Wall clock time and date at job start Tue Mar 31 2020 08:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99559 * 2 1 4 4 H 1.48493 * 109.47276 * 269.99961 * 3 2 1 5 5 H 1.48496 * 109.46893 * 30.00501 * 3 2 1 6 6 H 1.48505 * 109.47046 * 149.99947 * 3 2 1 7 7 C 1.37870 * 120.00582 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00545 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99898 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47336 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47336 * 180.02562 * 10 9 7 12 12 O 1.21298 * 119.99914 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00326 * 179.97438 * 11 10 9 14 14 C 1.40109 * 120.00406 * 175.30634 * 13 11 10 15 15 C 1.38847 * 120.00845 * 35.96025 * 14 13 11 16 16 C 1.38089 * 119.98063 * 180.02562 * 15 14 13 17 17 C 1.38719 * 120.01737 * 0.02879 * 16 15 14 18 18 O 1.35974 * 119.98748 * 179.97438 * 17 16 15 19 19 C 1.42900 * 116.99627 * 5.34664 * 18 17 16 20 20 C 1.55248 * 110.57576 * 271.08322 * 19 18 17 21 21 C 1.54894 * 102.58540 * 203.33979 * 20 19 18 22 22 C 1.54268 * 104.31093 * 37.93351 * 21 20 19 23 23 C 1.53878 * 106.60202 * 336.32251 * 22 21 20 24 24 C 1.38725 * 120.02745 * 0.22837 * 17 16 15 25 25 C 1.38085 * 120.01618 * 359.49036 * 24 17 16 26 26 H 0.96992 * 120.00857 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47350 * 60.00406 * 9 7 2 28 28 H 1.09008 * 109.47186 * 300.00268 * 9 7 2 29 29 H 1.09002 * 109.47487 * 60.00222 * 10 9 7 30 30 H 1.09000 * 109.47077 * 299.99814 * 10 9 7 31 31 H 0.97003 * 119.99633 * 355.31793 * 13 11 10 32 32 H 1.08003 * 120.01005 * 0.02562 * 15 14 13 33 33 H 1.08003 * 119.99172 * 179.97438 * 16 15 14 34 34 H 1.08996 * 110.43650 * 33.66816 * 19 18 17 35 35 H 1.08999 * 110.89726 * 85.05593 * 20 19 18 36 36 H 1.08996 * 110.76423 * 321.57288 * 20 19 18 37 37 H 1.08996 * 110.48859 * 279.19088 * 21 20 19 38 38 H 1.09001 * 110.48289 * 156.67628 * 21 20 19 39 39 H 1.09007 * 110.03135 * 95.60940 * 22 21 20 40 40 H 1.08997 * 110.03219 * 216.98577 * 22 21 20 41 41 H 1.08995 * 110.02901 * 119.28068 * 23 22 21 42 42 H 1.08998 * 110.03267 * 240.66646 * 23 22 21 43 43 H 1.07998 * 119.98842 * 179.72514 * 24 17 16 44 44 H 1.07998 * 120.01088 * 180.23263 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4921 -4.9671 -0.0012 12 8 0.2791 -4.9672 -0.0011 13 7 2.1660 -6.1343 -0.0018 14 6 1.4691 -7.3458 0.0969 15 6 0.2322 -7.4874 -0.5178 16 6 -0.4544 -8.6815 -0.4197 17 6 0.0911 -9.7391 0.2932 18 8 -0.5857 -10.9145 0.3898 19 6 -1.7949 -11.0305 -0.3628 20 6 -3.0050 -10.5236 0.4672 21 6 -4.1987 -11.2559 -0.1946 22 6 -3.6472 -12.6566 -0.5320 23 6 -2.1188 -12.5132 -0.6389 24 6 1.3244 -9.5964 0.9120 25 6 2.0148 -8.4049 0.8099 26 1 -0.4851 0.8399 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.8722 -3.6043 0.8895 30 1 2.8721 -3.6042 -0.8905 31 1 3.1336 -6.1356 -0.0704 32 1 -0.1928 -6.6639 -1.0724 33 1 -1.4167 -8.7917 -0.8974 34 1 -1.7155 -10.4767 -1.2983 35 1 -3.1151 -9.4432 0.3741 36 1 -2.9052 -10.8142 1.5130 37 1 -4.5075 -10.7386 -1.1029 38 1 -5.0333 -11.3322 0.5024 39 1 -3.9017 -13.3592 0.2616 40 1 -4.0580 -13.0009 -1.4810 41 1 -1.6317 -13.1462 0.1028 42 1 -1.7872 -12.7885 -1.6400 43 1 1.7465 -10.4188 1.4706 44 1 2.9767 -8.2952 1.2885 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292361649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:46 Heat of formation + Delta-G solvation = -68.586732 kcal Electronic energy + Delta-G solvation = -23573.109369 eV Core-core repulsion = 20068.753124 eV Total energy + Delta-G solvation = -3504.356245 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.60543 -39.66734 -37.96426 -36.40577 -34.01972 -33.51399 -31.20376 -30.97503 -29.27248 -28.92125 -27.80179 -25.65481 -23.25215 -22.79671 -21.34605 -20.90707 -20.44437 -19.64981 -18.51856 -17.38562 -16.94464 -16.23713 -15.89110 -15.61195 -15.20275 -14.93576 -14.50989 -14.43050 -14.38051 -13.72132 -13.54058 -13.29892 -13.15609 -12.87831 -12.52330 -12.43733 -12.20172 -12.01597 -11.61043 -11.49898 -11.29810 -11.19563 -10.97361 -10.92756 -10.89697 -10.63461 -10.62006 -10.00837 -9.74581 -9.64146 -9.24821 -9.10513 -8.92636 -8.35185 -7.62038 -5.98761 -4.03484 1.31673 1.43872 3.04720 3.09005 3.31883 3.37098 3.39569 3.43736 3.83986 4.16517 4.22477 4.45360 4.51485 4.75869 4.85313 4.95076 5.05258 5.07738 5.15826 5.25572 5.28657 5.34159 5.36326 5.41685 5.49155 5.53753 5.64634 5.70597 5.74796 5.83591 5.94208 5.99260 6.05747 6.14588 6.15338 6.42478 6.44938 6.53250 6.82830 6.98447 7.41747 7.70294 7.73085 7.81052 8.03107 8.34262 8.62280 9.04630 9.60344 11.12170 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.002326 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.577966 B =12035.777960 C =12901.328063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.509 3.491 12 O -0.517 6.517 13 N -0.685 5.685 14 C 0.119 3.881 15 C -0.081 4.081 16 C -0.189 4.189 17 C 0.107 3.893 18 O -0.310 6.310 19 C 0.078 3.922 20 C -0.149 4.149 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.136 4.136 25 C -0.111 4.111 26 H 0.261 0.739 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.408 0.592 32 H 0.143 0.857 33 H 0.129 0.871 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.130 0.870 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.116 -26.296 -1.043 26.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.299 3.701 12 O -0.390 6.390 13 N -0.332 5.332 14 C 0.024 3.976 15 C -0.101 4.101 16 C -0.208 4.208 17 C 0.062 3.938 18 O -0.224 6.224 19 C 0.021 3.979 20 C -0.187 4.187 21 C -0.162 4.162 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.132 4.132 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.243 0.757 32 H 0.160 0.840 33 H 0.147 0.853 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.148 0.852 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.108 -26.261 -0.921 26.361 hybrid contribution 0.814 1.094 -0.109 1.368 sum -1.294 -25.167 -1.029 25.221 Atomic orbital electron populations 1.69988 1.06066 1.26655 1.50088 1.25026 0.94837 0.99275 0.95255 0.86578 0.79766 0.83451 0.78076 1.20654 1.21210 1.19872 1.21201 0.92954 0.90940 1.51538 0.92536 1.18916 0.93149 0.89325 0.98707 1.21903 1.00817 0.91314 1.02829 1.21816 0.88831 0.85456 0.74033 1.90665 1.14395 1.87203 1.46779 1.43877 1.10551 1.04180 1.74600 1.17774 0.94466 0.86589 0.98745 1.21179 0.94176 0.97072 0.97716 1.21175 1.01760 0.93498 1.04373 1.18924 0.92242 0.85293 0.97380 1.86083 1.36584 1.33325 1.66403 1.23417 0.82623 0.97450 0.94368 1.23111 0.94187 1.00843 1.00515 1.22285 0.97589 0.95532 1.00817 1.22091 0.94318 0.97596 1.01952 1.22157 0.96401 0.94647 1.02532 1.20125 0.93342 0.98459 1.03583 1.20717 1.00931 0.92579 0.98974 0.92907 0.95749 0.95742 0.89841 0.89890 0.75698 0.83957 0.85333 0.90206 0.90663 0.90201 0.91236 0.91077 0.91354 0.91381 0.90288 0.90922 0.85193 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 10 C -0.13 -2.53 5.64 -27.88 -0.16 -2.69 16 11 C 0.51 9.61 7.67 -10.99 -0.08 9.53 16 12 O -0.52 -11.81 13.47 5.54 0.07 -11.74 16 13 N -0.69 -9.87 5.34 -9.83 -0.05 -9.92 16 14 C 0.12 1.73 6.29 -83.62 -0.53 1.20 16 15 C -0.08 -1.26 8.69 -39.41 -0.34 -1.61 16 16 C -0.19 -2.53 8.83 -39.46 -0.35 -2.88 16 17 C 0.11 1.37 6.66 -39.22 -0.26 1.10 16 18 O -0.31 -3.65 9.86 -19.66 -0.19 -3.84 16 19 C 0.08 0.73 2.68 -24.88 -0.07 0.66 16 20 C -0.15 -1.33 6.41 -24.54 -0.16 -1.48 16 21 C -0.12 -0.87 6.82 -25.07 -0.17 -1.04 16 22 C -0.12 -0.76 6.80 -25.61 -0.17 -0.93 16 23 C -0.12 -0.89 6.56 -25.61 -0.17 -1.05 16 24 C -0.14 -1.62 9.98 -39.46 -0.39 -2.01 16 25 C -0.11 -1.34 9.96 -39.41 -0.39 -1.73 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.02 0.71 8.10 -51.92 -0.42 0.29 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.41 4.35 8.83 -40.82 -0.36 3.99 16 32 H 0.14 2.50 6.29 -52.48 -0.33 2.17 16 33 H 0.13 1.51 5.47 -52.48 -0.29 1.22 16 34 H 0.08 0.73 6.27 -51.93 -0.33 0.41 16 35 H 0.07 0.72 7.60 -51.93 -0.39 0.33 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.60 8.07 -51.93 -0.42 0.19 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -33.68 360.67 -9.52 -43.20 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.73 Total: 2.53 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -3.77 Total: -15.64 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.68 Total: -36.46 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.12 Total: -15.58 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.68 -9.52 -43.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292361649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.390 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds