Wall clock time and date at job start Tue Mar 31 2020 08:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86799 * 120.00545 * 2 1 4 4 H 1.48495 * 109.47286 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46882 * 299.99865 * 3 2 1 6 6 H 1.48504 * 109.46863 * 59.99678 * 3 2 1 7 7 C 1.40231 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00274 * 196.99290 * 7 2 1 9 9 C 1.41116 * 119.99597 * 16.99188 * 7 2 1 10 10 C 1.40886 * 120.10134 * 205.21207 * 9 7 2 11 11 C 1.36316 * 119.88885 * 180.02562 * 10 9 7 12 12 C 1.40013 * 120.11143 * 359.97438 * 11 10 9 13 13 C 1.47636 * 119.89715 * 180.02562 * 12 11 10 14 14 O 1.21586 * 120.00059 * 225.90389 * 13 12 11 15 15 N 1.34775 * 120.00485 * 45.89971 * 13 12 11 16 16 C 1.47611 * 118.63948 * 355.71202 * 15 13 12 17 17 C 1.53942 * 112.14522 * 137.86063 * 16 15 13 18 18 C 1.50884 * 110.09589 * 319.44176 * 17 16 15 19 19 C 1.52563 * 109.34880 * 91.88392 * 18 17 16 20 20 H 1.09005 * 108.51363 * 36.22859 * 19 18 17 21 21 C 1.53000 * 108.51255 * 153.87807 * 19 18 17 22 22 O 1.42897 * 109.47007 * 185.00208 * 21 19 18 23 23 C 1.47037 * 114.31875 * 274.95475 * 19 18 17 24 24 C 1.44572 * 118.64773 * 175.69323 * 15 13 12 25 25 C 1.40012 * 120.20416 * 0.27515 * 12 11 10 26 26 C 1.36320 * 120.10781 * 359.48366 * 25 12 11 27 27 H 0.97008 * 119.99533 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.05592 * 0.05407 * 10 9 7 29 29 H 1.08008 * 119.94365 * 180.02562 * 11 10 9 30 30 H 1.08996 * 108.95126 * 258.55113 * 16 15 13 31 31 H 1.09007 * 108.94501 * 17.17843 * 16 15 13 32 32 H 1.09001 * 109.36231 * 79.63084 * 17 16 15 33 33 H 1.09000 * 109.37273 * 199.24874 * 17 16 15 34 34 H 1.09000 * 109.49108 * 211.84756 * 18 17 16 35 35 H 1.09006 * 109.48997 * 331.92415 * 18 17 16 36 36 H 1.09003 * 109.46992 * 305.00067 * 21 19 18 37 37 H 1.08995 * 109.46934 * 64.99824 * 21 19 18 38 38 H 0.96705 * 114.00139 * 180.02562 * 22 21 19 39 39 H 1.09004 * 109.34447 * 302.56924 * 23 19 18 40 40 H 1.08995 * 109.30782 * 183.09156 * 23 19 18 41 41 H 1.09005 * 109.44788 * 30.75343 * 24 15 13 42 42 H 1.08997 * 109.45211 * 150.67579 * 24 15 13 43 43 H 1.07998 * 119.94301 * 179.72741 * 25 12 11 44 44 H 1.08004 * 120.05133 * 180.25594 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 3.7005 1.3462 0.0006 5 1 1.8819 2.3963 -1.2125 6 1 1.8818 2.3964 1.2125 7 6 2.0075 -1.2145 0.0005 8 1 3.0521 -1.2348 0.2739 9 6 1.3480 -2.4100 -0.3561 10 6 1.8205 -3.6477 0.1233 11 6 1.1804 -4.7999 -0.2244 12 6 0.0549 -4.7548 -1.0559 13 6 -0.6350 -6.0055 -1.4290 14 8 -0.9557 -6.2013 -2.5854 15 7 -0.9094 -6.9304 -0.4879 16 6 -0.4226 -6.7063 0.8875 17 6 -1.4795 -7.0747 1.9444 18 6 -2.8451 -6.6186 1.4930 19 6 -3.5297 -7.7497 0.7318 20 1 -3.2579 -8.6960 1.1996 21 6 -5.0442 -7.5682 0.8507 22 8 -5.7062 -8.6799 0.2441 23 6 -3.1815 -7.8169 -0.6952 24 6 -1.6687 -8.1009 -0.8669 25 6 -0.4152 -3.5276 -1.5390 26 6 0.2153 -2.3696 -1.1928 27 1 -0.4850 0.8401 -0.0004 28 1 2.6881 -3.6835 0.7655 29 1 1.5416 -5.7492 0.1430 30 1 0.4680 -7.3130 1.0511 31 1 -0.1586 -5.6549 1.0026 32 1 -1.4878 -8.1555 2.0857 33 1 -1.2306 -6.5906 2.8887 34 1 -3.4448 -6.3504 2.3628 35 1 -2.7416 -5.7516 0.8406 36 1 -5.3217 -7.5103 1.9032 37 1 -5.3407 -6.6490 0.3457 38 1 -6.6713 -8.6316 0.2821 39 1 -3.4267 -6.8677 -1.1718 40 1 -3.7543 -8.6141 -1.1688 41 1 -1.4615 -8.3462 -1.9086 42 1 -1.3827 -8.9401 -0.2329 43 1 -1.2811 -3.4980 -2.1837 44 1 -0.1506 -1.4231 -1.5626 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294431514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:25 Heat of formation + Delta-G solvation = -92.231786 kcal Electronic energy + Delta-G solvation = -25201.326167 eV Core-core repulsion = 21695.944595 eV Total energy + Delta-G solvation = -3505.381571 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52957 -39.56376 -38.73584 -37.32040 -35.74592 -34.84703 -33.51728 -31.95829 -31.41853 -29.20561 -27.48596 -26.87258 -24.82661 -23.58741 -22.78739 -22.24398 -21.14027 -20.00088 -19.33786 -18.25163 -18.10587 -17.39355 -17.15371 -16.54104 -16.05206 -15.86678 -15.68712 -15.37043 -15.07398 -14.70280 -14.58103 -14.43335 -13.98804 -13.88793 -13.77936 -13.53796 -13.33061 -13.27253 -12.81921 -12.71222 -12.62557 -12.31156 -12.24267 -11.90766 -11.74321 -11.66965 -11.51546 -11.40582 -11.27913 -11.08380 -10.87176 -10.62786 -9.62372 -9.46151 -9.31299 -8.74561 -6.44206 0.58039 1.13485 1.38943 1.43288 1.55192 1.94370 2.16960 2.24905 2.71735 3.31410 3.66630 3.67665 3.76716 3.93444 4.09106 4.14149 4.17620 4.33200 4.37423 4.45424 4.46542 4.53292 4.65671 4.70859 4.80213 4.83556 4.93642 4.97057 5.04351 5.05164 5.11237 5.21445 5.27320 5.28586 5.29191 5.33377 5.46147 5.60883 5.78695 5.84392 6.01146 6.02957 6.22819 6.49157 6.58793 6.81492 6.89484 6.91981 7.36714 8.20829 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.003507 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.823199 B = 7982.900138 C = 8275.260899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.036 3.964 3 Si 0.985 3.015 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.478 4.478 8 H 0.088 0.912 9 C 0.100 3.900 10 C -0.241 4.241 11 C -0.041 4.041 12 C -0.279 4.279 13 C 0.568 3.432 14 O -0.603 6.603 15 N -0.597 5.597 16 C 0.091 3.909 17 C -0.122 4.122 18 C -0.110 4.110 19 C -0.079 4.079 20 H 0.087 0.913 21 C 0.078 3.922 22 O -0.589 6.589 23 C -0.115 4.115 24 C 0.116 3.884 25 C -0.058 4.058 26 C -0.196 4.196 27 H 0.293 0.707 28 H 0.115 0.885 29 H 0.130 0.870 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.065 0.935 37 H 0.033 0.967 38 H 0.395 0.605 39 H 0.028 0.972 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 -11.206 8.003 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.506 4.506 8 H 0.106 0.894 9 C 0.097 3.903 10 C -0.260 4.260 11 C -0.060 4.060 12 C -0.283 4.283 13 C 0.361 3.639 14 O -0.486 6.486 15 N -0.327 5.327 16 C -0.030 4.030 17 C -0.160 4.160 18 C -0.148 4.148 19 C -0.097 4.097 20 H 0.105 0.895 21 C 0.000 4.000 22 O -0.397 6.397 23 C -0.154 4.154 24 C -0.007 4.007 25 C -0.078 4.078 26 C -0.215 4.215 27 H 0.104 0.896 28 H 0.133 0.867 29 H 0.148 0.852 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.244 0.756 39 H 0.046 0.954 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.120 0.880 43 H 0.102 0.898 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.857 -11.397 7.361 14.778 hybrid contribution -0.590 1.302 -0.386 1.481 sum -6.447 -10.095 6.976 13.861 Atomic orbital electron populations 1.69798 1.09357 1.31180 1.32843 1.26925 0.95459 1.04923 0.90900 0.85103 0.79626 0.75745 0.78992 1.17696 1.19195 1.18719 1.20090 0.98458 0.91999 1.40036 0.89372 1.18076 0.90803 0.93611 0.87798 1.20924 1.04833 0.92468 1.07824 1.20677 0.93251 0.97923 0.94132 1.19089 1.04353 0.91886 1.12977 1.18723 0.77288 0.83553 0.84361 1.90622 1.57310 1.79550 1.21137 1.47630 1.54302 1.20998 1.09813 1.22571 0.97423 1.03367 0.79674 1.21736 0.93333 1.02869 0.98017 1.21046 0.96872 0.97122 0.99745 1.20083 0.93884 1.00060 0.95697 0.89506 1.22370 0.92607 0.88007 0.96990 1.86417 1.25183 1.45828 1.82302 1.21069 0.96014 1.01125 0.97179 1.21462 0.90583 0.87562 1.01077 1.20407 0.97832 0.92498 0.97024 1.20886 1.00932 0.96415 1.03271 0.89608 0.86695 0.85239 0.90047 0.89792 0.89513 0.88881 0.89927 0.94550 0.91712 0.94821 0.75567 0.95360 0.90108 0.92099 0.87982 0.89800 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.29 10.94 21.87 0.24 -40.05 16 2 C 0.04 1.70 5.15 85.35 0.44 2.14 16 3 Si 0.99 35.76 29.59 68.60 2.03 37.79 16 4 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 5 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 6 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.48 -24.17 9.05 23.46 0.21 -23.96 16 8 H 0.09 4.21 7.90 -2.91 -0.02 4.19 16 9 C 0.10 5.18 5.57 -21.28 -0.12 5.07 16 10 C -0.24 -10.98 9.73 22.47 0.22 -10.76 16 11 C -0.04 -1.72 7.23 22.25 0.16 -1.56 16 12 C -0.28 -12.83 5.04 -19.94 -0.10 -12.93 16 13 C 0.57 24.58 7.20 86.73 0.62 25.20 16 14 O -0.60 -30.19 16.39 -3.99 -0.07 -30.26 16 15 N -0.60 -19.58 2.24 -821.80 -1.84 -21.42 16 16 C 0.09 2.41 4.64 86.48 0.40 2.81 16 17 C -0.12 -2.42 5.71 30.22 0.17 -2.24 16 18 C -0.11 -2.50 4.93 29.76 0.15 -2.35 16 19 C -0.08 -1.72 1.92 -12.79 -0.02 -1.74 16 20 H 0.09 1.66 7.36 -2.38 -0.02 1.65 16 21 C 0.08 1.51 6.26 71.98 0.45 1.96 16 22 O -0.59 -11.25 12.75 -148.98 -1.90 -13.15 16 23 C -0.12 -3.15 4.86 29.38 0.14 -3.01 16 24 C 0.12 3.29 5.42 87.38 0.47 3.76 16 25 C -0.06 -2.96 9.62 22.25 0.21 -2.75 16 26 C -0.20 -10.41 8.63 22.47 0.19 -10.22 16 27 H 0.29 13.10 8.29 -92.70 -0.77 12.33 16 28 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 29 H 0.13 4.41 6.35 -2.91 -0.02 4.39 16 30 H 0.08 1.79 7.81 -2.39 -0.02 1.77 16 31 H 0.08 2.70 4.63 -2.38 -0.01 2.68 16 32 H 0.09 1.35 7.32 -2.39 -0.02 1.33 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.55 7.73 -2.39 -0.02 1.53 16 35 H 0.04 1.11 7.48 -2.38 -0.02 1.09 16 36 H 0.06 0.98 7.95 -2.39 -0.02 0.96 16 37 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.39 3.94 9.12 -74.05 -0.68 3.27 16 39 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.08 2.14 7.35 -2.39 -0.02 2.13 16 41 H 0.06 1.98 7.24 -2.38 -0.02 1.97 16 42 H 0.10 2.19 8.07 -2.39 -0.02 2.17 16 43 H 0.08 4.26 8.06 -2.91 -0.02 4.23 16 44 H 0.10 5.70 6.17 -2.91 -0.02 5.68 16 Total: -1.00 -66.19 345.51 2.41 -63.78 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: 0.34 Total: 33.89 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 3.61 Total: -30.58 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -1.60 Total: -61.47 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -1.97 Total: -43.41 kcal Atomic # 14 Polarization: 35.76 SS G_CDS: 2.03 Total: 37.79 kcal Total: -66.19 2.41 -63.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294431514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.451 kcal (2) G-P(sol) polarization free energy of solvation -66.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds