Wall clock time and date at job start Tue Mar 31 2020 08:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86797 * 120.00150 * 2 1 4 4 H 1.48495 * 109.47362 * 275.20479 * 3 2 1 5 5 H 1.48499 * 109.47161 * 35.20492 * 3 2 1 6 6 H 1.48503 * 109.47036 * 155.20621 * 3 2 1 7 7 C 1.39938 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00113 * 343.48294 * 7 2 1 9 9 C 1.41433 * 119.99938 * 163.76217 * 7 2 1 10 10 C 1.40792 * 120.17811 * 330.25325 * 9 7 2 11 11 C 1.37711 * 120.03881 * 180.02562 * 10 9 7 12 12 C 1.38366 * 120.41547 * 359.97438 * 11 10 9 13 13 C 1.39880 * 120.35735 * 359.97438 * 12 11 10 14 14 C 1.47890 * 120.02371 * 180.02562 * 13 12 11 15 15 O 1.21548 * 120.00514 * 45.13129 * 14 13 12 16 16 N 1.34780 * 119.99649 * 225.13444 * 14 13 12 17 17 C 1.47608 * 118.64124 * 355.74276 * 16 14 13 18 18 C 1.53945 * 112.13995 * 137.87443 * 17 16 14 19 19 C 1.50884 * 110.09632 * 319.42990 * 18 17 16 20 20 C 1.52569 * 109.34977 * 91.88710 * 19 18 17 21 21 H 1.09000 * 108.51288 * 36.24253 * 20 19 18 22 22 C 1.53002 * 108.50906 * 153.73068 * 20 19 18 23 23 O 1.42905 * 109.47044 * 185.00383 * 22 20 19 24 24 C 1.47096 * 114.33144 * 274.98359 * 20 19 18 25 25 C 1.44581 * 118.64187 * 175.48149 * 16 14 13 26 26 C 1.39032 * 119.94724 * 359.75994 * 13 12 11 27 27 H 0.97000 * 119.99558 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.97919 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.78906 * 179.97438 * 11 10 9 30 30 H 1.08008 * 119.82277 * 179.97438 * 12 11 10 31 31 H 1.09003 * 108.94919 * 258.55279 * 17 16 14 32 32 H 1.08995 * 108.94803 * 17.27501 * 17 16 14 33 33 H 1.08994 * 109.37396 * 79.62813 * 18 17 16 34 34 H 1.09001 * 109.36694 * 199.37163 * 18 17 16 35 35 H 1.08990 * 109.49490 * 211.85386 * 19 18 17 36 36 H 1.09003 * 109.48862 * 331.93237 * 19 18 17 37 37 H 1.09007 * 109.47314 * 304.99817 * 22 20 19 38 38 H 1.08995 * 109.47643 * 65.00336 * 22 20 19 39 39 H 0.96700 * 114.00045 * 179.97438 * 23 22 20 40 40 H 1.09003 * 109.32992 * 183.06713 * 24 20 19 41 41 H 1.09000 * 109.32714 * 302.54994 * 24 20 19 42 42 H 1.08993 * 109.44925 * 30.75956 * 25 16 14 43 43 H 1.09000 * 109.44433 * 150.67974 * 25 16 14 44 44 H 1.08004 * 120.19855 * 180.26011 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3799 2.1099 -1.3942 5 1 1.4991 2.6184 0.8071 6 1 3.5906 1.4108 0.5871 7 6 2.0079 -1.2119 -0.0005 8 1 1.5013 -2.1280 0.2650 9 6 3.3799 -1.2363 -0.3431 10 6 3.9020 -0.2863 -1.2416 11 6 5.2383 -0.3130 -1.5735 12 6 6.0765 -1.2696 -1.0285 13 6 5.5760 -2.2207 -0.1333 14 6 6.4786 -3.2395 0.4451 15 8 7.5690 -2.9135 0.8718 16 7 6.0920 -4.5295 0.4992 17 6 4.7262 -4.8778 0.0608 18 6 4.6983 -6.1651 -0.7831 19 6 5.8746 -6.1913 -1.7277 20 6 7.0416 -6.9141 -1.0619 21 1 6.6445 -7.7318 -0.4605 22 6 7.9317 -7.5092 -2.1549 23 8 8.9671 -8.2894 -1.5537 24 6 7.8708 -6.0592 -0.1985 25 6 7.0341 -5.5158 0.9787 26 6 4.2305 -2.2042 0.2165 27 1 -0.4849 0.8401 0.0004 28 1 3.2541 0.4631 -1.6714 29 1 5.6344 0.4173 -2.2634 30 1 7.1229 -1.2819 -1.2958 31 1 4.0971 -5.0173 0.9399 32 1 4.3255 -4.0572 -0.5343 33 1 4.7454 -7.0311 -0.1231 34 1 3.7737 -6.1996 -1.3593 35 1 5.5956 -6.7158 -2.6415 36 1 6.1696 -5.1702 -1.9696 37 1 7.3312 -8.1434 -2.8072 38 1 8.3764 -6.7042 -2.7397 39 1 9.5706 -8.6984 -2.1890 40 1 8.7067 -6.6412 0.1897 41 1 8.2565 -5.2232 -0.7820 42 1 7.6998 -5.0566 1.7095 43 1 6.4923 -6.3373 1.4476 44 1 3.8406 -2.9341 0.9105 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294665413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:31 Heat of formation + Delta-G solvation = -70.891188 kcal Electronic energy + Delta-G solvation = -25390.088468 eV Core-core repulsion = 21885.632294 eV Total energy + Delta-G solvation = -3504.456174 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.33183 -38.40772 -37.32857 -36.35685 -33.91030 -33.64977 -32.53501 -30.65049 -30.26180 -27.87849 -25.91767 -25.20225 -24.13046 -22.64647 -21.15121 -20.82638 -20.19420 -18.94625 -17.53065 -17.39918 -16.32130 -16.16005 -15.84496 -15.43447 -14.97019 -14.71828 -14.53354 -14.10062 -14.00491 -13.49798 -13.37880 -13.00880 -12.84676 -12.77581 -12.39004 -12.29384 -12.10730 -11.76592 -11.60383 -11.20302 -11.14386 -10.98865 -10.77400 -10.71073 -10.58337 -10.50431 -10.39042 -10.12502 -10.00101 -9.74648 -9.46550 -9.04598 -8.32964 -7.83076 -7.75197 -7.02732 -4.59789 2.04617 2.48336 3.04453 3.16557 3.24929 3.30099 3.50916 3.91405 4.01540 4.41270 4.62145 4.69916 4.92796 5.02157 5.04715 5.20003 5.22006 5.26809 5.44634 5.47613 5.60217 5.65202 5.77516 5.82252 5.90880 5.92419 6.03614 6.10441 6.13353 6.21210 6.26214 6.28822 6.32880 6.41032 6.54364 6.70684 6.91878 7.00134 7.20087 7.38151 7.40974 7.46486 7.68864 7.76031 7.88024 8.22835 8.47423 8.66742 8.68681 9.99454 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024522 B = 0.003863 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.546299 B = 7246.625393 C = 7648.837207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.084 3.916 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.242 1.242 7 C -0.446 4.446 8 H 0.092 0.908 9 C 0.086 3.914 10 C -0.219 4.219 11 C -0.083 4.083 12 C -0.191 4.191 13 C -0.097 4.097 14 C 0.562 3.438 15 O -0.549 6.549 16 N -0.603 5.603 17 C 0.091 3.909 18 C -0.129 4.129 19 C -0.111 4.111 20 C -0.081 4.081 21 H 0.071 0.929 22 C 0.076 3.924 23 O -0.574 6.574 24 C -0.126 4.126 25 C 0.118 3.882 26 C -0.180 4.180 27 H 0.286 0.714 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.376 0.624 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.828 -12.211 -4.091 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.135 4.135 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.165 1.165 7 C -0.475 4.475 8 H 0.110 0.890 9 C 0.083 3.917 10 C -0.238 4.238 11 C -0.102 4.102 12 C -0.211 4.211 13 C -0.100 4.100 14 C 0.353 3.647 15 O -0.428 6.428 16 N -0.335 5.335 17 C -0.030 4.030 18 C -0.168 4.168 19 C -0.149 4.149 20 C -0.100 4.100 21 H 0.090 0.910 22 C -0.002 4.002 23 O -0.379 6.379 24 C -0.164 4.164 25 C -0.006 4.006 26 C -0.200 4.200 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.222 0.778 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.796 -11.793 -3.274 15.072 hybrid contribution 0.362 0.551 -0.634 0.915 sum 9.157 -11.242 -3.908 15.017 Atomic orbital electron populations 1.69671 1.08028 1.30345 1.35072 1.26128 0.94752 1.01671 0.90908 0.86360 0.81448 0.79854 0.78880 1.19617 1.21766 1.16544 1.19454 0.92266 0.96041 1.39722 0.88962 1.17635 0.93225 0.90867 0.89933 1.21207 0.95357 1.03818 1.03415 1.20552 0.93710 0.97206 0.98711 1.20324 0.98278 0.98636 1.03825 1.19420 0.93656 0.96650 1.00278 1.18957 0.86118 0.82290 0.77345 1.90686 1.23217 1.80896 1.47969 1.47612 1.14281 1.06800 1.64849 1.22556 0.82209 0.99108 0.99175 1.21747 0.98945 0.97884 0.98186 1.21070 0.94299 1.01454 0.98065 1.20141 0.95144 0.98342 0.96339 0.91022 1.22431 0.89049 0.93520 0.95153 1.86481 1.44030 1.69276 1.38078 1.21092 0.98455 0.99386 0.97476 1.21225 0.91866 0.91333 0.96157 1.21237 0.91090 1.03791 1.03865 0.90349 0.87939 0.88164 0.88145 0.91797 0.86997 0.91858 0.90292 0.91824 0.91000 0.93846 0.93747 0.77769 0.90254 0.91884 0.90003 0.91118 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.68 13.93 55.55 0.77 -19.91 16 2 C 0.08 2.12 5.43 -17.34 -0.09 2.03 16 3 Si 0.91 20.17 24.45 -169.99 -4.16 16.02 16 4 H -0.27 -5.78 6.72 56.52 0.38 -5.40 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.24 -5.59 6.74 56.52 0.38 -5.21 16 7 C -0.45 -11.33 9.58 -37.73 -0.36 -11.69 16 8 H 0.09 2.41 8.06 -52.49 -0.42 1.99 16 9 C 0.09 2.05 5.12 -106.87 -0.55 1.50 16 10 C -0.22 -5.01 7.07 -38.81 -0.27 -5.28 16 11 C -0.08 -1.75 10.01 -39.73 -0.40 -2.15 16 12 C -0.19 -4.03 9.69 -38.92 -0.38 -4.41 16 13 C -0.10 -2.05 5.04 -105.04 -0.53 -2.58 16 14 C 0.56 11.17 7.22 -12.31 -0.09 11.08 16 15 O -0.55 -12.33 16.39 5.32 0.09 -12.24 16 16 N -0.60 -9.62 2.25 -173.99 -0.39 -10.01 16 17 C 0.09 1.30 4.64 -2.94 -0.01 1.29 16 18 C -0.13 -1.46 5.71 -27.30 -0.16 -1.61 16 19 C -0.11 -1.25 4.93 -28.01 -0.14 -1.39 16 20 C -0.08 -0.90 1.91 -93.67 -0.18 -1.08 16 21 H 0.07 0.78 7.36 -51.93 -0.38 0.40 16 22 C 0.08 0.73 6.26 37.16 0.23 0.97 16 23 O -0.57 -5.61 12.76 -35.23 -0.45 -6.06 16 24 C -0.13 -1.61 4.86 -28.88 -0.14 -1.75 16 25 C 0.12 1.63 5.37 -4.38 -0.02 1.61 16 26 C -0.18 -3.90 7.04 -38.44 -0.27 -4.17 16 27 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 28 H 0.10 2.34 4.56 -52.49 -0.24 2.10 16 29 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 31 H 0.06 0.87 7.81 -51.93 -0.41 0.46 16 32 H 0.11 1.84 4.62 -51.93 -0.24 1.60 16 33 H 0.06 0.64 7.32 -51.93 -0.38 0.26 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.62 7.72 -51.93 -0.40 0.21 16 36 H 0.07 0.97 7.48 -51.93 -0.39 0.59 16 37 H 0.04 0.36 7.95 -51.93 -0.41 -0.05 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.38 1.97 9.12 45.56 0.42 2.38 16 40 H 0.08 1.00 7.36 -51.93 -0.38 0.62 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.25 7.24 -51.93 -0.38 0.88 16 43 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 44 H 0.11 2.24 6.32 -52.48 -0.33 1.90 16 LS Contribution 340.05 15.07 5.12 5.12 Total: -1.00 -29.16 340.05 -8.03 -37.19 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.66 Total: 7.52 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -3.36 Total: -17.63 kcal Atomic # 7 Polarization: -30.30 SS G_CDS: 0.38 Total: -29.92 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.36 Total: -18.30 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.16 Total: 16.02 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.16 -8.03 -37.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294665413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.701 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds