Wall clock time and date at job start Tue Mar 31 2020 08:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00463 * 2 1 4 4 H 1.48493 * 109.47088 * 270.00200 * 3 2 1 5 5 H 1.48497 * 109.46814 * 30.00163 * 3 2 1 6 6 H 1.48503 * 109.46828 * 149.99911 * 3 2 1 7 7 C 1.37888 * 119.99434 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99565 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99824 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46565 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47082 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99717 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99985 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99720 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47007 * 89.99940 * 14 13 11 16 16 C 1.38274 * 119.94301 * 90.00237 * 15 14 13 17 17 C 1.38141 * 120.05552 * 180.27916 * 16 15 14 18 18 C 1.38738 * 119.94395 * 359.44290 * 17 16 15 19 19 O 1.35897 * 120.05494 * 180.25974 * 18 17 16 20 20 C 1.38729 * 119.88657 * 0.52992 * 18 17 16 21 21 C 1.38149 * 119.94477 * 359.75178 * 20 18 17 22 22 C 1.46490 * 120.00143 * 0.02562 * 13 11 10 23 23 C 1.53008 * 109.47141 * 269.99776 * 22 13 11 24 24 C 1.53000 * 117.49957 * 243.62603 * 23 22 13 25 25 C 1.52994 * 117.50189 * 175.00000 * 23 22 13 26 26 H 0.97004 * 119.99688 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47251 * 60.00390 * 9 7 2 28 28 H 1.08994 * 109.47371 * 299.99833 * 9 7 2 29 29 H 1.09001 * 109.47382 * 60.00108 * 10 9 7 30 30 H 1.09002 * 109.47207 * 299.99639 * 10 9 7 31 31 H 1.08996 * 109.47213 * 330.00271 * 14 13 11 32 32 H 1.09002 * 109.46984 * 209.99999 * 14 13 11 33 33 H 1.08002 * 119.96836 * 359.97438 * 16 15 14 34 34 H 1.07998 * 120.02987 * 179.70379 * 17 16 15 35 35 H 0.96705 * 113.99994 * 270.27208 * 19 18 17 36 36 H 1.07998 * 120.02644 * 179.72419 * 20 18 17 37 37 H 1.07996 * 119.96812 * 179.97438 * 21 20 18 38 38 H 1.09001 * 109.47590 * 29.99977 * 22 13 11 39 39 H 1.09001 * 109.47681 * 149.99851 * 22 13 11 40 40 H 1.09001 * 115.54664 * 29.32875 * 23 22 13 41 41 H 1.08997 * 117.49790 * 359.97438 * 24 23 22 42 42 H 1.08997 * 117.49865 * 145.02166 * 24 23 22 43 43 H 1.09001 * 117.49890 * 214.97895 * 25 23 22 44 44 H 1.09004 * 117.49919 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 6 1.4914 -4.9673 -0.0012 12 8 0.2786 -4.9672 -0.0021 13 7 2.1652 -6.1345 -0.0018 14 6 1.4326 -7.4032 -0.0019 15 6 1.1808 -7.8377 -1.4227 16 6 2.1031 -8.6360 -2.0740 17 6 1.8773 -9.0309 -3.3783 18 6 0.7186 -8.6355 -4.0310 19 8 0.4918 -9.0271 -5.3124 20 6 -0.2054 -7.8351 -3.3751 21 6 0.0278 -7.4380 -2.0726 22 6 3.6301 -6.1346 -0.0013 23 6 4.1407 -6.1336 -1.4437 24 6 4.9446 -7.3492 -1.9094 25 6 5.6508 -6.0153 -1.6586 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8902 28 1 0.6245 -2.5571 0.8896 29 1 2.8717 -3.6045 0.8894 30 1 2.8716 -3.6045 -0.8906 31 1 0.4805 -7.2729 0.5124 32 1 2.0219 -8.1630 0.5115 33 1 3.0030 -8.9468 -1.5641 34 1 2.6002 -9.6504 -3.8883 35 1 0.8424 -8.4189 -5.9775 36 1 -1.1060 -7.5224 -3.8825 37 1 -0.6910 -6.8146 -1.5618 38 1 3.9934 -5.2450 0.5133 39 1 3.9934 -7.0249 0.5120 40 1 3.4893 -5.6513 -2.1726 41 1 5.1102 -8.1494 -1.1881 42 1 4.8223 -7.6669 -2.9448 43 1 5.9930 -5.4555 -2.5290 44 1 6.2808 -5.9385 -0.7723 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292232222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:14 Heat of formation + Delta-G solvation = -37.160874 kcal Electronic energy + Delta-G solvation = -24869.114005 eV Core-core repulsion = 21366.120488 eV Total energy + Delta-G solvation = -3502.993518 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.18806 -39.23734 -37.47763 -36.88215 -34.69668 -33.48425 -31.49322 -31.00884 -30.36034 -27.20827 -26.37422 -24.72527 -22.98962 -22.40641 -21.97215 -20.98735 -20.82812 -18.60198 -18.46087 -16.96819 -16.44940 -16.07553 -15.88531 -15.51423 -15.39250 -14.90156 -14.77786 -14.41457 -14.06779 -13.70781 -13.45848 -13.09301 -12.75505 -12.58468 -12.40072 -12.22187 -12.09309 -11.80271 -11.63442 -11.53575 -11.41990 -11.13315 -10.93037 -10.59649 -10.57205 -10.40673 -10.08415 -9.89277 -9.60538 -9.20512 -9.05450 -8.98003 -8.60399 -8.40227 -8.31114 -5.95818 -3.99919 1.13597 1.35672 3.13448 3.25484 3.33070 3.39362 3.41830 3.68286 3.77807 4.16378 4.46797 4.61838 4.73612 4.79973 4.88077 4.92162 4.96955 5.08491 5.22563 5.36803 5.39266 5.48469 5.49994 5.51997 5.59580 5.64903 5.73533 5.79960 5.85293 6.00251 6.03381 6.18195 6.22662 6.25445 6.27771 6.39783 6.61995 6.74277 6.80001 6.90796 7.53192 7.72254 7.75050 7.86994 8.07557 8.39260 8.74063 9.08536 9.63531 11.15131 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.003777 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.117831 B = 7411.562915 C = 8104.213524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.127 4.127 11 C 0.514 3.486 12 O -0.530 6.530 13 N -0.617 5.617 14 C 0.155 3.845 15 C -0.108 4.108 16 C -0.083 4.083 17 C -0.153 4.153 18 C 0.101 3.899 19 O -0.503 6.503 20 C -0.148 4.148 21 C -0.077 4.077 22 C 0.143 3.857 23 C -0.164 4.164 24 C -0.179 4.179 25 C -0.176 4.176 26 H 0.260 0.740 27 H 0.022 0.978 28 H 0.023 0.977 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.388 0.612 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.147 -19.497 -4.814 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.167 4.167 11 C 0.304 3.696 12 O -0.405 6.405 13 N -0.351 5.351 14 C 0.032 3.968 15 C -0.109 4.109 16 C -0.102 4.102 17 C -0.171 4.171 18 C 0.056 3.944 19 O -0.313 6.313 20 C -0.167 4.167 21 C -0.095 4.095 22 C 0.019 3.981 23 C -0.183 4.183 24 C -0.216 4.216 25 C -0.213 4.213 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.244 0.756 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.033 -19.832 -4.505 21.866 hybrid contribution 0.796 1.297 -0.533 1.612 sum 8.829 -18.535 -5.038 21.139 Atomic orbital electron populations 1.69997 1.06046 1.26534 1.50259 1.25016 0.94800 0.99167 0.95331 0.86613 0.79812 0.83608 0.78057 1.20705 1.21227 1.19873 1.21216 0.92895 0.91016 1.51291 0.92662 1.18892 0.93160 0.89422 0.98490 1.21895 1.00647 0.91908 1.02260 1.21597 0.88431 0.85498 0.74054 1.90641 1.14354 1.87199 1.48261 1.48175 1.06050 1.05477 1.75407 1.20272 0.98605 0.85650 0.92253 1.20297 0.94850 0.98221 0.97542 1.20906 0.98337 0.96978 0.93970 1.21299 0.97083 1.02679 0.96083 1.18502 0.93829 0.96606 0.85418 1.84801 1.81578 1.51241 1.13709 1.21449 1.00393 0.98765 0.96085 1.21187 0.97185 0.97289 0.93867 1.21140 0.79771 1.03096 0.94062 1.22835 0.94116 1.02539 0.98820 1.23019 1.04899 0.91588 1.02048 1.22948 0.94631 1.00324 1.03438 0.92983 0.95959 0.95895 0.90389 0.90288 0.89121 0.90294 0.85808 0.85886 0.75615 0.85610 0.84780 0.89234 0.90728 0.87545 0.89046 0.89170 0.88821 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.57 4.19 -27.88 -0.12 -2.69 16 11 C 0.51 9.68 7.67 -10.98 -0.08 9.60 16 12 O -0.53 -11.94 15.08 5.55 0.08 -11.85 16 13 N -0.62 -8.59 2.46 -175.06 -0.43 -9.02 16 14 C 0.15 1.91 5.57 -5.20 -0.03 1.88 16 15 C -0.11 -1.35 5.46 -104.60 -0.57 -1.92 16 16 C -0.08 -0.88 8.31 -39.60 -0.33 -1.21 16 17 C -0.15 -1.64 9.99 -39.43 -0.39 -2.04 16 18 C 0.10 1.20 6.70 -39.22 -0.26 0.94 16 19 O -0.50 -5.35 13.50 -19.42 -0.26 -5.61 16 20 C -0.15 -1.93 9.99 -39.43 -0.39 -2.32 16 21 C -0.08 -1.08 9.69 -39.61 -0.38 -1.46 16 22 C 0.14 1.55 5.54 -4.04 -0.02 1.52 16 23 C -0.16 -1.73 5.46 -90.62 -0.49 -2.22 16 24 C -0.18 -1.48 8.06 -26.73 -0.22 -1.70 16 25 C -0.18 -1.57 10.25 -26.73 -0.27 -1.85 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 28 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 29 H 0.08 1.44 7.40 -51.93 -0.38 1.06 16 30 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 31 H 0.09 1.25 7.36 -51.93 -0.38 0.87 16 32 H 0.08 0.74 7.83 -51.93 -0.41 0.33 16 33 H 0.12 1.06 6.69 -52.49 -0.35 0.71 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.39 2.38 9.06 45.56 0.41 2.79 16 36 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 37 H 0.13 2.10 7.57 -52.49 -0.40 1.70 16 38 H 0.09 1.00 6.44 -51.93 -0.33 0.66 16 39 H 0.07 0.63 7.63 -51.93 -0.40 0.23 16 40 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.09 0.64 7.90 -51.93 -0.41 0.23 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -34.25 367.75 -9.44 -43.69 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.99 Total: 3.41 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -4.10 Total: -16.13 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.31 Total: -35.63 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.18 Total: -17.46 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.25 -9.44 -43.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292232222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.527 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds