Wall clock time and date at job start Tue Mar 31 2020 08:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30647 * 1 3 3 Si 1.86798 * 120.00327 * 2 1 4 4 H 1.48493 * 109.46992 * 90.00097 * 3 2 1 5 5 H 1.48501 * 109.46772 * 209.99962 * 3 2 1 6 6 H 1.48497 * 109.47141 * 329.99822 * 3 2 1 7 7 C 1.40230 * 119.99183 * 180.27598 * 2 1 3 8 8 H 1.08000 * 119.99273 * 169.38063 * 7 2 1 9 9 C 1.41101 * 120.00281 * 349.37837 * 7 2 1 10 10 C 1.40884 * 120.10593 * 330.43986 * 9 7 2 11 11 C 1.36317 * 119.89436 * 179.78919 * 10 9 7 12 12 C 1.40014 * 120.10587 * 0.49025 * 11 10 9 13 13 C 1.47642 * 119.89344 * 179.76461 * 12 11 10 14 14 O 1.21586 * 120.00146 * 325.75756 * 13 12 11 15 15 N 1.34779 * 119.99783 * 145.76227 * 13 12 11 16 16 C 1.47607 * 118.64434 * 354.74479 * 15 13 12 17 17 C 1.53598 * 112.33910 * 222.04112 * 16 15 13 18 18 C 1.50881 * 109.95566 * 40.83704 * 17 16 15 19 19 C 1.52572 * 109.35658 * 268.02221 * 18 17 16 20 20 H 1.09000 * 108.51073 * 323.75744 * 19 18 17 21 21 C 1.53002 * 108.51289 * 206.26669 * 19 18 17 22 22 O 1.42900 * 109.46910 * 170.23675 * 21 19 18 23 23 C 1.47089 * 114.32437 * 85.01102 * 19 18 17 24 24 C 1.44574 * 118.64539 * 175.02031 * 15 13 12 25 25 C 1.40016 * 120.20793 * 359.73927 * 12 11 10 26 26 C 1.36312 * 120.10494 * 0.02562 * 25 12 11 27 27 H 0.97007 * 119.99709 * 359.72677 * 1 2 3 28 28 H 1.08002 * 120.05236 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.95077 * 180.25456 * 11 10 9 30 30 H 1.09005 * 108.94422 * 342.84192 * 16 15 13 31 31 H 1.08993 * 108.94528 * 101.46780 * 16 15 13 32 32 H 1.09001 * 109.51209 * 280.63773 * 17 16 15 33 33 H 1.09003 * 109.26261 * 160.87186 * 17 16 15 34 34 H 1.08997 * 109.49074 * 148.05617 * 18 17 16 35 35 H 1.09000 * 109.49162 * 27.98336 * 18 17 16 36 36 H 1.09002 * 109.46726 * 290.23394 * 21 19 18 37 37 H 1.08992 * 109.47231 * 50.23193 * 21 19 18 38 38 H 0.96704 * 113.99667 * 179.97438 * 22 21 19 39 39 H 1.09006 * 109.32928 * 176.93624 * 23 19 18 40 40 H 1.09001 * 109.32939 * 57.46187 * 23 19 18 41 41 H 1.09003 * 109.45404 * 209.29155 * 24 15 13 42 42 H 1.09002 * 109.44498 * 329.23292 * 24 15 13 43 43 H 1.07997 * 119.94370 * 179.97438 * 25 12 11 44 44 H 1.08004 * 120.05388 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4881 2.0463 1.4000 5 1 3.5381 1.4399 -0.7000 6 1 1.4381 2.6526 -0.7001 7 6 2.0074 -1.2145 -0.0059 8 1 3.0736 -1.2217 -0.1783 9 6 1.3200 -2.4270 0.2135 10 6 0.1614 -2.4475 1.0149 11 6 -0.5018 -3.6206 1.2205 12 6 -0.0276 -4.8057 0.6451 13 6 -0.7467 -6.0744 0.8751 14 8 -1.2951 -6.2779 1.9410 15 7 -0.7952 -7.0072 -0.0965 16 6 -0.2216 -6.6835 -1.4175 17 6 -1.1048 -7.1753 -2.5739 18 6 -2.5581 -6.9266 -2.2537 19 6 -3.1442 -8.1598 -1.5729 20 1 -2.6973 -9.0475 -2.0205 21 6 -4.6503 -8.1927 -1.8404 22 8 -5.1830 -9.4472 -1.4108 23 6 -2.9268 -8.2100 -0.1190 24 6 -1.4123 -8.2815 0.1962 25 6 1.1260 -4.7912 -0.1482 26 6 1.7933 -3.6221 -0.3633 27 1 -0.4850 0.8401 0.0040 28 1 -0.2028 -1.5346 1.4626 29 1 -1.3924 -3.6366 1.8313 30 1 -0.1041 -5.6027 -1.4970 31 1 0.7591 -7.1516 -1.5018 32 1 -0.9455 -8.2430 -2.7250 33 1 -0.8381 -6.6378 -3.4839 34 1 -3.1043 -6.7259 -3.1753 35 1 -2.6419 -6.0686 -1.5867 36 1 -5.1345 -7.3852 -1.2913 37 1 -4.8326 -8.0668 -2.9075 38 1 -6.1356 -9.5383 -1.5499 39 1 -3.4224 -9.0907 0.2897 40 1 -3.3490 -7.3161 0.3400 41 1 -0.9506 -9.0573 -0.4147 42 1 -1.2722 -8.5187 1.2508 43 1 1.4883 -5.7079 -0.5896 44 1 2.6833 -3.6120 -0.9750 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294431508.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:23 Heat of formation + Delta-G solvation = -71.712774 kcal Electronic energy + Delta-G solvation = -25137.735057 eV Core-core repulsion = 21633.243257 eV Total energy + Delta-G solvation = -3504.491800 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.13916 -38.22602 -37.10219 -36.22064 -34.06941 -33.53134 -32.40074 -30.16032 -29.63598 -27.92997 -25.81466 -25.77043 -23.56349 -22.19012 -21.01143 -20.74445 -20.14234 -18.54443 -17.51680 -17.43318 -16.51838 -16.05537 -15.39527 -15.35403 -14.86136 -14.45052 -14.27246 -14.00866 -13.79301 -13.34752 -13.16892 -12.91688 -12.76103 -12.34179 -12.23797 -12.19748 -11.83538 -11.70878 -11.36847 -11.24678 -11.12586 -10.97785 -10.83841 -10.68362 -10.57221 -10.43712 -10.33083 -10.06908 -9.94869 -9.49299 -9.37636 -8.91451 -8.16680 -7.66621 -7.44187 -6.92248 -4.58201 2.30593 2.94560 2.97821 3.00663 3.02155 3.54699 3.77834 3.83076 4.06736 4.55170 4.70477 4.77661 4.97688 5.09361 5.18393 5.27871 5.32235 5.51509 5.54260 5.66852 5.70135 5.70961 5.84451 5.89809 5.99594 6.03199 6.08592 6.19160 6.26653 6.32135 6.33365 6.36179 6.50459 6.82329 6.87217 7.05234 7.09560 7.20997 7.46142 7.47065 7.60778 7.78856 7.89059 8.04999 8.14252 8.46414 8.67874 8.77673 9.02168 9.99886 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024428 B = 0.003338 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.941086 B = 8386.882089 C = 8537.392168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.261 1.261 6 H -0.276 1.276 7 C -0.450 4.450 8 H 0.082 0.918 9 C 0.128 3.872 10 C -0.172 4.172 11 C -0.044 4.044 12 C -0.273 4.273 13 C 0.570 3.430 14 O -0.565 6.565 15 N -0.612 5.612 16 C 0.101 3.899 17 C -0.130 4.130 18 C -0.111 4.111 19 C -0.079 4.079 20 H 0.070 0.930 21 C 0.076 3.924 22 O -0.574 6.574 23 C -0.127 4.127 24 C 0.123 3.877 25 C -0.061 4.061 26 C -0.232 4.232 27 H 0.284 0.716 28 H 0.122 0.878 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.376 0.624 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.100 0.900 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.175 -10.491 -6.807 13.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.147 4.147 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.184 1.184 6 H -0.201 1.201 7 C -0.479 4.479 8 H 0.100 0.900 9 C 0.125 3.875 10 C -0.191 4.191 11 C -0.063 4.063 12 C -0.277 4.277 13 C 0.364 3.636 14 O -0.445 6.445 15 N -0.345 5.345 16 C -0.022 4.022 17 C -0.169 4.169 18 C -0.149 4.149 19 C -0.098 4.098 20 H 0.089 0.911 21 C -0.002 4.002 22 O -0.379 6.379 23 C -0.165 4.165 24 C -0.001 4.001 25 C -0.080 4.080 26 C -0.251 4.251 27 H 0.096 0.904 28 H 0.139 0.861 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.222 0.778 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.118 0.882 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.031 -10.559 -6.122 13.202 hybrid contribution -0.332 0.882 -0.376 1.014 sum -5.363 -9.677 -6.498 12.831 Atomic orbital electron populations 1.69717 1.07697 1.29718 1.33628 1.26044 0.94889 1.01648 0.92114 0.86193 0.80378 0.80033 0.79504 1.19096 1.18440 1.20093 1.19774 0.96176 0.90456 1.41454 0.89977 1.17778 0.90865 0.92104 0.86759 1.21042 0.99137 0.96672 1.02247 1.20434 0.97745 0.91897 0.96248 1.18932 1.02505 0.92462 1.13813 1.18813 0.78563 0.83548 0.82655 1.90645 1.48204 1.79441 1.26258 1.47591 1.60175 1.14723 1.12040 1.22386 0.94917 1.03322 0.81526 1.21718 0.95263 1.01449 0.98434 1.21071 0.95637 0.97974 1.00217 1.20112 0.93478 0.98909 0.97292 0.91128 1.22455 0.95039 0.85245 0.97454 1.86481 1.27368 1.37126 1.86926 1.21190 0.97173 1.02988 0.95168 1.21245 0.92048 0.85329 1.01490 1.20656 0.94453 0.97006 0.95867 1.20750 1.03470 0.93472 1.07414 0.90439 0.86071 0.88715 0.87511 0.92515 0.91944 0.90558 0.91961 0.90884 0.93686 0.93901 0.77811 0.90693 0.91650 0.91604 0.90388 0.88219 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.17 10.87 55.56 0.60 -18.57 16 2 C 0.07 1.72 5.25 -17.31 -0.09 1.63 16 3 Si 0.91 17.61 29.57 -169.99 -5.03 12.58 16 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 6 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.45 -11.19 9.05 -37.75 -0.34 -11.54 16 8 H 0.08 1.95 7.87 -52.49 -0.41 1.53 16 9 C 0.13 3.23 5.54 -106.81 -0.59 2.64 16 10 C -0.17 -4.35 8.59 -39.27 -0.34 -4.69 16 11 C -0.04 -1.06 9.53 -39.61 -0.38 -1.44 16 12 C -0.27 -6.14 5.21 -104.73 -0.55 -6.69 16 13 C 0.57 12.09 7.31 -12.42 -0.09 12.00 16 14 O -0.57 -13.57 16.28 5.29 0.09 -13.49 16 15 N -0.61 -10.28 2.25 -173.94 -0.39 -10.67 16 16 C 0.10 1.45 4.38 -3.12 -0.01 1.43 16 17 C -0.13 -1.50 5.70 -27.48 -0.16 -1.66 16 18 C -0.11 -1.35 4.93 -28.01 -0.14 -1.49 16 19 C -0.08 -0.95 1.88 -93.68 -0.18 -1.13 16 20 H 0.07 0.83 7.36 -51.93 -0.38 0.45 16 21 C 0.08 0.80 6.28 37.16 0.23 1.03 16 22 O -0.57 -6.05 12.96 -35.23 -0.46 -6.51 16 23 C -0.13 -1.76 4.88 -28.59 -0.14 -1.90 16 24 C 0.12 1.81 5.34 -4.09 -0.02 1.79 16 25 C -0.06 -1.28 7.28 -39.61 -0.29 -1.57 16 26 C -0.23 -5.26 9.73 -39.27 -0.38 -5.65 16 27 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 28 H 0.12 3.17 6.26 -52.49 -0.33 2.84 16 29 H 0.09 2.25 7.98 -52.49 -0.42 1.83 16 30 H 0.11 1.77 4.87 -51.93 -0.25 1.52 16 31 H 0.06 0.74 7.35 -51.93 -0.38 0.36 16 32 H 0.06 0.65 7.32 -51.93 -0.38 0.27 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.65 7.64 -51.93 -0.40 0.26 16 35 H 0.07 1.09 7.48 -51.93 -0.39 0.70 16 36 H 0.04 0.49 8.13 -51.93 -0.42 0.06 16 37 H 0.04 0.39 7.82 -51.93 -0.41 -0.02 16 38 H 0.38 2.23 9.12 45.56 0.42 2.64 16 39 H 0.07 1.02 7.51 -51.93 -0.39 0.63 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 42 H 0.08 1.27 7.38 -51.93 -0.38 0.88 16 43 H 0.10 1.79 5.47 -52.49 -0.29 1.50 16 44 H 0.10 2.04 8.06 -52.48 -0.42 1.61 16 LS Contribution 344.42 15.07 5.19 5.19 Total: -1.00 -29.17 344.42 -9.09 -38.27 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.64 Total: 10.43 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -3.46 Total: -17.23 kcal Atomic # 7 Polarization: -29.45 SS G_CDS: 0.21 Total: -29.24 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.37 Total: -20.00 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.17 -9.09 -38.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294431508.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.448 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds