Wall clock time and date at job start Tue Mar 31 2020 08:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99559 * 2 1 4 4 H 1.48493 * 109.47276 * 269.99961 * 3 2 1 5 5 H 1.48496 * 109.46893 * 30.00501 * 3 2 1 6 6 H 1.48505 * 109.47046 * 149.99947 * 3 2 1 7 7 C 1.37870 * 120.00582 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00545 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99898 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47336 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47336 * 180.02562 * 10 9 7 12 12 O 1.21298 * 119.99914 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00326 * 179.97438 * 11 10 9 14 14 C 1.40109 * 120.00406 * 175.30634 * 13 11 10 15 15 C 1.38847 * 120.00845 * 35.96025 * 14 13 11 16 16 C 1.38089 * 119.98063 * 180.02562 * 15 14 13 17 17 C 1.38719 * 120.01737 * 0.02879 * 16 15 14 18 18 O 1.35974 * 119.98748 * 179.97438 * 17 16 15 19 19 C 1.42900 * 116.99627 * 5.34664 * 18 17 16 20 20 C 1.55248 * 110.57576 * 271.08322 * 19 18 17 21 21 C 1.54894 * 102.58540 * 203.33979 * 20 19 18 22 22 C 1.54268 * 104.31093 * 37.93351 * 21 20 19 23 23 C 1.53878 * 106.60202 * 336.32251 * 22 21 20 24 24 C 1.38725 * 120.02745 * 0.22837 * 17 16 15 25 25 C 1.38085 * 120.01618 * 359.49036 * 24 17 16 26 26 H 0.96992 * 120.00857 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47350 * 60.00406 * 9 7 2 28 28 H 1.09008 * 109.47186 * 300.00268 * 9 7 2 29 29 H 1.09002 * 109.47487 * 60.00222 * 10 9 7 30 30 H 1.09000 * 109.47077 * 299.99814 * 10 9 7 31 31 H 0.97003 * 119.99633 * 355.31793 * 13 11 10 32 32 H 1.08003 * 120.01005 * 0.02562 * 15 14 13 33 33 H 1.08003 * 119.99172 * 179.97438 * 16 15 14 34 34 H 1.08996 * 110.43650 * 33.66816 * 19 18 17 35 35 H 1.08999 * 110.89726 * 85.05593 * 20 19 18 36 36 H 1.08996 * 110.76423 * 321.57288 * 20 19 18 37 37 H 1.08996 * 110.48859 * 279.19088 * 21 20 19 38 38 H 1.09001 * 110.48289 * 156.67628 * 21 20 19 39 39 H 1.09007 * 110.03135 * 95.60940 * 22 21 20 40 40 H 1.08997 * 110.03219 * 216.98577 * 22 21 20 41 41 H 1.08995 * 110.02901 * 119.28068 * 23 22 21 42 42 H 1.08998 * 110.03267 * 240.66646 * 23 22 21 43 43 H 1.07998 * 119.98842 * 179.72514 * 24 17 16 44 44 H 1.07998 * 120.01088 * 180.23263 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4921 -4.9671 -0.0012 12 8 0.2791 -4.9672 -0.0011 13 7 2.1660 -6.1343 -0.0018 14 6 1.4691 -7.3458 0.0969 15 6 0.2322 -7.4874 -0.5178 16 6 -0.4544 -8.6815 -0.4197 17 6 0.0911 -9.7391 0.2932 18 8 -0.5857 -10.9145 0.3898 19 6 -1.7949 -11.0305 -0.3628 20 6 -3.0050 -10.5236 0.4672 21 6 -4.1987 -11.2559 -0.1946 22 6 -3.6472 -12.6566 -0.5320 23 6 -2.1188 -12.5132 -0.6389 24 6 1.3244 -9.5964 0.9120 25 6 2.0148 -8.4049 0.8099 26 1 -0.4851 0.8399 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.8722 -3.6043 0.8895 30 1 2.8721 -3.6042 -0.8905 31 1 3.1336 -6.1356 -0.0704 32 1 -0.1928 -6.6639 -1.0724 33 1 -1.4167 -8.7917 -0.8974 34 1 -1.7155 -10.4767 -1.2983 35 1 -3.1151 -9.4432 0.3741 36 1 -2.9052 -10.8142 1.5130 37 1 -4.5075 -10.7386 -1.1029 38 1 -5.0333 -11.3322 0.5024 39 1 -3.9017 -13.3592 0.2616 40 1 -4.0580 -13.0009 -1.4810 41 1 -1.6317 -13.1462 0.1028 42 1 -1.7872 -12.7885 -1.6400 43 1 1.7465 -10.4188 1.4706 44 1 2.9767 -8.2952 1.2885 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292361649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:45 Heat of formation + Delta-G solvation = -88.859317 kcal Electronic energy + Delta-G solvation = -23573.988454 eV Core-core repulsion = 20068.753124 eV Total energy + Delta-G solvation = -3505.235330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69611 -40.83736 -38.98394 -37.29738 -35.59112 -35.27762 -33.05156 -32.08001 -30.23494 -29.66545 -28.72386 -27.49233 -24.50573 -24.07567 -22.80373 -21.63866 -21.30142 -20.96937 -19.45299 -18.86348 -18.44287 -17.63373 -17.03074 -16.66405 -16.47442 -16.27628 -16.00425 -15.46938 -15.41479 -14.99396 -14.57796 -14.34899 -14.30253 -14.12457 -14.00175 -13.57128 -13.46590 -13.25754 -13.01269 -12.81704 -12.47988 -12.23125 -12.16381 -12.07731 -11.92604 -11.82083 -11.65024 -11.57475 -11.32212 -11.30054 -10.90210 -10.66462 -10.56521 -10.00472 -8.71758 -8.18569 -6.32587 0.28152 0.34818 1.42300 1.44925 1.55799 1.63959 2.10513 2.24537 2.43885 2.77879 3.14706 3.51512 3.58128 3.77996 3.85802 3.92695 4.01890 4.14413 4.31153 4.41092 4.42302 4.45942 4.49493 4.50010 4.54578 4.62186 4.68978 4.82511 4.87119 5.01119 5.01534 5.07019 5.13190 5.19536 5.21571 5.35971 5.37721 5.40162 5.45034 5.50370 5.61891 5.83348 5.87415 6.16552 6.46136 6.51542 6.86025 7.24903 7.37826 8.94099 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.002326 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.577966 B =12035.777960 C =12901.328063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.254 1.254 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.041 3.959 10 C -0.116 4.116 11 C 0.510 3.490 12 O -0.568 6.568 13 N -0.660 5.660 14 C 0.094 3.906 15 C -0.105 4.105 16 C -0.195 4.195 17 C 0.107 3.893 18 O -0.314 6.314 19 C 0.069 3.931 20 C -0.151 4.151 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.135 4.135 25 C -0.095 4.095 26 H 0.263 0.737 27 H -0.017 1.017 28 H -0.018 1.018 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.429 0.571 32 H 0.111 0.889 33 H 0.135 0.865 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.158 0.842 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.366 -27.868 -0.628 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.178 1.178 7 C -0.580 4.580 8 H 0.096 0.904 9 C 0.004 3.996 10 C -0.156 4.156 11 C 0.300 3.700 12 O -0.446 6.446 13 N -0.308 5.308 14 C 0.000 4.000 15 C -0.125 4.125 16 C -0.214 4.214 17 C 0.061 3.939 18 O -0.228 6.228 19 C 0.013 3.987 20 C -0.189 4.189 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.115 4.115 26 H 0.071 0.929 27 H 0.002 0.998 28 H 0.000 1.000 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.268 0.732 32 H 0.129 0.871 33 H 0.153 0.847 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.175 0.825 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.436 -27.886 -0.511 27.894 hybrid contribution -0.019 1.450 -0.233 1.469 sum 0.416 -26.436 -0.744 26.450 Atomic orbital electron populations 1.70172 1.08331 1.27809 1.51528 1.26147 0.95724 1.04006 0.94691 0.85315 0.78686 0.77703 0.78507 1.19719 1.21315 1.17816 1.21716 0.94091 0.91511 1.50676 0.90387 1.18702 0.93726 0.92441 0.94772 1.21657 0.99324 0.89199 1.05390 1.21607 0.88062 0.86533 0.73789 1.90663 1.16549 1.87937 1.49470 1.43450 1.11414 1.02966 1.72966 1.17957 0.94600 0.87158 1.00302 1.21068 0.95429 0.97066 0.98966 1.21213 1.02084 0.93237 1.04898 1.19121 0.92708 0.85289 0.96772 1.86087 1.37332 1.32642 1.66756 1.23664 0.81854 0.99099 0.94093 1.23100 0.95211 1.00225 1.00346 1.22295 0.96940 0.95852 1.00921 1.22097 0.93313 0.97092 1.03024 1.22184 0.97290 0.92847 1.03069 1.20523 0.92774 0.99162 1.02940 1.21024 1.01863 0.91240 0.97351 0.92883 0.99840 0.99959 0.87186 0.87159 0.73208 0.87068 0.84719 0.90328 0.92123 0.90820 0.90950 0.90330 0.90551 0.89989 0.90379 0.89891 0.82454 0.81617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.62 13.29 21.44 0.28 -59.33 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.25 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.54 -30.58 9.11 25.60 0.23 -30.35 16 8 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 9 C 0.04 2.28 4.26 29.85 0.13 2.40 16 10 C -0.12 -4.52 5.64 29.85 0.17 -4.35 16 11 C 0.51 19.60 7.67 87.66 0.67 20.28 16 12 O -0.57 -27.67 13.47 -3.08 -0.04 -27.71 16 13 N -0.66 -18.33 5.34 -303.39 -1.62 -19.95 16 14 C 0.09 2.67 6.29 38.11 0.24 2.91 16 15 C -0.10 -3.42 8.69 22.38 0.19 -3.22 16 16 C -0.20 -5.39 8.83 22.35 0.20 -5.19 16 17 C 0.11 2.63 6.66 22.50 0.15 2.78 16 18 O -0.31 -7.07 9.86 -93.26 -0.92 -7.99 16 19 C 0.07 1.25 2.68 31.80 0.09 1.34 16 20 C -0.15 -2.70 6.41 32.01 0.21 -2.49 16 21 C -0.12 -1.59 6.82 31.67 0.22 -1.37 16 22 C -0.12 -1.25 6.80 31.32 0.21 -1.03 16 23 C -0.12 -1.54 6.56 31.32 0.21 -1.33 16 24 C -0.14 -2.88 9.98 22.35 0.22 -2.66 16 25 C -0.09 -2.03 9.96 22.38 0.22 -1.81 16 26 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 27 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 28 H -0.02 -1.13 8.10 -2.38 -0.02 -1.15 16 29 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 30 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 31 H 0.43 7.99 8.83 -92.71 -0.82 7.18 16 32 H 0.11 4.29 6.29 -2.91 -0.02 4.28 16 33 H 0.14 3.37 5.47 -2.91 -0.02 3.36 16 34 H 0.08 1.44 6.27 -2.39 -0.01 1.43 16 35 H 0.06 1.23 7.60 -2.39 -0.02 1.22 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.08 1.06 8.07 -2.39 -0.02 1.04 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 44 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -77.41 360.67 3.73 -73.68 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.18 Total: 19.24 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 3.82 Total: -24.12 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -1.34 Total: -79.29 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.96 Total: -35.70 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -77.41 3.73 -73.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292361649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.175 kcal (2) G-P(sol) polarization free energy of solvation -77.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds