Wall clock time and date at job start Tue Mar 31 2020 08:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00463 * 2 1 4 4 H 1.48493 * 109.47088 * 270.00200 * 3 2 1 5 5 H 1.48497 * 109.46814 * 30.00163 * 3 2 1 6 6 H 1.48503 * 109.46828 * 149.99911 * 3 2 1 7 7 C 1.37888 * 119.99434 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99565 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99824 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46565 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47082 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99717 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99985 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99720 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47007 * 89.99940 * 14 13 11 16 16 C 1.38274 * 119.94301 * 90.00237 * 15 14 13 17 17 C 1.38141 * 120.05552 * 180.27916 * 16 15 14 18 18 C 1.38738 * 119.94395 * 359.44290 * 17 16 15 19 19 O 1.35897 * 120.05494 * 180.25974 * 18 17 16 20 20 C 1.38729 * 119.88657 * 0.52992 * 18 17 16 21 21 C 1.38149 * 119.94477 * 359.75178 * 20 18 17 22 22 C 1.46490 * 120.00143 * 0.02562 * 13 11 10 23 23 C 1.53008 * 109.47141 * 269.99776 * 22 13 11 24 24 C 1.53000 * 117.49957 * 243.62603 * 23 22 13 25 25 C 1.52994 * 117.50189 * 175.00000 * 23 22 13 26 26 H 0.97004 * 119.99688 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47251 * 60.00390 * 9 7 2 28 28 H 1.08994 * 109.47371 * 299.99833 * 9 7 2 29 29 H 1.09001 * 109.47382 * 60.00108 * 10 9 7 30 30 H 1.09002 * 109.47207 * 299.99639 * 10 9 7 31 31 H 1.08996 * 109.47213 * 330.00271 * 14 13 11 32 32 H 1.09002 * 109.46984 * 209.99999 * 14 13 11 33 33 H 1.08002 * 119.96836 * 359.97438 * 16 15 14 34 34 H 1.07998 * 120.02987 * 179.70379 * 17 16 15 35 35 H 0.96705 * 113.99994 * 270.27208 * 19 18 17 36 36 H 1.07998 * 120.02644 * 179.72419 * 20 18 17 37 37 H 1.07996 * 119.96812 * 179.97438 * 21 20 18 38 38 H 1.09001 * 109.47590 * 29.99977 * 22 13 11 39 39 H 1.09001 * 109.47681 * 149.99851 * 22 13 11 40 40 H 1.09001 * 115.54664 * 29.32875 * 23 22 13 41 41 H 1.08997 * 117.49790 * 359.97438 * 24 23 22 42 42 H 1.08997 * 117.49865 * 145.02166 * 24 23 22 43 43 H 1.09001 * 117.49890 * 214.97895 * 25 23 22 44 44 H 1.09004 * 117.49919 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 6 1.4914 -4.9673 -0.0012 12 8 0.2786 -4.9672 -0.0021 13 7 2.1652 -6.1345 -0.0018 14 6 1.4326 -7.4032 -0.0019 15 6 1.1808 -7.8377 -1.4227 16 6 2.1031 -8.6360 -2.0740 17 6 1.8773 -9.0309 -3.3783 18 6 0.7186 -8.6355 -4.0310 19 8 0.4918 -9.0271 -5.3124 20 6 -0.2054 -7.8351 -3.3751 21 6 0.0278 -7.4380 -2.0726 22 6 3.6301 -6.1346 -0.0013 23 6 4.1407 -6.1336 -1.4437 24 6 4.9446 -7.3492 -1.9094 25 6 5.6508 -6.0153 -1.6586 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8902 28 1 0.6245 -2.5571 0.8896 29 1 2.8717 -3.6045 0.8894 30 1 2.8716 -3.6045 -0.8906 31 1 0.4805 -7.2729 0.5124 32 1 2.0219 -8.1630 0.5115 33 1 3.0030 -8.9468 -1.5641 34 1 2.6002 -9.6504 -3.8883 35 1 0.8424 -8.4189 -5.9775 36 1 -1.1060 -7.5224 -3.8825 37 1 -0.6910 -6.8146 -1.5618 38 1 3.9934 -5.2450 0.5133 39 1 3.9934 -7.0249 0.5120 40 1 3.4893 -5.6513 -2.1726 41 1 5.1102 -8.1494 -1.1881 42 1 4.8223 -7.6669 -2.9448 43 1 5.9930 -5.4555 -2.5290 44 1 6.2808 -5.9385 -0.7723 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292232222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:13 Heat of formation + Delta-G solvation = -58.905924 kcal Electronic energy + Delta-G solvation = -24870.056942 eV Core-core repulsion = 21366.120488 eV Total energy + Delta-G solvation = -3503.936454 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.31878 -40.34334 -38.46387 -37.75049 -35.86248 -35.55360 -33.19212 -31.94277 -31.68259 -28.22767 -27.99621 -26.19885 -23.87544 -23.64137 -22.99564 -22.27852 -21.72083 -19.94560 -19.34368 -18.78321 -17.59671 -17.45628 -17.10348 -16.55695 -16.44368 -16.34728 -16.01498 -15.82313 -15.16427 -14.67574 -14.56496 -14.34905 -14.21981 -14.04363 -13.61641 -13.39252 -13.27248 -13.10199 -12.90740 -12.79079 -12.54798 -12.41034 -12.29278 -12.20746 -11.93977 -11.60582 -11.42932 -11.30767 -11.18582 -10.76605 -10.64908 -10.56748 -9.91743 -9.72722 -9.42641 -8.18299 -6.32386 0.20217 0.41539 1.41185 1.43995 1.54998 1.71475 2.08201 2.42579 2.77012 3.04052 3.14676 3.32085 3.66473 3.87250 3.94675 4.01037 4.07267 4.13530 4.20241 4.30806 4.42081 4.47589 4.50118 4.52092 4.66918 4.69150 4.75076 4.85750 4.92238 4.95238 5.05355 5.09330 5.15838 5.34058 5.38198 5.40292 5.45778 5.47981 5.62364 5.65129 5.69340 5.84742 5.90618 6.17578 6.42697 6.81495 6.85905 7.30868 7.38060 8.94382 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.003777 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.117831 B = 7411.562915 C = 8104.213524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.542 4.542 8 H 0.074 0.926 9 C 0.046 3.954 10 C -0.113 4.113 11 C 0.511 3.489 12 O -0.582 6.582 13 N -0.600 5.600 14 C 0.153 3.847 15 C -0.116 4.116 16 C -0.069 4.069 17 C -0.148 4.148 18 C 0.100 3.900 19 O -0.510 6.510 20 C -0.168 4.168 21 C -0.102 4.102 22 C 0.137 3.863 23 C -0.183 4.183 24 C -0.158 4.158 25 C -0.173 4.173 26 H 0.262 0.738 27 H -0.023 1.023 28 H -0.018 1.018 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.124 0.876 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.408 0.592 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.514 -21.269 -4.898 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.580 4.580 8 H 0.093 0.907 9 C 0.008 3.992 10 C -0.153 4.153 11 C 0.301 3.699 12 O -0.461 6.461 13 N -0.332 5.332 14 C 0.031 3.969 15 C -0.117 4.117 16 C -0.087 4.087 17 C -0.166 4.166 18 C 0.055 3.945 19 O -0.323 6.323 20 C -0.186 4.186 21 C -0.120 4.120 22 C 0.015 3.985 23 C -0.203 4.203 24 C -0.195 4.195 25 C -0.210 4.210 26 H 0.071 0.929 27 H -0.004 1.004 28 H 0.001 0.999 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.175 0.825 34 H 0.170 0.830 35 H 0.267 0.733 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.133 0.867 40 H 0.090 0.910 41 H 0.135 0.865 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.466 -21.643 -4.607 25.398 hybrid contribution -0.573 1.775 -0.586 1.955 sum 11.892 -19.868 -5.193 23.731 Atomic orbital electron populations 1.70183 1.08333 1.27758 1.51497 1.26128 0.95690 1.03890 0.94603 0.85341 0.78778 0.77761 0.78507 1.19795 1.21128 1.17741 1.21694 0.93905 0.91599 1.50765 0.90739 1.18657 0.93602 0.92529 0.94410 1.21608 0.99153 0.90561 1.03959 1.21310 0.87669 0.86720 0.74210 1.90631 1.16438 1.88016 1.51014 1.48054 1.07619 1.04463 1.73043 1.20457 0.98300 0.85498 0.92612 1.20317 0.94787 0.99004 0.97600 1.21171 0.98430 0.95323 0.93797 1.21617 0.96787 1.02137 0.96102 1.18600 0.93893 0.95955 0.86023 1.84747 1.82034 1.51923 1.13636 1.21506 1.01167 0.99988 0.95970 1.21078 0.98012 0.98272 0.94685 1.21469 0.77133 1.05013 0.94876 1.22595 0.94763 1.05194 0.97713 1.23138 1.02167 0.91409 1.02786 1.23023 0.93217 1.00890 1.03873 0.92895 1.00444 0.99948 0.88079 0.88901 0.91610 0.85761 0.82493 0.83041 0.73321 0.86061 0.88097 0.89485 0.86703 0.90979 0.86451 0.88968 0.89404 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.13 13.29 21.45 0.28 -59.84 16 2 C -0.01 -0.34 5.46 84.66 0.46 0.13 16 3 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.54 -31.22 9.11 25.60 0.23 -30.99 16 8 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 9 C 0.05 2.59 4.26 29.85 0.13 2.72 16 10 C -0.11 -4.69 4.19 29.85 0.13 -4.57 16 11 C 0.51 20.10 7.67 87.66 0.67 20.77 16 12 O -0.58 -28.54 15.08 -3.04 -0.05 -28.59 16 13 N -0.60 -16.21 2.46 -826.16 -2.03 -18.24 16 14 C 0.15 3.61 5.57 85.63 0.48 4.09 16 15 C -0.12 -2.82 5.46 -19.85 -0.11 -2.93 16 16 C -0.07 -1.23 8.31 22.26 0.18 -1.05 16 17 C -0.15 -2.72 9.99 22.37 0.22 -2.50 16 18 C 0.10 2.28 6.70 22.51 0.15 2.43 16 19 O -0.51 -10.09 13.50 -92.39 -1.25 -11.33 16 20 C -0.17 -4.60 9.99 22.37 0.22 -4.37 16 21 C -0.10 -3.07 9.69 22.25 0.22 -2.85 16 22 C 0.14 2.53 5.54 86.38 0.48 3.01 16 23 C -0.18 -3.36 5.46 -10.79 -0.06 -3.42 16 24 C -0.16 -1.87 8.06 30.59 0.25 -1.62 16 25 C -0.17 -2.46 10.25 30.59 0.31 -2.15 16 26 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 27 H -0.02 -1.48 8.10 -2.39 -0.02 -1.50 16 28 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 29 H 0.10 3.68 7.40 -2.39 -0.02 3.67 16 30 H 0.09 3.56 8.03 -2.39 -0.02 3.54 16 31 H 0.07 1.90 7.36 -2.39 -0.02 1.89 16 32 H 0.12 1.81 7.83 -2.39 -0.02 1.79 16 33 H 0.16 1.75 6.69 -2.91 -0.02 1.74 16 34 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.41 4.34 9.06 -74.05 -0.67 3.67 16 36 H 0.12 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.10 3.65 7.57 -2.91 -0.02 3.62 16 38 H 0.09 1.67 6.44 -2.39 -0.02 1.66 16 39 H 0.11 1.26 7.63 -2.39 -0.02 1.24 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.12 0.83 7.90 -2.39 -0.02 0.82 16 42 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -81.12 367.75 3.28 -77.84 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.33 Total: 16.88 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 3.97 Total: -23.29 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -1.74 Total: -78.08 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -1.29 Total: -39.92 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -81.12 3.28 -77.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292232222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.932 kcal (2) G-P(sol) polarization free energy of solvation -81.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds