Wall clock time and date at job start Tue Mar 31 2020 08:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86799 * 120.00545 * 2 1 4 4 H 1.48495 * 109.47286 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46882 * 299.99865 * 3 2 1 6 6 H 1.48504 * 109.46863 * 59.99678 * 3 2 1 7 7 C 1.40231 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00274 * 196.99290 * 7 2 1 9 9 C 1.41116 * 119.99597 * 16.99188 * 7 2 1 10 10 C 1.40886 * 120.10134 * 205.21207 * 9 7 2 11 11 C 1.36316 * 119.88885 * 180.02562 * 10 9 7 12 12 C 1.40013 * 120.11143 * 359.97438 * 11 10 9 13 13 C 1.47636 * 119.89715 * 180.02562 * 12 11 10 14 14 O 1.21586 * 120.00059 * 225.90389 * 13 12 11 15 15 N 1.34775 * 120.00485 * 45.89971 * 13 12 11 16 16 C 1.47611 * 118.63948 * 355.71202 * 15 13 12 17 17 C 1.53942 * 112.14522 * 137.86063 * 16 15 13 18 18 C 1.50884 * 110.09589 * 319.44176 * 17 16 15 19 19 C 1.52563 * 109.34880 * 91.88392 * 18 17 16 20 20 H 1.09005 * 108.51363 * 36.22859 * 19 18 17 21 21 C 1.53000 * 108.51255 * 153.87807 * 19 18 17 22 22 O 1.42897 * 109.47007 * 185.00208 * 21 19 18 23 23 C 1.47037 * 114.31875 * 274.95475 * 19 18 17 24 24 C 1.44572 * 118.64773 * 175.69323 * 15 13 12 25 25 C 1.40012 * 120.20416 * 0.27515 * 12 11 10 26 26 C 1.36320 * 120.10781 * 359.48366 * 25 12 11 27 27 H 0.97008 * 119.99533 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.05592 * 0.05407 * 10 9 7 29 29 H 1.08008 * 119.94365 * 180.02562 * 11 10 9 30 30 H 1.08996 * 108.95126 * 258.55113 * 16 15 13 31 31 H 1.09007 * 108.94501 * 17.17843 * 16 15 13 32 32 H 1.09001 * 109.36231 * 79.63084 * 17 16 15 33 33 H 1.09000 * 109.37273 * 199.24874 * 17 16 15 34 34 H 1.09000 * 109.49108 * 211.84756 * 18 17 16 35 35 H 1.09006 * 109.48997 * 331.92415 * 18 17 16 36 36 H 1.09003 * 109.46992 * 305.00067 * 21 19 18 37 37 H 1.08995 * 109.46934 * 64.99824 * 21 19 18 38 38 H 0.96705 * 114.00139 * 180.02562 * 22 21 19 39 39 H 1.09004 * 109.34447 * 302.56924 * 23 19 18 40 40 H 1.08995 * 109.30782 * 183.09156 * 23 19 18 41 41 H 1.09005 * 109.44788 * 30.75343 * 24 15 13 42 42 H 1.08997 * 109.45211 * 150.67579 * 24 15 13 43 43 H 1.07998 * 119.94301 * 179.72741 * 25 12 11 44 44 H 1.08004 * 120.05133 * 180.25594 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 3.7005 1.3462 0.0006 5 1 1.8819 2.3963 -1.2125 6 1 1.8818 2.3964 1.2125 7 6 2.0075 -1.2145 0.0005 8 1 3.0521 -1.2348 0.2739 9 6 1.3480 -2.4100 -0.3561 10 6 1.8205 -3.6477 0.1233 11 6 1.1804 -4.7999 -0.2244 12 6 0.0549 -4.7548 -1.0559 13 6 -0.6350 -6.0055 -1.4290 14 8 -0.9557 -6.2013 -2.5854 15 7 -0.9094 -6.9304 -0.4879 16 6 -0.4226 -6.7063 0.8875 17 6 -1.4795 -7.0747 1.9444 18 6 -2.8451 -6.6186 1.4930 19 6 -3.5297 -7.7497 0.7318 20 1 -3.2579 -8.6960 1.1996 21 6 -5.0442 -7.5682 0.8507 22 8 -5.7062 -8.6799 0.2441 23 6 -3.1815 -7.8169 -0.6952 24 6 -1.6687 -8.1009 -0.8669 25 6 -0.4152 -3.5276 -1.5390 26 6 0.2153 -2.3696 -1.1928 27 1 -0.4850 0.8401 -0.0004 28 1 2.6881 -3.6835 0.7655 29 1 1.5416 -5.7492 0.1430 30 1 0.4680 -7.3130 1.0511 31 1 -0.1586 -5.6549 1.0026 32 1 -1.4878 -8.1555 2.0857 33 1 -1.2306 -6.5906 2.8887 34 1 -3.4448 -6.3504 2.3628 35 1 -2.7416 -5.7516 0.8406 36 1 -5.3217 -7.5103 1.9032 37 1 -5.3407 -6.6490 0.3457 38 1 -6.6713 -8.6316 0.2821 39 1 -3.4267 -6.8677 -1.1718 40 1 -3.7543 -8.6141 -1.1688 41 1 -1.4615 -8.3462 -1.9086 42 1 -1.3827 -8.9401 -0.2329 43 1 -1.2811 -3.4980 -2.1837 44 1 -0.1506 -1.4231 -1.5626 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294431514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:26 Heat of formation + Delta-G solvation = -74.907415 kcal Electronic energy + Delta-G solvation = -25200.574926 eV Core-core repulsion = 21695.944595 eV Total energy + Delta-G solvation = -3504.630330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.10579 -38.22113 -37.11018 -36.20115 -34.04294 -33.53213 -32.36346 -30.17917 -29.62381 -27.93293 -25.81622 -25.73956 -23.56205 -22.15129 -21.01855 -20.75022 -20.12056 -18.49887 -17.53143 -17.41602 -16.57146 -16.06583 -15.40916 -15.31262 -14.84882 -14.51937 -14.22531 -13.98797 -13.78000 -13.39329 -13.15133 -12.90819 -12.72196 -12.35262 -12.22249 -12.19121 -11.82649 -11.76549 -11.36762 -11.24384 -11.09532 -10.97185 -10.81358 -10.67281 -10.58495 -10.43052 -10.32007 -10.05504 -10.00617 -9.53698 -9.31512 -8.92236 -8.15342 -7.66951 -7.48153 -6.97364 -4.56071 2.36634 2.93705 2.97444 3.01147 3.03098 3.53251 3.75175 3.79278 4.08607 4.49529 4.71228 4.78765 5.00556 5.10248 5.20199 5.29780 5.33453 5.53157 5.55886 5.68542 5.70244 5.72951 5.85654 5.91049 6.01714 6.04598 6.10740 6.20844 6.25712 6.33623 6.35516 6.38892 6.51470 6.81748 6.85964 7.06321 7.10978 7.20201 7.45965 7.47497 7.61683 7.80610 7.88710 8.04028 8.12654 8.45515 8.67737 8.78104 9.00034 9.95012 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.003507 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.823199 B = 7982.900138 C = 8275.260899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.449 4.449 8 H 0.083 0.917 9 C 0.126 3.874 10 C -0.233 4.233 11 C -0.057 4.057 12 C -0.274 4.274 13 C 0.572 3.428 14 O -0.564 6.564 15 N -0.610 5.610 16 C 0.098 3.902 17 C -0.129 4.129 18 C -0.111 4.111 19 C -0.079 4.079 20 H 0.070 0.930 21 C 0.076 3.924 22 O -0.574 6.574 23 C -0.126 4.126 24 C 0.120 3.880 25 C -0.046 4.046 26 C -0.175 4.175 27 H 0.285 0.715 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.376 0.624 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.530 -9.727 5.682 13.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.477 4.477 8 H 0.101 0.899 9 C 0.123 3.877 10 C -0.253 4.253 11 C -0.076 4.076 12 C -0.278 4.278 13 C 0.366 3.634 14 O -0.443 6.443 15 N -0.343 5.343 16 C -0.024 4.024 17 C -0.167 4.167 18 C -0.149 4.149 19 C -0.098 4.098 20 H 0.088 0.912 21 C -0.002 4.002 22 O -0.379 6.379 23 C -0.165 4.165 24 C -0.004 4.004 25 C -0.065 4.065 26 C -0.195 4.195 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.222 0.778 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.283 -9.882 4.998 12.732 hybrid contribution -0.356 0.952 0.328 1.068 sum -6.639 -8.930 5.326 12.337 Atomic orbital electron populations 1.69748 1.07848 1.29766 1.32621 1.26056 0.94782 1.01745 0.91966 0.86208 0.81071 0.80452 0.78792 1.18158 1.19454 1.19767 1.19807 0.98024 0.91103 1.38727 0.89886 1.17742 0.90526 0.92117 0.87335 1.20682 1.04191 0.92791 1.07617 1.20433 0.94641 0.96902 0.95598 1.18863 1.03833 0.91849 1.13259 1.18847 0.77230 0.83120 0.84192 1.90648 1.55618 1.78693 1.19387 1.47634 1.55494 1.21698 1.09522 1.22372 0.95233 1.04273 0.80520 1.21733 0.95138 1.01126 0.98676 1.21061 0.95694 0.98450 0.99708 1.20108 0.92737 0.99524 0.97384 0.91199 1.22438 0.93478 0.88425 0.95852 1.86478 1.23261 1.46000 1.82137 1.21176 0.96640 1.02954 0.95687 1.21267 0.90294 0.87542 1.01303 1.20346 0.97813 0.91669 0.96659 1.20989 0.99767 0.96832 1.01892 0.90422 0.88524 0.88729 0.92641 0.87320 0.92065 0.90603 0.91953 0.90749 0.93911 0.93663 0.77816 0.91836 0.90509 0.90186 0.91612 0.88999 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.83 10.94 55.56 0.61 -18.22 16 2 C 0.08 1.76 5.15 -17.31 -0.09 1.67 16 3 Si 0.91 17.47 29.59 -169.99 -5.03 12.44 16 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 6 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.45 -11.14 9.05 -37.74 -0.34 -11.48 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.13 3.17 5.57 -106.80 -0.60 2.58 16 10 C -0.23 -5.33 9.73 -39.27 -0.38 -5.71 16 11 C -0.06 -1.20 7.23 -39.61 -0.29 -1.49 16 12 C -0.27 -6.17 5.04 -104.73 -0.53 -6.69 16 13 C 0.57 12.19 7.20 -12.43 -0.09 12.10 16 14 O -0.56 -13.62 16.39 5.29 0.09 -13.53 16 15 N -0.61 -10.33 2.24 -173.72 -0.39 -10.72 16 16 C 0.10 1.43 4.64 -2.94 -0.01 1.42 16 17 C -0.13 -1.51 5.71 -27.30 -0.16 -1.67 16 18 C -0.11 -1.38 4.93 -28.02 -0.14 -1.52 16 19 C -0.08 -0.95 1.92 -93.70 -0.18 -1.13 16 20 H 0.07 0.82 7.36 -51.93 -0.38 0.44 16 21 C 0.08 0.81 6.26 37.16 0.23 1.04 16 22 O -0.57 -6.11 12.75 -35.23 -0.45 -6.56 16 23 C -0.13 -1.77 4.86 -28.60 -0.14 -1.91 16 24 C 0.12 1.78 5.42 -4.08 -0.02 1.76 16 25 C -0.05 -1.10 9.62 -39.61 -0.38 -1.48 16 26 C -0.18 -4.44 8.63 -39.27 -0.34 -4.78 16 27 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 28 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 29 H 0.09 1.73 6.35 -52.48 -0.33 1.40 16 30 H 0.06 0.73 7.81 -51.93 -0.41 0.32 16 31 H 0.11 1.83 4.63 -51.93 -0.24 1.59 16 32 H 0.06 0.64 7.32 -51.93 -0.38 0.26 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.67 7.73 -51.93 -0.40 0.27 16 35 H 0.07 1.14 7.48 -51.93 -0.39 0.75 16 36 H 0.04 0.39 7.95 -51.93 -0.41 -0.02 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.38 2.28 9.12 45.56 0.42 2.69 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.06 7.35 -51.93 -0.38 0.67 16 41 H 0.08 1.31 7.24 -51.93 -0.38 0.94 16 42 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 43 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 44 H 0.12 3.12 6.17 -52.48 -0.32 2.80 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -29.13 345.51 -9.11 -38.24 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.69 Total: 10.43 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -3.45 Total: -17.29 kcal Atomic # 7 Polarization: -29.16 SS G_CDS: 0.22 Total: -28.94 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.36 Total: -20.09 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.13 -9.11 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294431514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.667 kcal (2) G-P(sol) polarization free energy of solvation -29.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds