Wall clock time and date at job start Tue Mar 31 2020 08:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99908 * 2 1 4 4 H 1.48500 * 109.47032 * 269.99915 * 3 2 1 5 5 H 1.48500 * 109.47227 * 29.99785 * 3 2 1 6 6 H 1.48500 * 109.47036 * 149.99627 * 3 2 1 7 7 C 1.37873 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00396 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99741 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47065 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47290 * 179.97438 * 10 9 7 12 12 O 1.21290 * 119.99815 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00388 * 179.97438 * 11 10 9 14 14 C 1.39915 * 120.00116 * 175.31330 * 13 11 10 15 15 C 1.38932 * 120.04197 * 215.99036 * 14 13 11 16 16 C 1.38125 * 120.04252 * 180.02562 * 15 14 13 17 17 C 1.38217 * 120.12208 * 359.67509 * 16 15 14 18 18 C 1.38762 * 120.08019 * 0.59971 * 17 16 15 19 19 O 1.35906 * 120.01970 * 179.69936 * 18 17 16 20 20 C 1.42903 * 116.99828 * 5.08008 * 19 18 17 21 21 C 1.54882 * 110.48671 * 156.27080 * 20 19 18 22 22 C 1.54883 * 102.74911 * 156.62344 * 21 20 19 23 23 C 1.54267 * 104.19647 * 322.05752 * 22 21 20 24 24 C 1.53871 * 106.59779 * 23.60859 * 23 22 21 25 25 C 1.38625 * 119.96646 * 359.42740 * 18 17 16 26 26 H 0.97000 * 120.00046 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46677 * 60.00019 * 9 7 2 28 28 H 1.08997 * 109.47029 * 299.99951 * 9 7 2 29 29 H 1.09003 * 109.47006 * 59.99653 * 10 9 7 30 30 H 1.09004 * 109.46851 * 300.00289 * 10 9 7 31 31 H 0.97000 * 119.99665 * 355.32325 * 13 11 10 32 32 H 1.08005 * 119.98138 * 0.02562 * 15 14 13 33 33 H 1.08000 * 119.94031 * 179.97438 * 16 15 14 34 34 H 1.07992 * 119.95887 * 180.30079 * 17 16 15 35 35 H 1.09005 * 110.53442 * 33.65917 * 20 19 18 36 36 H 1.09000 * 110.75720 * 274.94119 * 21 20 19 37 37 H 1.09005 * 110.75785 * 38.30661 * 21 20 19 38 38 H 1.08994 * 110.49115 * 80.73573 * 22 21 20 39 39 H 1.09009 * 110.48938 * 203.38180 * 22 21 20 40 40 H 1.09008 * 110.03168 * 264.32870 * 23 22 21 41 41 H 1.08999 * 110.07412 * 142.91937 * 23 22 21 42 42 H 1.08995 * 110.03380 * 240.71537 * 24 23 22 43 43 H 1.08998 * 110.07172 * 119.30804 * 24 23 22 44 44 H 1.07997 * 120.06799 * 180.25717 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1657 -6.1344 0.0008 14 6 1.4696 -7.3440 0.1003 15 6 2.0155 -8.4038 0.8139 16 6 1.3286 -9.5982 0.9118 17 6 0.0942 -9.7401 0.3063 18 6 -0.4531 -8.6868 -0.4124 19 8 -1.6641 -8.8298 -1.0124 20 6 -2.3682 -10.0496 -0.7702 21 6 -3.8887 -9.8500 -0.9867 22 6 -4.3826 -11.2867 -1.2880 23 6 -3.2552 -11.9030 -2.1418 24 6 -1.9744 -11.1164 -1.8126 25 6 0.2334 -7.4868 -0.5134 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6043 -0.8895 31 1 3.1332 -6.1357 -0.0684 32 1 2.9775 -8.2938 1.2923 33 1 1.7546 -10.4211 1.4665 34 1 -0.4427 -10.6735 0.3886 35 1 -2.1707 -10.4111 0.2390 36 1 -4.3597 -9.4609 -0.0839 37 1 -4.0750 -9.1915 -1.8352 38 1 -4.5105 -11.8481 -0.3625 39 1 -5.3158 -11.2593 -1.8507 40 1 -3.4924 -11.8038 -3.2012 41 1 -3.1240 -12.9543 -1.8857 42 1 -1.5900 -10.6356 -2.7121 43 1 -1.2213 -11.7853 -1.3962 44 1 -0.1930 -6.6646 -1.0689 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292653748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:40 Heat of formation + Delta-G solvation = -89.459235 kcal Electronic energy + Delta-G solvation = -23745.952512 eV Core-core repulsion = 20240.691167 eV Total energy + Delta-G solvation = -3505.261345 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.75048 -40.85846 -38.99544 -37.31931 -35.63957 -35.45959 -33.12548 -31.49524 -30.44153 -29.68042 -28.75695 -27.69345 -24.67917 -23.64607 -23.09464 -21.58182 -21.29613 -21.03120 -19.56407 -18.86207 -17.74501 -17.42945 -17.23041 -16.82559 -16.69747 -16.46947 -16.26657 -15.63433 -15.22409 -15.06877 -14.58210 -14.38862 -14.27627 -14.21176 -14.05132 -13.33881 -13.25790 -13.20945 -12.82545 -12.72244 -12.49576 -12.46984 -12.16638 -12.08539 -11.94672 -11.74061 -11.66469 -11.56202 -11.35754 -11.31683 -11.15830 -10.73759 -10.57933 -9.45686 -9.03061 -8.19160 -6.33588 0.23825 0.45881 1.41737 1.44743 1.55642 1.60505 1.95646 2.33336 2.44350 2.80353 3.14062 3.50023 3.58554 3.85454 3.89102 3.93573 4.09222 4.21304 4.27342 4.40920 4.42748 4.43703 4.48518 4.49911 4.51581 4.61242 4.68944 4.76809 4.85807 5.01008 5.04161 5.08289 5.17569 5.22697 5.31459 5.34035 5.38221 5.40304 5.47173 5.49604 5.59745 5.82951 5.90460 6.15122 6.46136 6.52068 6.84915 7.19843 7.36926 8.93682 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021693 B = 0.002551 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.405766 B =10971.954960 C =12038.910782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.253 1.253 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.041 3.959 10 C -0.115 4.115 11 C 0.509 3.491 12 O -0.565 6.565 13 N -0.662 5.662 14 C 0.171 3.829 15 C -0.178 4.178 16 C -0.054 4.054 17 C -0.224 4.224 18 C 0.133 3.867 19 O -0.333 6.333 20 C 0.067 3.933 21 C -0.126 4.126 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.145 4.145 25 C -0.195 4.195 26 H 0.263 0.737 27 H -0.019 1.019 28 H -0.018 1.018 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.431 0.569 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.153 0.847 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.085 0.915 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 -29.113 0.005 29.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.003 3.997 10 C -0.155 4.155 11 C 0.299 3.701 12 O -0.442 6.442 13 N -0.310 5.310 14 C 0.076 3.924 15 C -0.199 4.199 16 C -0.072 4.072 17 C -0.243 4.243 18 C 0.087 3.913 19 O -0.247 6.247 20 C 0.011 3.989 21 C -0.164 4.164 22 C -0.153 4.153 23 C -0.156 4.156 24 C -0.183 4.183 25 C -0.217 4.217 26 H 0.071 0.929 27 H 0.000 1.000 28 H 0.001 0.999 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.271 0.729 32 H 0.177 0.823 33 H 0.187 0.813 34 H 0.171 0.829 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.856 -28.806 -0.120 28.819 hybrid contribution 0.106 1.366 -0.242 1.391 sum 0.962 -27.440 -0.362 27.459 Atomic orbital electron populations 1.70189 1.08407 1.27833 1.51496 1.26176 0.95726 1.04102 0.94641 0.85291 0.78688 0.77567 0.78514 1.19731 1.21282 1.17694 1.21711 0.94115 0.91417 1.50746 0.90258 1.18709 0.93736 0.92542 0.94719 1.21670 0.99305 0.88933 1.05553 1.21713 0.88089 0.86635 0.73666 1.90698 1.16676 1.87905 1.48889 1.43516 1.11588 1.03042 1.72815 1.17722 0.92272 0.86710 0.95658 1.21186 1.03590 0.92991 1.02099 1.21189 0.92650 0.97290 0.96076 1.21498 0.99350 0.99148 1.04300 1.18921 0.85517 0.93674 0.93197 1.86142 1.29293 1.41428 1.67867 1.23722 0.92284 0.82745 1.00108 1.22632 0.92009 0.99265 1.02470 1.22307 0.98721 0.93236 1.01010 1.22076 0.93124 0.99996 1.00444 1.22672 0.99604 0.97210 0.98767 1.20420 0.97840 0.96888 1.06514 0.92874 1.00046 0.99947 0.86895 0.87037 0.72852 0.82325 0.81252 0.82938 0.88968 0.90671 0.91685 0.89735 0.89982 0.91437 0.89552 0.92307 0.89686 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.49 13.29 21.45 0.28 -60.20 16 2 C -0.01 -0.54 5.46 84.65 0.46 -0.08 16 3 Si 0.98 44.60 29.54 68.60 2.03 46.63 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.25 -10.66 7.11 99.48 0.71 -9.96 16 7 C -0.54 -30.96 9.11 25.60 0.23 -30.73 16 8 H 0.08 4.07 7.74 -2.91 -0.02 4.05 16 9 C 0.04 2.29 4.26 29.85 0.13 2.41 16 10 C -0.12 -4.59 5.64 29.85 0.17 -4.43 16 11 C 0.51 20.41 7.67 87.66 0.67 21.08 16 12 O -0.56 -28.96 13.47 -3.06 -0.04 -29.00 16 13 N -0.66 -19.29 5.33 -303.56 -1.62 -20.91 16 14 C 0.17 5.14 6.28 38.14 0.24 5.37 16 15 C -0.18 -3.76 9.96 22.41 0.22 -3.53 16 16 C -0.05 -0.96 10.03 22.24 0.22 -0.73 16 17 C -0.22 -4.82 8.87 22.39 0.20 -4.62 16 18 C 0.13 4.03 6.66 22.49 0.15 4.18 16 19 O -0.33 -10.19 9.85 -92.49 -0.91 -11.10 16 20 C 0.07 1.37 2.69 31.67 0.09 1.46 16 21 C -0.13 -2.33 6.62 31.88 0.21 -2.12 16 22 C -0.12 -1.37 6.83 31.67 0.22 -1.15 16 23 C -0.12 -1.39 6.80 31.32 0.21 -1.18 16 24 C -0.14 -2.32 6.28 31.32 0.20 -2.12 16 25 C -0.20 -7.08 8.63 22.49 0.19 -6.89 16 26 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 27 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 28 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 29 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 30 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 31 H 0.43 8.42 8.83 -92.71 -0.82 7.60 16 32 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.15 2.36 5.51 -2.91 -0.02 2.35 16 35 H 0.09 1.60 6.27 -2.38 -0.01 1.59 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 1.17 8.07 -2.39 -0.02 1.15 16 43 H 0.08 1.07 7.70 -2.39 -0.02 1.05 16 44 H 0.10 4.57 6.29 -2.91 -0.02 4.55 16 Total: -1.00 -82.77 360.75 3.74 -79.03 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.18 Total: 18.62 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 3.81 Total: -23.07 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -1.33 Total: -81.12 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.95 Total: -40.10 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -82.77 3.74 -79.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292653748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.429 kcal (2) G-P(sol) polarization free energy of solvation -82.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds