504.594899 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40071 -40.37702 -38.95531 -36.80814 -35.58558 -35.07047 -32.98415 -32.35754 -31.77536 -28.96975 -27.46731 -26.73216 -23.70376 -23.51937 -23.21915 -22.46359 -21.25560 -20.48244 -18.81420 -18.67764 -17.68687 -17.27896 -16.90453 -16.62599 -16.48815 -16.33758 -16.25600 -15.41025 -15.20754 -14.72616 -14.60149 -14.37554 -14.21581 -14.15398 -13.84244 -13.64894 -13.49701 -13.23177 -12.77266 -12.67036 -12.52719 -12.39155 -12.31706 -11.92802 -11.90527 -11.69602 -11.62167 -11.32651 -11.14005 -10.89019 -10.60328 -10.55880 -10.09123 -9.80985 -9.64850 -8.17704 -6.31775 0.39092 0.47744 1.42056 1.46583 1.54247 1.70710 2.13064 2.43624 2.74414 2.92066 3.15151 3.39757 3.56459 3.63005 3.72169 3.89870 3.99597 4.08077 4.11312 4.15691 4.27515 4.44948 4.50275 4.56058 4.60242 4.63970 4.74602 4.79144 4.84453 4.97340 5.02621 5.06398 5.09710 5.13153 5.25307 5.43728 5.51579 5.54665 5.61263 5.61669 5.63872 5.85804 6.08695 6.18170 6.52572 6.61316 6.86624 7.34143 7.38634 8.94728 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020623 B = 0.002916 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.376492 B = 9601.117655 C =10209.026646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.043 3.957 10 C -0.120 4.120 11 C 0.512 3.488 12 O -0.589 6.589 13 N -0.714 5.714 14 C 0.152 3.848 15 C -0.178 4.178 16 C 0.191 3.809 17 H 0.129 0.871 18 O -0.561 6.561 19 C -0.119 4.119 20 C -0.131 4.131 21 C -0.134 4.134 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.111 4.111 25 C -0.145 4.145 26 C -0.151 4.151 27 H 0.263 0.737 28 H -0.018 1.018 29 H -0.019 1.019 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.416 0.584 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.376 0.624 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.306 -27.453 -3.838 28.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.094 0.906 9 C 0.006 3.994 10 C -0.159 4.159 11 C 0.300 3.700 12 O -0.469 6.469 13 N -0.368 5.368 14 C 0.028 3.972 15 C -0.179 4.179 16 C 0.132 3.868 17 H 0.146 0.854 18 O -0.367 6.367 19 C -0.120 4.120 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.147 4.147 23 C -0.140 4.140 24 C -0.129 4.129 25 C -0.182 4.182 26 C -0.188 4.188 27 H 0.071 0.929 28 H 0.000 1.000 29 H 0.000 1.000 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.253 0.747 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.226 0.774 36 H 0.128 0.872 37 H 0.143 0.857 38 H 0.156 0.844 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.112 0.888 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.837 -27.729 -3.773 29.061 hybrid contribution -0.653 1.614 -0.079 1.743 sum 7.184 -26.115 -3.852 27.358 Atomic orbital electron populations 1.70170 1.08306 1.27855 1.51452 1.26136 0.95718 1.03935 0.94640 0.85384 0.78067 0.77370 0.79489 1.18652 1.21342 1.18721 1.21696 0.93996 0.91653 1.50841 0.90628 1.18671 0.93679 0.92450 0.94633 1.21640 0.99300 0.90159 1.04840 1.21337 0.87704 0.86743 0.74205 1.90662 1.17038 1.88355 1.50882 1.45998 1.10921 1.04827 1.75058 1.20766 0.93382 0.81620 1.01387 1.22194 1.03231 0.99541 0.92947 1.20384 0.92397 0.87905 0.86102 0.85387 1.86564 1.41497 1.28677 1.79991 1.20599 0.98117 0.94905 0.98338 1.21027 0.96510 0.99465 0.97947 1.21357 0.97752 0.96575 0.99503 1.21468 1.00273 0.93304 0.99626 1.21489 0.95294 1.00967 0.96283 1.21228 0.98281 0.94077 0.99331 1.23111 1.00535 0.95683 0.98871 1.23108 0.96085 1.02252 0.97391 0.92866 0.99980 1.00019 0.87926 0.87698 0.74662 0.92944 0.92231 0.77443 0.87208 0.85676 0.84366 0.83522 0.83524 0.88839 0.85940 0.86323 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.02 13.29 21.45 0.28 -59.74 16 2 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 3 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.54 -31.22 9.11 25.60 0.23 -30.99 16 8 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.04 2.43 4.28 29.85 0.13 2.56 16 10 C -0.12 -4.82 5.64 29.85 0.17 -4.65 16 11 C 0.51 19.73 7.82 87.66 0.69 20.42 16 12 O -0.59 -29.14 15.96 -3.04 -0.05 -29.18 16 13 N -0.71 -19.05 4.89 -463.06 -2.27 -21.31 16 14 C 0.15 3.74 4.93 86.38 0.43 4.17 16 15 C -0.18 -2.94 1.34 -52.18 -0.07 -3.01 16 16 C 0.19 3.09 3.13 29.85 0.09 3.18 16 17 H 0.13 1.59 8.02 -2.39 -0.02 1.57 16 18 O -0.56 -11.26 13.04 -148.98 -1.94 -13.20 16 19 C -0.12 -2.14 4.82 -19.87 -0.10 -2.23 16 20 C -0.13 -2.80 7.78 22.27 0.17 -2.63 16 21 C -0.13 -2.68 10.05 22.27 0.22 -2.45 16 22 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 23 C -0.12 -1.72 10.05 22.27 0.22 -1.50 16 24 C -0.11 -1.60 9.69 22.27 0.22 -1.38 16 25 C -0.14 -1.84 9.90 30.59 0.30 -1.53 16 26 C -0.15 -2.03 9.54 30.59 0.29 -1.73 16 27 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 28 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 29 H -0.02 -1.19 8.04 -2.38 -0.02 -1.21 16 30 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 31 H 0.10 3.68 8.14 -2.38 -0.02 3.66 16 32 H 0.42 8.75 8.26 -92.71 -0.77 7.99 16 33 H 0.05 1.50 7.84 -2.38 -0.02 1.48 16 34 H 0.06 1.62 5.61 -2.39 -0.01 1.61 16 35 H 0.38 7.60 6.17 -74.06 -0.46 7.14 16 36 H 0.11 2.45 6.04 -2.91 -0.02 2.43 16 37 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 38 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 40 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 41 H 0.09 1.35 8.04 -2.39 -0.02 1.33 16 42 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -78.26 366.77 1.53 -76.73 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -0.21 Total: 23.68 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 3.68 Total: -23.61 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -1.98 Total: -81.05 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -1.99 Total: -42.39 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -78.26 1.53 -76.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292020749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.640 kcal (2) G-P(sol) polarization free energy of solvation -78.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds