Wall clock time and date at job start Tue Mar 31 2020 08:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99940 * 2 1 4 4 H 1.48495 * 109.47007 * 270.00031 * 3 2 1 5 5 H 1.48503 * 109.47286 * 30.00306 * 3 2 1 6 6 H 1.48497 * 109.46788 * 149.99860 * 3 2 1 7 7 C 1.37866 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00372 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00264 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.47513 * 180.02562 * 9 7 2 11 11 C 1.46504 * 120.00230 * 89.99967 * 10 9 7 12 12 C 1.50697 * 109.47084 * 270.00390 * 11 10 9 13 13 C 1.34515 * 125.79567 * 89.99574 * 12 11 10 14 14 C 1.41381 * 106.84269 * 179.97438 * 13 12 11 15 15 C 1.34509 * 106.84114 * 0.02562 * 14 13 12 16 16 O 1.34301 * 108.42378 * 0.26244 * 15 14 13 17 17 C 1.34773 * 119.99819 * 270.00172 * 10 9 7 18 18 O 1.21622 * 119.99831 * 179.97438 * 17 10 9 19 19 C 1.47095 * 120.00426 * 359.97438 * 17 10 9 20 20 C 1.32996 * 120.00683 * 187.02778 * 19 17 10 21 21 C 1.51268 * 120.84519 * 12.14789 * 20 19 17 22 22 C 1.53664 * 108.31268 * 128.61355 * 21 20 19 23 23 C 1.52960 * 109.31989 * 54.86083 * 22 21 20 24 24 C 1.52964 * 109.81956 * 296.27393 * 23 22 21 25 25 C 1.51265 * 120.85317 * 192.42522 * 20 19 17 26 26 H 0.97008 * 119.99648 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46630 * 59.99882 * 9 7 2 28 28 H 1.09002 * 109.46839 * 300.00654 * 9 7 2 29 29 H 1.08993 * 109.47046 * 150.00015 * 11 10 9 30 30 H 1.09001 * 109.46891 * 29.99748 * 11 10 9 31 31 H 1.08001 * 126.57531 * 359.94770 * 13 12 11 32 32 H 1.08002 * 126.57630 * 180.02562 * 14 13 12 33 33 H 1.07997 * 125.78693 * 179.97438 * 15 14 13 34 34 H 1.08005 * 120.00156 * 7.03126 * 19 17 10 35 35 H 1.09003 * 109.62637 * 248.39090 * 21 20 19 36 36 H 1.09003 * 109.62608 * 8.95571 * 21 20 19 37 37 H 1.08997 * 109.63081 * 294.84380 * 22 21 20 38 38 H 1.09001 * 109.42415 * 174.75545 * 22 21 20 39 39 H 1.09001 * 109.41593 * 176.16197 * 23 22 21 40 40 H 1.09006 * 109.41701 * 56.37786 * 23 22 21 41 41 H 1.08994 * 109.47866 * 303.61824 * 24 23 22 42 42 H 1.08996 * 109.48296 * 183.58083 * 24 23 22 43 43 H 1.08998 * 109.62804 * 351.04147 * 25 20 19 44 44 H 1.09004 * 109.62379 * 111.61405 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 4.2445 -3.2657 -1.2678 12 6 2.9888 -3.9759 -1.7035 13 6 2.0185 -3.4557 -2.4764 14 6 1.0371 -4.4611 -2.6339 15 6 1.4660 -5.5353 -1.9474 16 8 2.6457 -5.2337 -1.3809 17 6 4.2239 -3.2109 1.1681 18 8 4.6289 -4.3577 1.1680 19 6 3.9788 -2.5176 2.4421 20 6 4.3303 -3.0908 3.5896 21 6 5.2196 -4.3144 3.6049 22 6 6.3849 -4.0523 4.5717 23 6 5.8278 -3.6615 5.9416 24 6 5.0566 -2.3451 5.8315 25 6 3.8461 -2.5395 4.9124 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8752 -0.6804 -0.8888 29 1 5.0463 -3.9924 -1.1373 30 1 4.5328 -2.5388 -2.0272 31 1 1.9938 -2.4607 -2.8957 32 1 0.1191 -4.3817 -3.1974 33 1 0.9472 -6.4787 -1.8621 34 1 3.5133 -1.5430 2.4458 35 1 4.6474 -5.1786 3.9423 36 1 5.6077 -4.4974 2.6029 37 1 7.0048 -3.2426 4.1869 38 1 6.9862 -4.9563 4.6682 39 1 6.6504 -3.5416 6.6465 40 1 5.1584 -4.4448 6.2975 41 1 5.7080 -1.5758 5.4170 42 1 4.7164 -2.0392 6.8208 43 1 3.3515 -1.5817 4.7509 44 1 3.1490 -3.2423 5.3687 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299556362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:06 Heat of formation + Delta-G solvation = -6.745245 kcal Electronic energy + Delta-G solvation = -25400.207232 eV Core-core repulsion = 21898.532635 eV Total energy + Delta-G solvation = -3501.674597 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.87224 -39.52050 -37.74804 -35.30942 -32.73699 -32.32171 -32.25499 -30.76990 -30.32305 -27.89825 -26.93287 -24.89676 -22.73646 -22.61066 -21.23267 -21.05805 -20.07595 -19.14845 -17.58522 -17.18805 -16.73241 -16.37723 -15.65193 -15.20538 -14.75843 -14.59288 -14.27758 -14.11025 -13.71255 -13.65662 -13.15320 -12.95717 -12.58019 -12.45489 -12.21226 -12.18362 -12.12431 -12.03002 -11.84014 -11.56440 -11.21983 -11.05298 -10.88140 -10.81042 -10.68855 -10.39759 -10.28605 -10.05715 -9.62002 -9.18411 -8.84081 -8.67952 -8.51077 -7.96133 -7.69044 -6.16691 -4.17286 1.87895 2.31704 3.17171 3.23223 3.25024 3.27942 3.59212 3.95887 4.02021 4.28129 4.87895 4.89680 5.01348 5.12106 5.20627 5.29854 5.35784 5.42167 5.56215 5.59447 5.67090 5.74368 5.75967 5.82074 5.89321 5.95610 6.03342 6.09976 6.12429 6.23462 6.26408 6.34973 6.44640 6.46085 6.58574 6.62856 6.68768 6.70971 7.00540 7.06686 7.16722 7.30052 7.46033 7.80090 8.12470 8.43270 8.88497 8.96963 9.41878 10.95876 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.005885 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.637002 B = 4756.896626 C = 6594.122138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.866 3.134 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.531 4.531 8 H 0.081 0.919 9 C 0.206 3.794 10 N -0.586 5.586 11 C 0.202 3.798 12 C -0.024 4.024 13 C -0.171 4.171 14 C -0.212 4.212 15 C -0.057 4.057 16 O -0.170 6.170 17 C 0.554 3.446 18 O -0.557 6.557 19 C -0.200 4.200 20 C -0.049 4.049 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.090 4.090 26 H 0.264 0.736 27 H 0.038 0.962 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.193 0.807 34 H 0.136 0.864 35 H 0.068 0.932 36 H 0.121 0.879 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.227 -5.229 4.143 11.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.693 3.307 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.569 4.569 8 H 0.099 0.901 9 C 0.086 3.914 10 N -0.315 5.315 11 C 0.078 3.922 12 C -0.075 4.075 13 C -0.191 4.191 14 C -0.231 4.231 15 C -0.125 4.125 16 O -0.066 6.066 17 C 0.347 3.653 18 O -0.440 6.440 19 C -0.221 4.221 20 C -0.051 4.051 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.159 4.159 24 C -0.153 4.153 25 C -0.127 4.127 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.165 0.835 32 H 0.158 0.842 33 H 0.210 0.790 34 H 0.154 0.846 35 H 0.087 0.913 36 H 0.139 0.861 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.457 -5.836 4.308 11.918 hybrid contribution -0.441 1.314 -0.150 1.394 sum 9.016 -4.522 4.158 10.910 Atomic orbital electron populations 1.69904 1.06156 1.26891 1.49808 1.24857 0.94667 0.98575 0.94588 0.87014 0.80485 0.84394 0.78834 1.20015 1.20995 1.18889 1.21389 0.88821 0.95109 1.51626 0.90050 1.19928 0.96301 0.77588 0.97628 1.47930 1.64077 1.15458 1.04019 1.19622 0.90936 0.94953 0.86640 1.22806 1.00463 0.83337 1.00904 1.21532 0.94029 1.00297 1.03233 1.21758 1.01668 0.94078 1.05601 1.23834 0.87412 1.00972 1.00285 1.84039 1.33787 1.29755 1.59025 1.18509 0.76632 0.85646 0.84546 1.90532 1.48116 1.18141 1.87170 1.22585 1.06098 1.01912 0.91480 1.22527 0.93315 0.95454 0.93846 1.21614 0.95183 0.94970 1.03496 1.21668 0.97810 1.00943 0.94895 1.21551 0.99440 0.97529 0.97367 1.21562 0.96940 0.97745 0.99080 1.20894 0.97397 1.01483 0.92916 0.92543 0.94401 0.95302 0.89282 0.87983 0.83532 0.84179 0.79047 0.84611 0.91332 0.86149 0.92247 0.92102 0.92454 0.92069 0.91869 0.91966 0.90700 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.96 55.43 0.77 -25.00 16 2 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 19.54 27.47 -169.99 -4.67 14.87 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 7 C -0.53 -13.81 9.69 -34.44 -0.33 -14.14 16 8 H 0.08 2.45 7.90 -52.48 -0.41 2.04 16 9 C 0.21 4.49 3.94 -5.19 -0.02 4.47 16 10 N -0.59 -12.03 2.44 -177.84 -0.43 -12.46 16 11 C 0.20 3.69 5.98 -5.19 -0.03 3.66 16 12 C -0.02 -0.48 6.90 -35.63 -0.25 -0.72 16 13 C -0.17 -3.39 10.40 -39.70 -0.41 -3.81 16 14 C -0.21 -3.85 10.91 -39.70 -0.43 -4.28 16 15 C -0.06 -0.99 12.09 29.41 0.36 -0.63 16 16 O -0.17 -3.46 10.65 5.69 0.06 -3.40 16 17 C 0.55 11.58 7.47 -12.67 -0.09 11.48 16 18 O -0.56 -12.14 12.80 5.26 0.07 -12.07 16 19 C -0.20 -3.83 8.76 -37.81 -0.33 -4.16 16 20 C -0.05 -0.81 5.38 -100.61 -0.54 -1.35 16 21 C -0.12 -1.80 5.32 -27.26 -0.15 -1.95 16 22 C -0.12 -1.43 5.95 -26.41 -0.16 -1.58 16 23 C -0.12 -1.32 5.81 -26.77 -0.16 -1.47 16 24 C -0.12 -1.31 5.94 -26.63 -0.16 -1.47 16 25 C -0.09 -1.22 6.04 -27.49 -0.17 -1.38 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.04 0.81 5.25 -51.93 -0.27 0.54 16 28 H 0.03 0.60 7.32 -51.93 -0.38 0.22 16 29 H 0.09 1.55 7.42 -51.93 -0.39 1.16 16 30 H 0.10 1.57 7.89 -51.93 -0.41 1.16 16 31 H 0.15 2.90 8.06 -52.49 -0.42 2.48 16 32 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 33 H 0.19 2.49 8.06 -52.49 -0.42 2.06 16 34 H 0.14 2.68 6.26 -52.48 -0.33 2.35 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.12 2.16 4.79 -52.87 -0.25 1.91 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -30.82 356.51 -8.47 -39.29 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.67 Total: 8.80 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -2.97 Total: -15.39 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.34 Total: -37.46 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.13 Total: -15.48 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.67 Total: 14.87 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.82 -8.47 -39.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299556362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.547 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds