Wall clock time and date at job start Tue Mar 31 2020 08:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99908 * 2 1 4 4 H 1.48500 * 109.47032 * 269.99915 * 3 2 1 5 5 H 1.48500 * 109.47227 * 29.99785 * 3 2 1 6 6 H 1.48500 * 109.47036 * 149.99627 * 3 2 1 7 7 C 1.37873 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00396 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99741 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47065 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47290 * 179.97438 * 10 9 7 12 12 O 1.21290 * 119.99815 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00388 * 179.97438 * 11 10 9 14 14 C 1.39915 * 120.00116 * 175.31330 * 13 11 10 15 15 C 1.38932 * 120.04197 * 215.99036 * 14 13 11 16 16 C 1.38125 * 120.04252 * 180.02562 * 15 14 13 17 17 C 1.38217 * 120.12208 * 359.67509 * 16 15 14 18 18 C 1.38762 * 120.08019 * 0.59971 * 17 16 15 19 19 O 1.35906 * 120.01970 * 179.69936 * 18 17 16 20 20 C 1.42903 * 116.99828 * 5.08008 * 19 18 17 21 21 C 1.54882 * 110.48671 * 156.27080 * 20 19 18 22 22 C 1.54883 * 102.74911 * 156.62344 * 21 20 19 23 23 C 1.54267 * 104.19647 * 322.05752 * 22 21 20 24 24 C 1.53871 * 106.59779 * 23.60859 * 23 22 21 25 25 C 1.38625 * 119.96646 * 359.42740 * 18 17 16 26 26 H 0.97000 * 120.00046 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46677 * 60.00019 * 9 7 2 28 28 H 1.08997 * 109.47029 * 299.99951 * 9 7 2 29 29 H 1.09003 * 109.47006 * 59.99653 * 10 9 7 30 30 H 1.09004 * 109.46851 * 300.00289 * 10 9 7 31 31 H 0.97000 * 119.99665 * 355.32325 * 13 11 10 32 32 H 1.08005 * 119.98138 * 0.02562 * 15 14 13 33 33 H 1.08000 * 119.94031 * 179.97438 * 16 15 14 34 34 H 1.07992 * 119.95887 * 180.30079 * 17 16 15 35 35 H 1.09005 * 110.53442 * 33.65917 * 20 19 18 36 36 H 1.09000 * 110.75720 * 274.94119 * 21 20 19 37 37 H 1.09005 * 110.75785 * 38.30661 * 21 20 19 38 38 H 1.08994 * 110.49115 * 80.73573 * 22 21 20 39 39 H 1.09009 * 110.48938 * 203.38180 * 22 21 20 40 40 H 1.09008 * 110.03168 * 264.32870 * 23 22 21 41 41 H 1.08999 * 110.07412 * 142.91937 * 23 22 21 42 42 H 1.08995 * 110.03380 * 240.71537 * 24 23 22 43 43 H 1.08998 * 110.07172 * 119.30804 * 24 23 22 44 44 H 1.07997 * 120.06799 * 180.25717 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1657 -6.1344 0.0008 14 6 1.4696 -7.3440 0.1003 15 6 2.0155 -8.4038 0.8139 16 6 1.3286 -9.5982 0.9118 17 6 0.0942 -9.7401 0.3063 18 6 -0.4531 -8.6868 -0.4124 19 8 -1.6641 -8.8298 -1.0124 20 6 -2.3682 -10.0496 -0.7702 21 6 -3.8887 -9.8500 -0.9867 22 6 -4.3826 -11.2867 -1.2880 23 6 -3.2552 -11.9030 -2.1418 24 6 -1.9744 -11.1164 -1.8126 25 6 0.2334 -7.4868 -0.5134 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6043 -0.8895 31 1 3.1332 -6.1357 -0.0684 32 1 2.9775 -8.2938 1.2923 33 1 1.7546 -10.4211 1.4665 34 1 -0.4427 -10.6735 0.3886 35 1 -2.1707 -10.4111 0.2390 36 1 -4.3597 -9.4609 -0.0839 37 1 -4.0750 -9.1915 -1.8352 38 1 -4.5105 -11.8481 -0.3625 39 1 -5.3158 -11.2593 -1.8507 40 1 -3.4924 -11.8038 -3.2012 41 1 -3.1240 -12.9543 -1.8857 42 1 -1.5900 -10.6356 -2.7121 43 1 -1.2213 -11.7853 -1.3962 44 1 -0.1930 -6.6646 -1.0689 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292653748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:40 Heat of formation + Delta-G solvation = -67.852697 kcal Electronic energy + Delta-G solvation = -23745.015582 eV Core-core repulsion = 20240.691167 eV Total energy + Delta-G solvation = -3504.324415 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.61569 -39.65202 -37.95066 -36.40915 -34.21629 -33.50541 -31.22922 -30.41795 -29.34500 -28.90412 -28.00221 -25.77218 -23.25264 -22.56078 -21.64420 -20.81825 -20.32448 -19.66558 -18.52908 -17.06238 -16.45893 -16.41211 -15.95143 -15.66777 -15.50066 -15.12287 -14.66088 -14.43929 -14.23151 -13.68425 -13.66702 -13.26315 -13.19859 -12.63731 -12.53577 -12.19922 -12.09369 -11.82041 -11.60050 -11.52585 -11.44435 -11.19354 -10.94734 -10.86006 -10.83573 -10.69374 -10.61414 -10.02494 -9.99109 -9.69318 -9.21851 -9.06904 -8.34645 -8.30351 -7.97452 -5.97213 -4.02007 1.32562 1.48198 2.99319 3.09409 3.33039 3.38854 3.41252 3.48916 3.84898 4.18730 4.24799 4.46602 4.53055 4.80001 4.84076 5.06381 5.10667 5.11821 5.14023 5.22321 5.26714 5.36947 5.37812 5.39133 5.52250 5.54880 5.59958 5.69897 5.79366 5.87565 5.96527 6.00543 6.14803 6.15471 6.31608 6.32166 6.47370 6.50320 6.83375 7.00468 7.49543 7.68934 7.72829 7.82578 8.04687 8.35201 8.60571 9.06049 9.61724 11.13704 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021693 B = 0.002551 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.405766 B =10971.954960 C =12038.910782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.128 4.128 11 C 0.508 3.492 12 O -0.509 6.509 13 N -0.686 5.686 14 C 0.194 3.806 15 C -0.189 4.189 16 C -0.065 4.065 17 C -0.233 4.233 18 C 0.148 3.852 19 O -0.303 6.303 20 C 0.078 3.922 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.149 4.149 25 C -0.157 4.157 26 H 0.261 0.739 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.410 0.590 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 -26.557 -1.185 26.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.168 4.168 11 C 0.297 3.703 12 O -0.381 6.381 13 N -0.332 5.332 14 C 0.099 3.901 15 C -0.210 4.210 16 C -0.083 4.083 17 C -0.253 4.253 18 C 0.102 3.898 19 O -0.216 6.216 20 C 0.021 3.979 21 C -0.157 4.157 22 C -0.161 4.161 23 C -0.160 4.160 24 C -0.186 4.186 25 C -0.178 4.178 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.246 0.754 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.056 -26.195 -1.304 26.308 hybrid contribution 1.055 0.688 0.134 1.266 sum -1.001 -25.507 -1.170 25.554 Atomic orbital electron populations 1.69997 1.06064 1.26649 1.50037 1.25028 0.94835 0.99270 0.95259 0.86577 0.79752 0.83459 0.78077 1.20651 1.21213 1.19881 1.21196 0.92941 0.90921 1.51588 0.92533 1.18925 0.93152 0.89298 0.98776 1.21912 1.00832 0.91182 1.02884 1.21881 0.88904 0.85426 0.74059 1.90697 1.14314 1.87091 1.46036 1.43946 1.10737 1.04205 1.74354 1.17498 0.92421 0.85984 0.94207 1.20816 1.02525 0.93980 1.03635 1.20629 0.93632 0.96678 0.97394 1.21151 0.98878 0.99280 1.05944 1.18770 0.85222 0.93457 0.92343 1.86167 1.28942 1.39096 1.67419 1.23374 0.92118 0.83521 0.98864 1.22561 0.92315 0.97657 1.03210 1.22309 0.98462 0.95156 1.00134 1.22062 0.94258 0.99242 1.00398 1.22694 0.98257 0.97568 1.00110 1.20528 0.95989 0.96793 1.04506 0.92902 0.95691 0.95699 0.89793 0.89795 0.75385 0.85715 0.85750 0.85724 0.90213 0.90529 0.89884 0.91292 0.90862 0.91396 0.91582 0.90373 0.91272 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 10 C -0.13 -2.54 5.64 -27.88 -0.16 -2.70 16 11 C 0.51 9.77 7.67 -10.99 -0.08 9.69 16 12 O -0.51 -11.96 13.47 5.55 0.07 -11.88 16 13 N -0.69 -10.10 5.33 -9.88 -0.05 -10.16 16 14 C 0.19 2.93 6.28 -83.72 -0.53 2.40 16 15 C -0.19 -2.28 9.96 -39.37 -0.39 -2.68 16 16 C -0.06 -0.71 10.03 -39.63 -0.40 -1.10 16 17 C -0.23 -2.77 8.87 -39.40 -0.35 -3.12 16 18 C 0.15 2.18 6.66 -39.24 -0.26 1.91 16 19 O -0.30 -4.32 9.85 -19.44 -0.19 -4.52 16 20 C 0.08 0.80 2.69 -25.08 -0.07 0.73 16 21 C -0.12 -1.08 6.62 -24.75 -0.16 -1.24 16 22 C -0.12 -0.82 6.83 -25.08 -0.17 -0.99 16 23 C -0.12 -0.82 6.80 -25.61 -0.17 -1.00 16 24 C -0.15 -1.26 6.28 -25.61 -0.16 -1.42 16 25 C -0.16 -2.65 8.63 -39.25 -0.34 -2.99 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.02 0.73 8.10 -51.93 -0.42 0.30 16 28 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.41 4.44 8.83 -40.82 -0.36 4.08 16 32 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.12 1.18 5.51 -52.49 -0.29 0.90 16 35 H 0.08 0.75 6.27 -51.93 -0.33 0.42 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 40 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 43 H 0.07 0.52 7.70 -51.93 -0.40 0.12 16 44 H 0.15 2.90 6.29 -52.49 -0.33 2.57 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -34.35 360.75 -9.53 -43.87 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.73 Total: 2.62 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -3.77 Total: -15.29 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.68 Total: -36.86 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.12 Total: -16.40 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.35 -9.53 -43.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292653748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.982 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds